diff --git a/doc/doxygen/modules.txt b/doc/doxygen/modules.txt
index adc49c12ea13844d6c53a9ec4ff2b146c7e063b3..86fa0268a3abbfda6b447ac986e1449032bb7094 100644
--- a/doc/doxygen/modules.txt
+++ b/doc/doxygen/modules.txt
@@ -131,11 +131,11 @@
*/
/*!
* \ingroup PorousmediumflowModels
- * \defgroup PorousmediumNonEquilibriumModel NonEquilibrium
+ * \defgroup PorousmediumNonEquilibriumModel NonEquilibrium
* \brief Model that adds nonequilibrium equations to another porous medium flow model (only used in MPNCModel currently)
* \copydetails ./porousmediumflow/nonequilibrium/model.hh
*/
- /*!
+ /*!
* \ingroup PorousmediumNonEquilibriumModel
* \defgroup PorousmediumThermalNonEquilibriumModel ThermalNonEquilibrium
* \brief Model that adapts the energy localresidual to thermal nonequilibrium
@@ -172,7 +172,7 @@
* \defgroup FreeflowModels Free Flow Models
* \brief Single-phase models basing on the Navier-Stokes equation
*/
- /*!
+ /*!
* \ingroup FreeflowModels
* \defgroup NavierStokesModel Navier-Stokes
* \brief Single-phase Navier-Stokes flow
@@ -237,111 +237,111 @@
* \defgroup BenchmarksAndTests Benchmarks and Tests
* \brief Benchmarks and tests used for (automated) testing and demonstration purposes
*/
- /*!
- * \ingroup BenchmarksAndTests
- * \defgroup PorousmediumflowTests Porous-Medium Flow Tests
- * \brief Single and multi-phase tests for flow and transport in porous materials
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup OnePTests 1p (one phase) benchmarks and tests
- * \brief Various tests using a OnePModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup OnePNCTests 1pnc (one phase, multi-component) benchmarks and tests
- * \brief Various tests using a OnePNCModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup OnePNCMinTests 1pncmin (one phase, multi-component mineralization) benchmarks and tests
- * \brief Various tests using the OnePNCMinModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup TwoPTests 2p (two phase) benchmarks and tests
- * \brief Various tests using a TwoPModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup TwoPOneCTests 2p1c (two phase, one component) benchmarks and tests
- * \brief Various tests using the TwoPOneCModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup TwoPTwoCTests 2p2c (two phase, two component) benchmarks and tests
- * \brief Various tests using a TwoPTwoCModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup TwoPNCTests 2pnc (two phase, multi-component) benchmarks and tests
- * \brief A fuel cell test problem using the TwoPNCModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup TwoPNCMinTests 2pncmin (two phase, multi-component mineralization) benchmarks and tests
- * \brief A salt dissolution test problem using the TwoPNCMinModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup ThreePTests 3p (three phase) benchmarks and tests
- * \brief Various tests using a ThreePModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup ThreePThreeCTests 3p3c (three phase, three component) benchmarks and tests
- * \brief Various tests using a ThreePThreeCModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup ThreePWaterOilTests 3pwateroil (three phase, water oil) benchmarks and tests
- * \brief A SAGD test problem using the ThreePWaterOilModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup CO2Tests CO2 (two phase, two component) benchmarks and tests
- * \brief A CO2 injection test problem using the TwoPTwoCModel and heterogeneous spatial parameters. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup MPNCTests MPNC (multi-phase, multi-component) benchmarks and tests
- * \brief Various tests using the MPNCModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup RichardsTests Richards benchmarks and tests
- * \brief Various tests using a RichardsModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup RichardsNCTests Richards multi-component benchmarks and tests
- * \brief A multi-component transport problem in the unsaturated zone using the RichardsNCModel. The files are listed below.
- */
- /*!
- * \ingroup PorousmediumflowTests
- * \defgroup TracerTests Tracer benchmarks and tests
- * \brief Various tests using a TracerModel. The files are listed below.
- */
- /*!
- * \ingroup BenchmarksAndTests
- * \defgroup FreeflowTests Free Flow Tests
- * \brief Varios tests for single-phase Navier-Stokes / Stokes tests
- */
- /*!
- * \ingroup FreeflowTests
- * \defgroup NavierStokesTests Single-phase Navier-Stokes tests
- * \brief Various tests using a Single-phase Navier-Stokes flow. The files are listed below.
- */
- /*!
- * \ingroup FreeflowTests
- * \defgroup NavierStokesNCTests Single-phase Navier-Stokes nc tests
- * \brief Various tests using a Single-phase Navier-Stokes flow. The files are listed below.
- */
- /*!
- * \ingroup BenchmarksAndTests
- * \defgroup MaterialTests Material system tests
- * \brief Benchmarks and Test(s) for the material system.
- */
+ /*!
