From 4f2b01453d415849ad7ba1aa27b07de92d22fb04 Mon Sep 17 00:00:00 2001 From: Sina Ackermann <sina.ackermann@iws.uni-stuttgart.de> Date: Fri, 17 Mar 2017 09:29:57 +0100 Subject: [PATCH] Merge branch 'handbook/improvementsForRelease' into 'master' Handbook/improvements for release See merge request !411 --- doc/handbook/0_dumux-handbook.tex | 6 +- doc/handbook/1_introduction.tex | 2 +- doc/handbook/2_detailedinstall.tex | 45 +- doc/handbook/2_quickinstall.tex | 15 +- doc/handbook/3_tutorialimplicit.tex | 6 +- doc/handbook/4_developingdumux.tex | 28 +- doc/handbook/4_guidelines.tex | 4 +- doc/handbook/4_structure.tex | 109 +- doc/handbook/5_fluidframework.tex | 6 - doc/handbook/5_grids.tex | 5 +- doc/handbook/5_models.tex | 2 +- doc/handbook/CMakeLists.txt | 1 - doc/handbook/dumux-handbook.bib | 2252 +++++++++++++-------------- 13 files changed, 1201 insertions(+), 1280 deletions(-) delete mode 100644 doc/handbook/5_fluidframework.tex diff --git a/doc/handbook/0_dumux-handbook.tex b/doc/handbook/0_dumux-handbook.tex index 2a94232654..cac88ce86d 100644 --- a/doc/handbook/0_dumux-handbook.tex +++ b/doc/handbook/0_dumux-handbook.tex @@ -13,6 +13,7 @@ \usepackage{graphicx} \usepackage{listings} \usepackage{makeidx} +\usepackage[square,numbers]{natbib} \usepackage{pdflscape} \usepackage{rotating} \usepackage{subfig} @@ -39,7 +40,7 @@ % Dune and Dumux logo \newcommand{\Dune}{{DUNE}\xspace} \newcommand{\Dumux}{\texorpdfstring{Du\-Mu$^\text{x}$\xspace}{DuMuX\xspace}} -\newcommand{\DumuxVersion}{2.10} +\newcommand{\DumuxVersion}{2.11} \definecolor{dumuxYellow}{HTML}{E19417} \definecolor{dumuxBlue}{HTML}{0C73CF} @@ -142,10 +143,9 @@ in deeper modifications of underlying \Dumux models, classes, functions, etc. \input{5_spatialdiscretizations} \input{5_stepsofasimulation} \input{5_propertysystem} -\input{5_fluidframework} \input{5_grids} -\bibliographystyle{plain} +\bibliographystyle{plainnat} \bibliography{dumux-handbook} \printindex \end{document} diff --git a/doc/handbook/1_introduction.tex b/doc/handbook/1_introduction.tex index 5ef762f3fd..526f021c8a 100644 --- a/doc/handbook/1_introduction.tex +++ b/doc/handbook/1_introduction.tex @@ -18,7 +18,7 @@ for all possible cases, so \Dumux is build on top of \Dune, the \textbf{D}istributed and \textbf{U}nified \textbf{N}umerics \textbf{E}nvironment~\cite{DUNE-HP}. \Dune provides a generic interface to many existing grid management libraries such as UG~\cite{UG-HP}, -ALUGrid~\cite{ALUGRID-HP} and a few more. +ALUGrid~\cite{ALUGRID-HP,alugrid2016} and a few more. DUNE also extensively uses template programming in order to achieve minimal overhead when accessing the underlying grid libraries\footnote{In fact, the performance penalty resulting from the diff --git a/doc/handbook/2_detailedinstall.tex b/doc/handbook/2_detailedinstall.tex index 625f4e563b..4b601b736b 100644 --- a/doc/handbook/2_detailedinstall.tex +++ b/doc/handbook/2_detailedinstall.tex @@ -14,9 +14,10 @@ Please check in said paragraph whether you can fulfill them. In addition, sectio In a technical sense \Dumux is a module of \Dune. Thus, the installation procedure of \Dumux is the same as that of \Dune. -Details regarding the installation of \Dune are provided on the \Dune website \cite{DUNE-INST}. +Details regarding the installation of \Dune are provided on the \Dune website \cite{DUNE-HP}. If you are interested in more details about the build system that is used, -they can be found in the {\Dune} CMake FAQs \cite{DUNE-CMAKE} and CMake's documentation \cite{CMAKE-DOC}. +they can be found in the \Dune buildsystem documentation\footnote{\url{https://www.dune-project.org/buildsystem/}} and +CMake's documentation\footnote{\url{https://cmake.org/documentation/}}. All \Dune modules, including \Dumux, get extracted into a common directory, as it is done in an ordinary \Dune installation. @@ -122,7 +123,7 @@ Then, enter the previously created directory and check out the desired modules. As you see below, the check-out uses two different servers for getting the sources, one for \Dune and one for \Dumux. The \Dune modules of the stable 2.4 release branch are checked out as described -on the \Dune website \cite{DUNE-DOWNLOAD-GIT}: +on the \Dune website \cite{DUNE-HP}: \begin{lstlisting}[style=Bash] $ mkdir DUNE-ROOT @@ -137,13 +138,14 @@ $ git clone -b releases/2.0 https://gitlab.dune-project.org/PDELab/dune-pdelab.g \end{lstlisting} The newest and maybe unstable developments are also provided in these repositories and can be found in the \emph{master} branch. -Please check the \Dune website \cite{DUNE-DOWNLOAD-GIT} for further information. We always try to keep up with the latest developments of \Dune. +Please check the \Dune website \cite{DUNE-HP} for further information. We always try to keep up with the latest developments of \Dune. However, the current \Dumux release is based on the stable 2.4 release and it might not compile without further adaptations using the newest versions of \Dune. Furthermore, if you wish to install the optional \Dune Grid-Howto which provides a tutorial on the Dune grid interface, act similar. -The \texttt{dumux} module is checked out as described below (see also the \Dumux website \cite{DUMUX-HP}). +The \texttt{dumux} module is checked out as described below (see also the \Dumux website: +\url{http://www.dumux.org/}). Its file tree has to be created in the \Dune-Root directory, where the \Dune modules have also been checked out to. Subsequently, the next command is executed there, too. The dumux root directory is called \texttt{dumux} here. @@ -198,7 +200,7 @@ This enhances \texttt{dumux} by providing maybe unstable code from the developer Doxygen documentation is done by especially formatted comments integrated in the source code, which can get extracted by the program \texttt{doxygen}. Beside extracting these comments, \texttt{doxygen} builds up a web-browsable code structure documentation -like class hierarchy of code displayed as graphs, see \cite{DOXYGEN-HP}. +like class hierarchy of code displayed as graphs, see \url{http://www.stack.nl/~dimitri/doxygen/}. The Doxygen documentation of a module can be built, if \texttt{doxygen} is installed, by running \texttt{dunecontrol}, entering the \texttt{build-*}directory, and execute @@ -208,13 +210,16 @@ This should also work for other \Dune modules. \subsubsection{Handbook} To build the \Dumux handbook go into the \texttt{build-}directory and -run \texttt{make doc} or \texttt{make dumux-handbook\_pdf}. The pdf can then be found -in \texttt{MODULE\_BUILD\_DIRECTORY/doc/handbook/dumux-handbook.pdf}. +run \texttt{make doc} or \texttt{make 0\_dumux-handbook\_pdf}. The pdf can then be found +in \texttt{MODULE\_BUILD\_DIRECTORY/doc/handbook/0\_dumux-handbook.pdf}. \subsection{External Libraries and Modules} \label{sec:external-modules-libraries} The libraries described below provide additional functionality but are not generally required to run \Dumux. -If you are going to use an external library check the information provided on the \Dune website \cite{DUNE-EXT-LIB}. -If you are going to use an external \Dune module the website on external modules \cite{DUNE-EXT-MOD} can be helpful. +If you are going to use an external library check the information provided on the \Dune website% +\footnote{DUNE: External libraries, \url{https://www.dune-project.org/doc/external-libraries/}}. +If you are going to use an external \Dune module the website on external modules% +\footnote{DUNE: External modules, \url{https://www.dune-project.org/groups/external/}} +can be helpful. Installing an external library can require additional libraries which are also used by \Dune. For some libraries, such as BLAS or MPI, multiple versions can be installed on the system. @@ -236,40 +241,40 @@ and some more libraries and tools which are prerequisites for their use. \begin{itemize} \item \textbf{dune-ALUGrid}: Grid library, comes as a \Dune module. - The parallel version needs also a graph partitioner, such as \texttt{ParMETIS}. - Download: \texttt{\url{https://gitlab.dune-project.org/extensions/dune-alugrid}} + The parallel version needs also a graph partitioner, such as {ParMETIS}. + Download: \url{https://gitlab.dune-project.org/extensions/dune-alugrid} \item \textbf{dune-foamgrid}: External grid module. One- and two-dimensional grids in a physical space of arbitrary dimension; non-manifold grids, growth, element paramterizations, and movable vertices. This makes FoamGrid the grid data structure of choice for simulating structures such as foams, discrete fracture networks, or network flow problems. - Download: \texttt{\url{https://gitlab.dune-project.org/extensions/dune-foamgrid}} + Download: \url{https://gitlab.dune-project.org/extensions/dune-foamgrid} \item \textbf{\Dune-multidomaingrid} and \textbf{\Dune-multidomain}: External modules which offer a meta grid that has different sub-domains. Each sub-domain can have a local operator that is coupled by a coupling condition. They are used for multi-physics approaches or domain decomposition methods. Download: - \texttt{\url{https://github.com/smuething/dune-multidomaingrid}} - and \texttt{\url{https://github.com/smuething/dune-multidomain}} + \url{https://github.com/smuething/dune-multidomaingrid} + and \url{https://github.com/smuething/dune-multidomain} \item \textbf{\Dune-PDELab}: External module to write more easily discretizations. PDELab provides a sound number of discretizations like FEM or discontinuous Galerkin methods. - Download: \texttt{\url{http://www.dune-project.org/pdelab}} + Download: \url{https://gitlab.dune-project.org/pdelab/dune-pdelab} \item \textbf{PARDISO}: External library for solving linear equations. The package PARDISO is a thread-safe, high-performance, robust, memory efficient and easy to use software for solving large sparse symmetric and asymmetric linear systems of equations on shared memory multiprocessors. The precompiled binary - can be downloaded after personal registration from the PARDISO website: \texttt{\url{http://www.pardiso-project.org}} + can be downloaded after personal registration from the PARDISO website: \url{http://www.pardiso-project.org} \item \textbf{SuperLU}: External library for solving linear equations. SuperLU is a general purpose library for the direct solution of large, sparse, non-symmetric systems of linear equations. - Download: \texttt{\url{http://crd.lbl.gov/~xiaoye/SuperLU}} + Download: \url{http://crd.lbl.gov/~xiaoye/SuperLU} \item \textbf{UMFPack}: External library for solving linear equeations. It is part of SuiteSparse. \item \textbf{UG}: External library for use as grid. UG is a toolbox for unstructured grids, released under GPL. To build UG the tools \texttt{lex}/\texttt{yacc} or the GNU variants of \texttt{flex}/\texttt{bison} must be provided. - Download: \texttt{\url{http://www.iwr.uni-heidelberg.de/frame/iwrwikiequipment/software/ug}} + Download: \url{https://gitlab.dune-project.org/staging/dune-uggrid} \end{itemize} The following are dependencies of some of the used libraries. You will need them @@ -289,4 +294,4 @@ depending on which modules of \Dune and which external libraries you use. \item \textbf{Compilers}: Beside \texttt{g++}, \Dune can be built with Clang from the LLVM project and Intel \Cplusplus compiler. C and Fortran compilers are needed for some external libraries. As code of different compilers is linked together they have to be be compatible with each other. -\end{itemize} \ No newline at end of file +\end{itemize} diff --git a/doc/handbook/2_quickinstall.tex b/doc/handbook/2_quickinstall.tex index 7a0b681fa0..ec0a7d25fb 100644 --- a/doc/handbook/2_quickinstall.tex +++ b/doc/handbook/2_quickinstall.tex @@ -11,7 +11,7 @@ instructions in Section \ref{install}. The shell-script \texttt{checkout-dumux} facilitates setting up a {\Dune}/{\Dumux} directory tree. -It is available after obtaining a download link, but not directly from the \texttt{dumux} website \cite{DUMUX-DOWNLOAD}. +It is available after obtaining a download link via \url{http://www.dumux.org/download/}. For example the second line below will check out the required \Dune modules and \texttt{dumux}, \texttt{dumux-devel} and the \texttt{external} folder, which contains some useful external software and libraries. Again, \texttt{joeuser} needs to be replaced by the actual user name. @@ -24,19 +24,20 @@ Be aware that you cannot get \texttt{dumux-devel} or the external libraries from you have an GitLab account with the right privileges. If you want to install \Dune and \Dumux without the help of \texttt{checkout-dumux} script a complete installation -guide can be found in chapter \ref{install} or on the \Dune website \cite{DUNE-INST}. +guide can be found in chapter \ref{install}. \subsection{Build of \Dune and \Dumux} \label{buildIt} -Building of \Dune and \Dumux is done by the command-line script \texttt{dunecontrol} as described in \Dune Installation Notes \cite{DUNE-INST}. -More details about the build-system can be found in the \Dune CMake FAQs \cite{DUNE-CMAKE}. +Building of \Dune and \Dumux is done by the command-line script \texttt{dunecontrol} as described in +\Dune Installation Notes\footnote{\url{https://www.dune-project.org/doc/installation/}}. +More details about the build-system can be found in the \Dune buildsystem documentation\footnote{\url{https://www.dune-project.org/buildsystem/}}. If something fails during the execution of \texttt{dunecontrol} feel free to report it to the \Dune or \Dumux developer mailing list, but also try to include error details. It is possible to compile \Dumux with nearly no explicit options to the build system. -However, for the successful compilation of \Dune and \Dumux, it is currently necessary to pass the -the option \texttt{-fno-strict-aliasing} to the \Cplusplus compiler -\cite{WIKIPED-ALIASING}, which is done here via a command-line argument to \texttt{dunecontrol}: +However, for the successful compilation of \Dune and \Dumux, it is currently necessary to pass +the option \texttt{-fno-strict-aliasing} to the \Cplusplus compiler, +which is done here via a command-line argument to \texttt{dunecontrol}: \begin{lstlisting}[style=Bash] $ # make sure you are in the directory DUNE-Root $ ./dune-common/bin/dunecontrol --configure-opts="CXXFLAGS=-fno-strict-aliasing" --use-cmake all diff --git a/doc/handbook/3_tutorialimplicit.tex b/doc/handbook/3_tutorialimplicit.tex index 03196ac4ae..f908bceec9 100644 --- a/doc/handbook/3_tutorialimplicit.tex +++ b/doc/handbook/3_tutorialimplicit.tex @@ -146,7 +146,7 @@ two-phase model uses the \texttt{TwoPImmiscibleFluidSystem}, which assumes immiscibility of the phases, but requires the components used for the wetting and non-wetting phases to be explicitly set. In this case, liquid water which uses the relations from -IAPWS'97~\cite{IAPWS1997} is chosen as the wetting phase on line +IAPWS'97~\cite{IAPWS-HP} is chosen as the wetting phase on line \ref{tutorial-implicit:wettingPhase} and liquid oil is chosen as the non-wetting phase on line \ref{tutorial-implicit:nonwettingPhase}. The last property, which is set in line \ref{tutorial-implicit:gravity}, @@ -248,7 +248,7 @@ of mixtures such as density or enthalpy are of interest. These interactions are defined by {\em fluid systems}, which are located in \verb+dumux/material/fluidsystems+. A more thorough overview of the \Dumux fluid framework can be found -at \url{http://www.dumux.org/doxygen-stable/html-2.10/modules.php} +at \url{http://www.dumux.org/doxygen-stable/html-\DumuxVersion/modules.php} %in chapter~\ref{sec:fluidframework}. % In this example, a class for the definition of a two-phase system is used. This allows for the choice @@ -412,7 +412,7 @@ To do that, you have to select different components via the property system in t If you want to take a closer look on how the fluid classes are defined and which substances are already available please browse through the files in the directory \texttt{/dumux/material/components} and read -the doxygen documentation \url{http://www.dumux.org/doxygen-stable/html-2.10/modules.php}. +the doxygen documentation \url{http://www.dumux.org/doxygen-stable/html-\DumuxVersion/modules.php}. %chapter~\ref{sec:fluidframework}. \item \textbf{Use a Full-Fledged Fluid System} \\ diff --git a/doc/handbook/4_developingdumux.tex b/doc/handbook/4_developingdumux.tex index 4232a69197..e5c02ee1cb 100644 --- a/doc/handbook/4_developingdumux.tex +++ b/doc/handbook/4_developingdumux.tex @@ -3,19 +3,20 @@ \subsection{Communicate with \Dumux Developers} -\paragraph{GitLab Issues} -The bug-tracking system \emph{GitLab Issues} offers the possibility to report bugs or -discuss new development requests. Feel free to register (if you don't have a \emph{Git} account alreay) and to constribute +\paragraph{Issues and Bug Tracking} +The bug-tracking system \emph{GitLab Issues} offers the possibility to report bugs or discuss new development requests. +Feel free to register (if you don't have a \emph{Git} account already) and to constribute at \url{https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/issues}. -\paragraph{Flyspray} -The bug-tracking system \emph{Flyspray} has been replaced by \emph{GitLab Issues} and will not -be used anymore. +\paragraph{Commits, Merges, etc.} +To be up-to-date with the latest changes made to any git-repository you can use RSS Feeds. +Simply click on \emph{Issues} or \emph{Activity} and then select a tab you are interested in +and use your favorite RSS-application for receiving the news. \paragraph{Automatic Testing Dashboard} The automatic testing using \emph{BuildBot} helps to constantly check the \Dumux problems for compiling and running correctly. It is available at -\url{http://www.dumux.org/dashboard.php}. +\url{https://git.iws.uni-stuttgart.de/buildbot/#/builders}. \paragraph{The General Mailing List:} If you have questions, specific problems (which you really struggle to solve on your own), @@ -24,11 +25,6 @@ You can subscribe to the mailing list via \url{https://listserv.uni-stuttgart.de/mailman/listinfo/dumux}, then you will be informed about upcoming releases or events. -\paragraph{The Commit Mailing List:} -If you want to be informed about \Dumux-commits you can subscribe to the mailing list: -\url{https://listserv.uni-stuttgart.de/mailman/listinfo/dumux-commits}. - - \subsection{Tips and Tricks} \Dumux users and developers at the LH2 are also referred to the internal Wiki for more information. @@ -98,10 +94,10 @@ Dune::dinfo << "message"; // will NOT be printed \end{lstlisting} \paragraph{Make headercheck:} -To check one header file for all necessary includes to compile the contained -code, use \texttt{make headercheck}. Go to the top level in your build-directory -and type \texttt{make headercheck} to check all headers or press 'tab' to use the -auto-completion to search for a specific header. +To check one header file for all necessary includes to compile the contained code, use \texttt{make headercheck}. +Include the option \texttt{-DENABLE\_HEADERCHECK=1} in your opts file and run \texttt{dunecontrol}. +Then go to the top level in your build-directory and type \texttt{make headercheck} to check all headers +or press 'tab' to use the auto-completion to search for a specific header. \paragraph{Naming conventions} General guidelines for naming conventions are specified in Section \ref{sc_guidelines}. diff --git a/doc/handbook/4_guidelines.tex b/doc/handbook/4_guidelines.tex index a710f08549..76573f9033 100644 --- a/doc/handbook/4_guidelines.tex +++ b/doc/handbook/4_guidelines.tex @@ -3,8 +3,8 @@ Writing code in a readable manner is very important, especially for future code developers (e.g. for adding features, debugging, etc.). This section is inspired by the DUNE coding guidelines -\url{http://www.dune-project.org/doc/devel/codingstyle.html}, which is strongly -recommended. +% this site is currently down (27.02.2017), hope it will be online soon again +\url{http://www.dune-project.org/doc/devel/codingstyle.html}, which is strongly recommended. \paragraph{Documentation:} Please document freely what each part of your code does. All comments/ documentation diff --git a/doc/handbook/4_structure.tex b/doc/handbook/4_structure.tex index d685f33b09..66d97a6c83 100644 --- a/doc/handbook/4_structure.tex +++ b/doc/handbook/4_structure.tex @@ -3,65 +3,18 @@ \Dumux has the following folder structure, which is similar to other \Dune modules. \begin{itemize} -\item \texttt{bin}: contains binaries, e.g. used for the automatic testing +\item \texttt{bin}: binaries, e.g. used for the automatic testing, postprocessing, installation \item \texttt{cmake}: the configuration options for building \Dumux -\item \texttt{doc}: contains the Doxygen documentation (\texttt{doc/doxygen/html/index.html}), - this handbook, and various logos +\item \texttt{doc}: files necessary for the Doxygen documentation and this handbook, and various logos \item \texttt{dumux}: the main folder, containing the source files, see \ref{fig:dumux-structure} for a visualized structure. For more information on the models have a look at the Doxygen documentation. - \begin{itemize} - \item \texttt{common}: general methods shared by all models, - like the \texttt{start.hh} or the time manager - - \item \texttt{freeflow}: single-phase free-flow models. All models are discretized - fully implicitly using the box-method. - - \item \texttt{geomechanics}: models for solving rock mechanics and flow. - - \item \texttt{implicit}: contains the general methods shared - by all implicit models, together with specilized methods - for the two discretization types \texttt{box} and \texttt{cellcentered}. - The \texttt{adaptive} folder contains methods for grid adaption. - The specialized model files can be found - at \texttt{porousmediumflow/model of interest/implicit/}, - \texttt{freeflow/model of interest/}, or \texttt{geomechanics/model of interest/}. - - \item \texttt{io}: additional in-/output possibilities like restart files, - gnuplot-interface and a VTKWriter. - - \item \texttt{linear}: contains linear solver backends. - - \item \texttt{material}: all material parameters and constitutive equations. - Properties of a pure chemical (pseudo)substance (e.g. water, air) are located - in \texttt{components}. The fluidsystems collect information from the \texttt{components} and - \texttt{binarycoefficients} (like Henry coefficients), and combines them with fluid phase characteristics - (e.g. viscosity, density). - The folder \texttt{spatialparams} contains all spatially dependend variables, like permeability and porosity. - The class in \texttt{implicitspatialparameters.hh} provides spatial averaging routines. - Constitutive relations are found in \texttt{fluidmatrixinteractions}. - - \item \texttt{multidomain}: coupling handling and coupling conditions for connecting - different model types in different subdomains. - - \item \texttt{nonlinear}: Newton's method. - - \item \texttt{parallel}: helper files for parallel simulations. - - \item \texttt{porousmediumflow}: contains all models for porous media setups. - - \item \texttt{sequential}: contains the general methods shared - by all sequential models. The specialized model files can be found - at \texttt{porousmediumflow/model of interest/sequential/}. -\end{itemize} - \item \texttt{test}: tests for each numerical model and some functionality. The structure is equivalent to the dumux folder, the \texttt{references} folder contains solutions for the automatic testing. Each test program consist of source - \texttt{*.cc}, the problem definition \texttt{*problem.hh}, the definition of the spatially dependent - parameters \texttt{*spatialparameters.hh} and an input file \texttt{*.input}. + \texttt{*.cc}, the problem definition \texttt{*problem.hh}, and an input file \texttt{*.input}. + If necessary, spatially dependent parameters are defined in \texttt{*spatialparameters.hh}. For more detailed descriptions of the tests, please have a look at the Doxygen documentation. - \item \texttt{tutorial}: contains the tutorials described in Chapter \ref{chp:tutorial}. \end{itemize} @@ -102,27 +55,30 @@ [.\node[draw=dumuxYellow, ultra thick] {dumux}; [.\node[FirstLevel] {common}; \node[ThirdLevel] { - Common files of the implicit (box and cell centered) models and the - sequential models: time integration, start routine, the property - system, ...}; + Common files of the implicit and the sequential models: + time integration, start routine \texttt{start.hh}, the property system, ...}; ] [.\node[FirstLevel] {freeflow}; [.\node[SecondLevel] {\emph{models}}; - \node[ThirdLevel] {Specific model definition for free flow problems using the (Navier-) Stokes - and algebraic turbulence models.}; + \node[ThirdLevel] {Single-phase free flow models using Navier-Stokes + and algebraic turbulence models. + All models are discretized with the box-method.}; ] ] [.\node[FirstLevel] {geomechanics}; [.\node[SecondLevel] {\emph{models}}; - \node[ThirdLevel] {Specific model definition for coupled flow and geomechnics simulations.}; + \node[ThirdLevel] {Specific model files for coupling flow and rock mechanisms.}; ] ] [.\node[FirstLevel] {implicit}; % [.\node[SecondLevel] {\emph{models}}; \node[ThirdLevel] {Common functionality of cell centered and box formulation: - assembling in implicitlocaljacobian.hh, evaluation of partial derivative - in implicitlocalresidual.hh, base classes for model and problem definition.}; + assembling in localjacobian.hh, evaluation of partial derivative + in localresidual.hh, base classes for model and problem definition.}; % ] + [.\node[SecondLevel] {adaptive}; + \node[ThirdLevel] {Contains the methods for grid adaption.}; + ] [.