+ * \ingroup BenchmarksAndTests
+ * \defgroup PorousmediumflowTests Porous-Medium Flow Tests
+ * \brief Single and multi-phase tests for flow and transport in porous materials
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup OnePTests 1p (one phase) benchmarks and tests
+ * \brief Various tests using a OnePModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup OnePNCTests 1pnc (one phase, multi-component) benchmarks and tests
+ * \brief Various tests using a OnePNCModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup OnePNCMinTests 1pncmin (one phase, multi-component mineralization) benchmarks and tests
+ * \brief Various tests using the OnePNCMinModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup TwoPTests 2p (two phase) benchmarks and tests
+ * \brief Various tests using a TwoPModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup TwoPOneCTests 2p1c (two phase, one component) benchmarks and tests
+ * \brief Various tests using the TwoPOneCModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup TwoPTwoCTests 2p2c (two phase, two component) benchmarks and tests
+ * \brief Various tests using a TwoPTwoCModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup TwoPNCTests 2pnc (two phase, multi-component) benchmarks and tests
+ * \brief A fuel cell test problem using the TwoPNCModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup TwoPNCMinTests 2pncmin (two phase, multi-component mineralization) benchmarks and tests
+ * \brief A salt dissolution test problem using the TwoPNCMinModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup ThreePTests 3p (three phase) benchmarks and tests
+ * \brief Various tests using a ThreePModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup ThreePThreeCTests 3p3c (three phase, three component) benchmarks and tests
+ * \brief Various tests using a ThreePThreeCModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup ThreePWaterOilTests 3pwateroil (three phase, water oil) benchmarks and tests
+ * \brief A SAGD test problem using the ThreePWaterOilModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup CO2Tests CO2 (two phase, two component) benchmarks and tests
+ * \brief A CO2 injection test problem using the TwoPTwoCModel and heterogeneous spatial parameters. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup MPNCTests MPNC (multi-phase, multi-component) benchmarks and tests
+ * \brief Various tests using the MPNCModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup RichardsTests Richards benchmarks and tests
+ * \brief Various tests using a RichardsModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup RichardsNCTests Richards multi-component benchmarks and tests
+ * \brief A multi-component transport problem in the unsaturated zone using the RichardsNCModel. The files are listed below.
+ */
+ /*!
+ * \ingroup PorousmediumflowTests
+ * \defgroup TracerTests Tracer benchmarks and tests
+ * \brief Various tests using a TracerModel. The files are listed below.
+ */
+ /*!
+ * \ingroup BenchmarksAndTests
+ * \defgroup FreeflowTests Free Flow Tests
+ * \brief Varios tests for single-phase Navier-Stokes / Stokes tests
+ */
+ /*!
+ * \ingroup FreeflowTests
+ * \defgroup NavierStokesTests Single-phase Navier-Stokes tests
+ * \brief Various tests using a Single-phase Navier-Stokes flow. The files are listed below.
+ */
+ /*!
+ * \ingroup FreeflowTests
+ * \defgroup NavierStokesNCTests Single-phase Navier-Stokes nc tests
+ * \brief Various tests using a Single-phase Navier-Stokes flow. The files are listed below.
+ */
+ /*!
+ * \ingroup BenchmarksAndTests
+ * \defgroup MaterialTests Material system tests
+ * \brief Benchmarks and Test(s) for the material system.
+ */
/* ***************** Discretization ******************/
/*!
@@ -357,7 +357,7 @@
* \ingroup Discretization
* \defgroup CCDiscretization Cell-centered FV scheme
* \brief Finite volume schemes with degrees of freedom located at grid cell centers.
- */
+ */
/*!
* \ingroup CCDiscretization
* \defgroup CCTpfaDiscretization Two-point flux approximation (Tpfa)
@@ -391,7 +391,7 @@
* - __Fluid system:__ <br> @copydoc Fluidsystems
* - __Spatial Parameters:__ <br> @copydoc SpatialParameters
*/
- /*!
+ /*!
* \ingroup Material
* \defgroup Binarycoefficients Binary Coefficients
* \brief Binary coefficients
@@ -422,7 +422,7 @@
* chemical species or a _fixed_ mixture of species.
* Fluid systems use components to compute thermodynamic quantities of phases.
*/
- /*!
+ /*!
* \ingroup Components
* \defgroup IAPWS IAPWS
* \brief Tabulated values according to the International Association for the Properties of Water and Steam (IAPWS)
@@ -517,11 +517,11 @@
* \defgroup Common Common
* \brief Common classes, functions, properties and concepts
*/
- /*!
- * \ingroup Common
- * \defgroup Properties Properties
- * \brief Basic properties of all models in DuMu<sup>x</sup>
- */
+ /*!
+ * \ingroup Common
+ * \defgroup Properties Properties
+ * \brief Basic properties of all models in DuMu<sup>x</sup>
+ */
/* ***************** InputOutput ******************/
/*!
@@ -546,3 +546,27 @@
* \defgroup Parallel Parallel
* \brief Helpers for parallel runs with MPI
*/
+
+/* ***************** MultiDomain ******************/
+/*!
+ * \defgroup MultiDomain Multidomain simulations
+ * \brief Classes to run problems with multiple domains
+ *
+ * The multi domain module allows to couple regular DuMu<sup>x</sup> problems.
+ * Several coupling modes are currently available.
+ */
+ /*!
+ * \ingroup MultiDomain
+ * \defgroup EmbeddedCoupling Embedded mixed-dimension coupling mode
+ * \brief Couples problems of different dimensions where one or more lower-dimensional problems (lowdim) are embedded in a higher-dimensional domain (bulk). Examples are embedded one-dimensional networks for the simulation of blood tissue perfusion, or root-soil interaction, and embedded fracture models.
+ */
+ /*!
+ * \ingroup MultiDomain
+ * \defgroup FacetCoupling Conforming mixed-dimension facet coupling mode
+ * \brief Couples problems of different dimensions where one or more lower-dimensional problems (lowdim) live on the facets of the higher-dimensional domain (bulk). Examples are discrete facet conforming fracture models and problems with physics on a domain surface.
+ */
+ /*!
+ * \ingroup MultiDomain
+ * \defgroup BoundaryCoupling Boundary coupling mode
+ * \brief Couples problems of different or equal dimension that touch at the domain boundary. Examples are equal-dimension multi-physics problems like Darcy-Stokes coupling or PNM (pore network model)-Darcy coupling.
+ */