\node[SecondLevel] {box}; \node[ThirdLevel] {Specific files for the gerenal fully implicit boxmethod: assembler, dual mesh geometry in fvelementgeometry.hh, @@ -133,10 +89,13 @@ mesh geometry in fvelementgeometry.hh, base classes for model and problem definition.}; ] + [.\node[SecondLevel] {cornerpoint}; + \node[ThirdLevel] {Files need for handling cornerpoint grids.}; + ] ] [.\node[FirstLevel] {io}; - \node[ThirdLevel] {Additional in-/output possibilities like restart files, gnuplot-interface - and a VTKWriter extension. Grid Creator files.}; + \node[ThirdLevel] {Additional in-/output possibilities like restart files, gnuplot-interface, + VTKWriter extensions and files for grid generation.}; ] [.\node[FirstLevel] {linear}; \node[ThirdLevel] {Linear solver backend.}; @@ -146,13 +105,15 @@ \node[ThirdLevel] {Binary coefficients (like binary diffusion coefficients) and those needed for the constitutive relationships (e.g. Henry coefficient)}; ] + [.\node[SecondLevel] {chemistry}; + \node[ThirdLevel] {Files needed to account for, e.g. electrochemical processes as in a fuel cell.}; + ] [.\node[SecondLevel] {components}; \node[ThirdLevel] {Properties of a pure chemical substance (e.g. water) or pseudo substance (e.g. air).}; ] [.\node[SecondLevel] {constraintsolvers}; - \node[ThirdLevel] {Constraint solvers specify a well defined set of input variables - and make sure that the resulting fluid state is consistent with a + \node[ThirdLevel] {Constraint solvers to make sure that the resulting fluid state is consistent with a given set of thermodynamic equations.}; ] [.\node[SecondLevel] {eos}; @@ -161,16 +122,16 @@ and density.}; ] [.\node[SecondLevel] {fluidmatrixint.}; - \node[ThirdLevel] {Constitutive relationships (e.g. capillary pressure - saturation - curve}; + \node[ThirdLevel] {Constitutive relationships (e.g. capillary pressures, relative permeabilities}; ] [.\node[SecondLevel] {fluidstates}; - \node[ThirdLevel] {Fluid states are responsible for representing the complete thermodynamic + \node[ThirdLevel] {Fluid states are responsible for caching the thermodynamic configuration of a system at a given spatial and temporal position.}; ] [.\node[SecondLevel] {fluidsystems}; \node[ThirdLevel] {Fluid systems express the thermodynamic relations between quantities.}; ] - [.\node[SecondLevel] {spatialparameters}; + [.\node[SecondLevel] {spatialparams}; \node[ThirdLevel] {Base class for all spatially dependent variables, like permeability and porosity. Includes spatial averaging routines. All other properties are specified in the specific files of the respective models.}; @@ -178,8 +139,8 @@ ] [.\node[FirstLevel] {multidomain}; [.\node[SecondLevel] {\emph{models}}; - \node[ThirdLevel] {Localoperators, which implement the correct coupling and - communication between the submodels, and model specific properties.}; + \node[ThirdLevel] {Localoperators, which implement the coupling and communication + between models in different subdomains, and model specific properties.}; ] [.\node[SecondLevel] {common}; \node[ThirdLevel] {The multidomain wrappers, generic functions, and properties.}; @@ -192,22 +153,16 @@ \node[ThirdLevel] {Newton's method.}; ] [.\node[FirstLevel] {parallel}; - \node[ThirdLevel] {Files for parallel programming.}; - ] + \node[ThirdLevel] {Helper files for parallel simulations.}; + ] [.\node[FirstLevel] {porousmediumflow}; [.\node[SecondLevel] {\emph{models}}; \node[ThirdLevel] {Specific model definition for porous medium flow simulations, - in both \emph{implicit} or \emph{sequential} formulation: + in both \texttt{implicit} or \texttt{sequential} formulation: implementation of equations, model specific properties and indices.}; ] ] - [.\node[FirstLevel] {sequential}; -% [.\node[SecondLevel] {\emph{models}}; - \node[ThirdLevel] { - General model definitions for the sequential formulation.}; -% ] - ] ] \end{tikzpicture} \caption{Structure of the directory \texttt{dumux} containing the \Dumux source files.} diff --git a/doc/handbook/5_fluidframework.tex b/doc/handbook/5_fluidframework.tex deleted file mode 100644 index 2a242f22e8..0000000000 --- a/doc/handbook/5_fluidframework.tex +++ /dev/null @@ -1,6 +0,0 @@ -\section{Material and Fluid Framework} -\label{sec:fluidframework} - -Detailed explanations for the \Dumux material and fluid framework can be found in the Doxygen documentation via \texttt{Modules -> Material and Fluid Framework}. - - diff --git a/doc/handbook/5_grids.tex b/doc/handbook/5_grids.tex index 9e4fd4161a..8ba3270638 100644 --- a/doc/handbook/5_grids.tex +++ b/doc/handbook/5_grids.tex @@ -8,7 +8,7 @@ construction of a structured grid is fairly easy. We will subsequently introduce and briefly mention how to customize and deal with common other grid formats. \subsection{Supported file formats} -\Dumux can read grids from file using the Dune Grid Format (DGF) or the Gmsh mesh format (only unstructured grids). +\Dumux can read grids from file using the Dune Grid Format (DGF) or the Gmsh mesh format. \subsubsection{Dune Grid Format} Most of our \Dumux tests and tutorials use the Dune Grid Format (DGF) to read in grids. A detailed description @@ -125,8 +125,7 @@ To add the parameters to your DGF you have to make changes to the header \texttt \href{http://www.topologica.org/toplog/wp/}{ArtMesh} is a 3D mesh generation software. It has its own mesh file format which can be read by \Dumux via the \texttt{ArtGridCreator}. Traditionally it was used within \Dumux for fracture simulations with the discrete fracture matrix model (\texttt{2pdfm}). A detailed description of the fracture network creation and gridding -can be found for example in the dissertation of \href{http://elib.uni --stuttgart.de/opus/frontdoor.php?source_opus=8047&la=de}{Tatomir}, pp. 68. +can be found for example in \cite{Tatomir2012a}, pp. 68. \subsubsection{ICEM} For complex geometries a graphical tool to create grids might be appropriate. One possibility to mesh for example CAD diff --git a/doc/handbook/5_models.tex b/doc/handbook/5_models.tex index fdac66149f..b3e5b7d2e3 100644 --- a/doc/handbook/5_models.tex +++ b/doc/handbook/5_models.tex @@ -127,7 +127,7 @@ $\boldsymbol{v}_\alpha$ & velocity (Darcy or free flow)& & \\ \subsection{Available Models} We distinguish fully-implicit and sequential models. A list of all available models can be found in the Doxygen documentation at -\url{http://www.dumux.org/doxygen-stable/html-2.10/modules.php}. +\url{http://www.dumux.org/doxygen-stable/html-\DumuxVersion/modules.php}. The documentation includes a detailed description for every model. \subsubsection{Fully-Implicit Models} diff --git a/doc/handbook/CMakeLists.txt b/doc/handbook/CMakeLists.txt index c639c9fc34..f2f89dcb57 100644 --- a/doc/handbook/CMakeLists.txt +++ b/doc/handbook/CMakeLists.txt @@ -18,7 +18,6 @@ set(TEX_INPUTS 4_restartsimulations.tex 4_structure.tex 5_stepsofasimulation.tex - 5_fluidframework.tex 5_grids.tex 5_models.tex 5_propertysystem.tex diff --git a/doc/handbook/dumux-handbook.bib b/doc/handbook/dumux-handbook.bib index 5cda692868..ca3a33c9f6 100644 --- a/doc/handbook/dumux-handbook.bib +++ b/doc/handbook/dumux-handbook.bib @@ -1,12 +1,8 @@ -% This file was created with JabRef 2.6. % Encoding: UTF-8 -@BOOK{DEBOOR1978, - title = {{A Practical Guide to Splines}}, - publisher = {Springer}, - year = {1978}, - author = {C. {de Boor}}, - edition = {1} +@MISC{STL-REF-HP, + title = {{A {STL} Reference: \url{http://www.cplusplus.com/reference/stl/}}}, + key = {STL} } @ARTICLE{VANGENUCHTEN1980, @@ -20,270 +16,172 @@ key = {Gen80} } -@PHDTHESIS{A3:oelmann:2006a, - author = {\"Olmann, Ulrich}, - title = {{Behandlung anisotroper Mobilit\"aten als Resultat von Upscalingverfahren - mittels Mehrpunktflu{\ss}approximationen}}, - school = {Institut f\"ur Wasserbau, Universit\"at Stuttgart}, - year = {to be published 2006} -} - -@PHDTHESIS{wolff2013a, - author = {Markus Wolff}, - title = {{ Multi-scale modeling of two-phase flow in porous media including capillary pressure effects}}, - school = {Institut f\"ur Wasser- und Umweltsystemmodellierung, Universit\"at Stuttgart}, - url = {http://elib.uni-stuttgart.de/opus/volltexte/2013/8661/}, - year = {2013} -} - - -@INBOOK{wolff2013b, - author={Wolff, Markus and Cao, Yufei and Flemisch, Bernd and Helmig, Rainer and Wohlmuth, Barbara}, - title={Multi-point flux approximation L-method in 3D: numerical convergence and application to two-phase flow through porous media}, - publisher = {De Gruyter}, - year={2013}, - pages={39--80}, - editor={P. Bastian, J. Kraus, R. Scheichl, and M. Wheeler}, - series = {Simulation of Flow in Porous Media: Applications in Energy and Environment} -} - - -@MISC{A3:oelmann:2006b, - author = {\"Olmann, U. and Aavatsmark, I. and Helmig, R.}, - title = {{Buckley-Leverett heterogen --- Konstruktion der L\"osung mit der - Charakteristikenmethode}}, - howpublished = {Preprint-Reihe des SFB404}, - month = {March}, - year = {2006}, - note = {2006/05} -} - -@ARTICLE{A3:aavatsmark:2002, - author = {Aavatsmark, Ivar}, - title = {{An introduction to multipoint flux approximations for quadrilateral - grids}}, - journal = {Computational Geosciences}, - year = {2002}, - volume = {6}, - pages = {405--432} +@PHDTHESIS{Fritz2010, + author = {J. Fritz}, + title = {{A Decoupled Model for Compositional Non-Isothermal Multiphase Flow + in Porous Media and Multiphysics Approaches for Two-Phase Flow}}, + school = {Universit\"at Stuttgart}, + year = {2010}, + owner = {rodrigog}, + timestamp = {2011.02.07} } -@ARTICLE{A3:aavatsmark:1996, - author = {Aavatsmark, I. and Barkve, T. and B{\o}e, {\O}. and Mannseth, T.}, - title = {{Discretization on Non-Orthogonal, Quadrilateral Grids for Inhomogeneous - Anisotropic Media}}, - journal = {Journal of Computational Physics}, - year = {1996}, - volume = {127}, - pages = {2--14} -} -@INPROCEEDINGS{A3:aavatsmark:1994, - author = {Aavatsmark, I. and Barkve, T. and B{\o}e, {\O}. and Mannseth, T.}, - title = {{Discretization on non-orthogonal, curvilinear grids for multiphase - flow}}, +@INPROCEEDINGS{A3:edwards:1994, + author = {Edwards, M. G. and Rogers, C. F.}, + title = {{A flux continuous scheme for the full tensor pressure equation}}, booktitle = {Proc.\ of the 4th European Conf.\ on the Mathematics of Oil Recovery}, year = {1994}, address = {Norway} } -@ARTICLE{A3:acosta:2006, - author = {Acosta, M. and Merten, C. and Eigenberger, G. and Class, H. and Helmig, - R. and Thoben, B. and M\"uller-Steinhagen, H.}, - title = {{Modeling non-isothermal two-phase multicomponent flow in the cathode - of PEM fuel cells}}, - journal = {Journal of Power Sources}, - year = {2006}, - pages = {in print}, - url={https://dx.doi.org/10.1016/j.jpowsour.2005.12.068} +@Article{BASTIAN2008, + author = {P. Bastian and M. Blatt and A. Dedner and C. Engwer and R. Kl\"{o}fkorn and R. Kornhuber and M. Ohlberger and O. Sander}, + title = {{A Generic Grid Interface For Parallel and Adaptive Scientific Computing. Part II: implementation and tests in {DUNE}}}, + journal = {Computing}, + year = {2008}, + volume = {82}, + number = {2}, + pages = {121--138}, + doi = {10.1007/s00607-008-0004-9}, + url = {http://link.springer.com/article/10.1007%2Fs00607-008-0004-9} } -@article{adams2002, - title={{Equations of state for basin geofluids: algorithm review and intercomparison for brines}}, - author={Adams, J. 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September 2003, + Bauhaus-Universit\"at Weimar)}}, + year = {2004}, + editor = {Schanz, T.}, + publisher = {Springer-Verlag}, + note = {ISBN: 3-540-21122-5} } -@article{ambrose1989, - title={{Vapour pressures up to their critical temperatures of normal alkanes and 1-alkanols}}, - author={Ambrose, D. and Walton, J.}, - journal={Pure and Applied Chemistry}, - volume={61}, - number={8}, - pages={1395--1403}, - year={1989}, - url={https://dx.doi.org/10.1351/pac198961081395} +@article{span1996, + title={{A new equation of state for carbon dioxide covering the fluid region from the triple-point temperature to 1100 K at pressures up to 800 MPa}}, + author={Span, R. and Wagner, W.}, + journal={Journal of physical and chemical reference data}, + volume={25}, + number={6}, + pages={1509--1596}, + year={1996}, + publisher={AIP Publishing}, + url={https://dx.doi.org/10.1063/1.555991} } - -@BOOK{ANDERSON-CFD-95, - title = {{Computational Fluid Mechanics}}, - publisher = {McGraw-Hill}, - year = {1995}, - author = {J. 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W. and Jacobsen, R. T. and Wagner, W. and Yokozeki, A.}, + journal={Journal of Physical and Chemical Reference Data}, + volume={29}, + number={6}, + pages={1361--1433}, + year={2000}, + publisher={AIP Publishing}, + url={https://dx.doi.org/10.1063/1.1349047} } -@BOOK{BASTIAN1999, - title = {{Numerical Computation of Multiphase Flows in Porous Media}}, - publisher = {Habilitationsschrift, University of Kiel}, - year = {1999}, - author = {P. Bastian}, - edition = {1} -} - -@INBOOK{A3:bastian:1997, - pages = {27--40}, - title = {{UG: A flexible software toolbox for solving partial differential - equations.}}, - publisher = {Springer Verlag}, - year = {1997}, - author = {Bastian, P. and Birken, K. and Lang, S. and Johannsen, K. and Neuss, - N. and Rentz-Reichert, H. and Wieners, C.}, - volume = {1}, - series = {Computing and Visualization in Science} -} - -@ARTICLE{BASTIAN2008, - author = {P. Bastian and M. Blatt and A. Dedner and C. Engwer and R. Kl\"{o}fkorn - and R. Kornhuber and M. Ohlberger and O. Sander}, - title = {{A Generic Grid Interface For Parallel and Adaptive Scientific Computing. - Part II: implementation and tests in {DUNE}}}, - journal = {Computing}, - year = {2008}, - volume = {82}, - pages = {121--138}, - number = {2} -} - -@INBOOK{A3:bastian:2000, - pages = {52--71}, - title = {{Numerical Simulation of Multiphase Flow in Fractured Porous Media.}}, - publisher = {Springer Verlag}, - year = {2000}, - author = {Bastian, P. and Chen, Z. and Ewing, R. E. and Helmig, R. and Jakobs - H. and Reichenberger V.}, - series = {Lecture Notes in Physics, Chen, Ewing and Shi (eds.)} -} - -@ARTICLE{A3:bastian:1999, - author = {Bastian, P. and Helmig, R.}, - title = {{Efficient Fully-Coupled Solution Techniques for Two Phase Flow in - Porous Media. Parallel Multigrid Solution and Large Scale Computations}}, - journal = {Advances in Water Resources}, - year = {1999} -} - -@ARTICLE{BASTIAN-HELMIG1999, - author = {P. Bastian and R. Helmig}, - title = {{Efficient Fully-Coupled Solution Techniques for Two Phase Flow in - Porous Media. Parallel Multigrid Solution and Large Scale Computations}}, - journal = {Advances in Water Resources}, - year = {1999}, - volume = {23}, - pages = {199--216}, - number = {3} -} - -@article{batzle1992, - title={{Seismic properties of pore fluids}}, - author={Batzle, M. and Wang, Z.}, - journal={Geophysics}, - volume={57}, - number={11}, - pages={1396--1408}, - year={1992}, - publisher={Society of Exploration Geophysicists}, - url={https://dx.doi.org/10.1190/1.1443207} -} - - -@ARTICLE{BEAUCHEMIN1995, - author = {S. S. Beauchemin and J. L. Barron}, - title = {{The computation of optical flow}}, - journal = {ACM Computing Surveys}, - year = {1995}, - volume = {27}, - pages = {433--466}, - number = {3} +@Article{rutqvist2002, + author = {Rutqvist, Jonny and Tsang, Chin-Fu}, + title = {{A study of caprock hydromechanical changes associated with CO2-injection into a brine formation}}, + journal = {Environmental Geology}, + year = {2002}, + volume = {42}, + number = {2-3}, + pages = {296--305}, + publisher = {Springer} } @ARTICLE{BELIAEV2001, @@ -297,47 +195,6 @@ number = {3} } -@PHDTHESIS{A3:bielinski:2006, - author = {Bielinski, A.}, - title = {{Numerical Simulation of CO$_2$ Sequestration in Geological Formations}}, - school = {Institut f\"ur Wasserbau, Universit\"at Stuttgart}, - year = {2006} -} - -@ARTICLE{A3:Braun:2002, - author = {Braun, C. and Helmig, R. and Manthey, S.}, - title = {{Determination of constitutive relationships for two-phase flow processes - in heterogeneous porous media with emphasis on the relative permeability-saturation-relationship}}, - journal = {Journal of Contaminant Hydrology}, - year = {2005} -} - -@BOOK{BRONSTEIN-93, - title = {{Taschenbuch der Mathematik}}, - publisher = {Verlag Harri Deutsch}, - year = {1993}, - author = {I. N. Bronstein and K. A. Semendjajew and G. Musiol and H. M\"{u}hlig}, - edition = {6} -} - -@TECHREPORT{BROOKS1964, - author = {R. H. Brooks and A. T. Corey.}, - title = {{Hydraulic properties of porous media}}, - institution = {Colorado State University, Fort Collins}, - year = {1964}, - note = {Hydrology Paper No. 3, 27 pp.} -} - -@ARTICLE{BURDINE1953, - author = {N. T. Burdine}, - title = {{Relative permeability calculations from pore size distribution data}}, - journal = {Transactions of the American Institute of Mining and Metallurgical - Engineers}, - year = {1953}, - volume = {198}, - pages = {71--78} -} - @INPROCEEDINGS{BURRI2006, author = {A. Burri and A. Dedner and R. Kl\"{o}fkorn and M. Ohlberger}, title = {{An efficient implementation of an adaptive and parallel grid in DUNE.}}, @@ -348,16 +205,49 @@ publisher = {Springer} } -@ARTICLE{CARMAN1937, - author = {Carman, Philip C.}, - title = {Fluid flow through granular beds}, - journal = {Transactions, Institution of Chemical Engineers}, - year = {1937}, - volume = {15}, - pages = {150--166}, - number = {}, - doi = {10.1016/S0263-8762(97)80003-2}, - note = {reprinted in \emph{Chemical Engineering Research and Design}, 75:S32--S48, 1997} + +@ARTICLE{TENG2000, + author = {H. Teng and T. S. Zhao}, + title = {{An extension of Darcy's law to non-Stokes flow in porous media}}, + journal = {Chemical engineering science}, + year = {2000}, + volume = {55}, + pages = {2727--2735}, + number = {14} +} + +@article{duan2003, + title={{An improved model calculating CO 2 solubility in pure water and aqueous NaCl solutions from 273 to 533 K and from 0 to 2000 bar}}, + author={Duan, Z. and Sun, R.}, + journal={Chemical geology}, + volume={193}, + number={3}, + pages={257--271}, + year={2003}, + publisher={Elsevier}, + url={https://dx.doi.org/10.1016/S0009-2541(02)00263-2} +} + +@Article{prydz1972, + author = {Prydz, R.}, + title = {{An Improved Oxygen Vapor Pressure Representation}}, + journal = {Metrologia}, + year = {1972}, + volume = {8}, + number = {1}, + pages = {1}, + publisher = {IOP Publishing}, + url = {https://dx.doi.org/10.1088/0026-1394/8/1/002} +} + +@ARTICLE{A3:aavatsmark:2002, + author = {Aavatsmark, Ivar}, + title = {{An introduction to multipoint flux approximations for quadrilateral + grids}}, + journal = {Computational Geosciences}, + year = {2002}, + volume = {6}, + pages = {405--432} } @ARTICLE{Chen2000, @@ -371,96 +261,79 @@ owner = {faigle} } -@BOOK{CLASS2007, - title = {{Models for Non-Isothermal Compositional Gas-Liquid Flow and Transport - in Porous Media}}, - publisher = {University of Stuttgart}, - year = {2007}, - author = {H. Class}, - edition = {1} -} - -@BOOK{A3:class:2001, - title = {{Theorie und numerische Modellierung nichtisothermer Mehrphasenprozesse - in NAPL-kontaminierten por\"osen Medien}}, - publisher = {Institut f\"ur Wasserbau, Universit\"at Stuttgart}, - year = {2001}, - author = {Class, H.}, - volume = {105}, - series = {Mitteilungsheft} +@ARTICLE{A3:deneef:1997, + author = {De Neef, M. and Molenaar, J.}, + title = {{Analysis of DNAPL infiltration in a Medium with a low-permeable lens}}, + journal = {Computational Geosciences}, + year = {1997}, + volume = {1}, + pages = {191-214} } -@PHDTHESIS{CLASS2001, - author = {H. Class}, - title = {{Theorie und numerische Modellierung nichtisothermer Mehrphasenprozesse - in NAPL-kontaminierten por\"{o}sen Medien.}}, - school = {University of Stuttgart}, - year = {2001} +@INBOOK{A3:sfb404:2003, + chapter = {A3}, + pages = {69--98}, + title = {{Arbeits- und Ergebnisbericht 2003}}, + publisher = {SFB 404}, + year = {2003}, + author = {Helmig, R. and Class, H. and Jakobs, H. and Bierlinski, A. and \"Olmann, + U.}, + month = {May} } -@ARTICLE{A3:class:2002b, - author = {Class, H. and Helmig, R.}, - title = {{Numerical Simulation of Nonisothermal Multiphase Multicomponent Processes - in Porous Media -- 2. Applications for the Injection of Steam and - Air}}, - journal = {Advances in Water Resources}, - year = {2002}, - volume = {25}, - pages = {551--564} +@PHDTHESIS{A3:oelmann:2006a, + author = {\"Olmann, Ulrich}, + title = {{Behandlung anisotroper Mobilit\"aten als Resultat von Upscalingverfahren + mittels Mehrpunktflu{\ss}approximationen}}, + school = {Institut f\"ur Wasserbau, Universit\"at Stuttgart}, + year = {to be published 2006} } -@ARTICLE{A3:class:2002a, - author = {Class, H. and Helmig, R. and Bastian, P.}, - title = {{Numerical Simulation of Nonisothermal Multiphase Multicomponent Processes - in Porous Media -- 1. An Efficient Solution Technique}}, - journal = {Advances in Water Resources}, - year = {2002}, - volume = {25}, - pages = {533--550} -} -@ARTICLE{A3:coats:1974, - author = {Coats, K. H. and Chieh Chu, W. D. G. and Marcum, B. E.}, - title = {{Three-dimensional simulation of steamflooding}}, - journal = {Society of Petroleum Engineers Journal}, - year = {1974}, - month = {December} +@MISC{A3:oelmann:2006b, + author = {\"Olmann, U. and Aavatsmark, I. and Helmig, R.}, + title = {{Buckley-Leverett heterogen --- Konstruktion der L\"osung mit der + Charakteristikenmethode}}, + howpublished = {Preprint-Reihe des SFB404}, + month = {March}, + year = {2006}, + note = {2006/05} } -@phdthesis{darcis2013, - author = {Melanie Yvonne Darcis}, - title = {Coupling models of different complexity for the simulation of CO2 storage in deep saline aquifers}, - school = {Universit\"at Stuttgart}, - year = {2013}, - address = {Holzgartenstr. 16, 70174 Stuttgart}, - language = {eng}, - URL = {http://elib.uni-stuttgart.de/opus/volltexte/2013/8141}, - ISBN = {978-3-942036-22-1}, +@ARTICLE{LAND1968, + author = {C. S. Land}, + title = {{Calculation of Imbibition Relative Permeability for Two- and Three-Phase + Flow from Rock Properties}}, + journal = {Journal of the Society of Petroleum Engineers}, + year = {1968}, + volume = {8}, + pages = {149--156}, + number = {2} } -@MISC{DARCY1856, - author = {H. Darcy}, - title = {L{es Fontaines publiques de la ville de Dijon}}, - howpublished = {Paris}, - year = {1856}, - key = {Dar1856} -} -% no doi or link available -@book{daubert1989, - title={{Physical and Thermodynamic Properties of Pure Chemicals: Design institute for physical property data, American institute of chemical engineers. vp}}, - author={Daubert, T. E. and Danner, R. P.}, - year={1989}, - publisher={Hemisphere Publishing Corporation} +@article{spycher2005, + title={{CO 2-H 2 O mixtures in the geological sequestration of CO 2. II. Partitioning in chloride brines at 12--100 C and up to 600 bar}}, + author={Spycher, N. and Pruess, K.}, + journal={Geochimica et Cosmochimica Acta}, + volume={69}, + number={13}, + pages={3309--3320}, + year={2005}, + publisher={Elsevier}, + url={https://dx.doi.org/10.1016/j.gca.2005.01.015} } -@ARTICLE{A3:deneef:1997, - author = {De Neef, M. and Molenaar, J.}, - title = {{Analysis of DNAPL infiltration in a Medium with a low-permeable lens}}, - journal = {Computational Geosciences}, - year = {1997}, - volume = {1}, - pages = {191-214} +@Article{spycher2003, + author = {Spycher, N. and Pruess, K. and Ennis-King, J.}, + title = {{CO_2-H_2O mixtures in the geological sequestration of CO_2. I. Assessment and calculation of mutual solubilities from 12 to 100 C and up to 600 bar}}, + journal = {Geochimica et cosmochimica acta}, + year = {2003}, + volume = {67}, + number = {16}, + pages = {3015--3031}, + publisher = {Elsevier}, + url = {https://dx.doi.org/10.1016/S0016-7037(03)00273-4} } @article{delshad1989, @@ -475,61 +348,74 @@ url={https://dx.doi.org/10.1007/BF00134742} } +@misc{sander1999, + title={{Compilation of Henry's law constants for inorganic and organic species of potential importance in environmental chemistry}}, + author={Sander, R.}, + year={1999}, + publisher={Max-Planck Institute of Chemistry, Air Chemistry Department Mainz, Germany}, + url={http://enviromap.utah.gov/businesses/E/EnSolutions/depleteduranium/performassess/compliancereport/docs/2014/07Jul/supinfo/appreferences/Sander1999.pdf} +} -@ARTICLE{DITTERICH1996, - author = {E. Ditterich}, - title = {{Wirbel um den Bodenschutz}}, - journal = {Umweltmagazin}, - year = {1996}, - pages = {46--48}, - number = {4} +@PHDTHESIS{HUBER2000, + author = {R. U. Huber}, + title = {{Compositional Multiphase Flow and Transport in Heterogeneous Porous + Media}}, + school = {University of Stuttgart}, + year = {2000} } -@article{duan2003, - title={{An improved model calculating CO 2 solubility in pure water and aqueous NaCl solutions from 273 to 533 K and from 0 to 2000 bar}}, - author={Duan, Z. and Sun, R.}, - journal={Chemical geology}, - volume={193}, - number={3}, - pages={257--271}, - year={2003}, - publisher={Elsevier}, - url={https://dx.doi.org/10.1016/S0009-2541(02)00263-2} -} -@phdthesis{ebigbo2005, - title={{Thermal effects of carbon dioxide sequestration in the subsurface}}, - author={Ebigbo, A.}, - year={2005}, - school={Master’s thesis, Institut f{\"u}r Wasserbau, Universit{\"a}t Stuttgart}, - url={https://www.hydrosys.uni-stuttgart.de/institut/hydrosys/publikationen/paper/Dipl_Anozie_Ebigbo.pdf} +@BOOK{ANDERSON-CFD-95, + title = {{Computational Fluid Mechanics}}, + publisher = {McGraw-Hill}, + year = {1995}, + author = {J. D. Anderson}, + edition = {1}, + subtitle = {The Basics with Applications} } +@article{nield2006, + title={{Convection with Change of Phase}}, + author={Nield, D. A. and Bejan, A.}, + journal={Convection in Porous Media}, + pages={403--452}, + year={2006}, + publisher={Springer}, + url={https://dx.doi.org/10.1007/0-387-33431-9_10} +} -@INPROCEEDINGS{A3:edwards:1994, - author = {Edwards, M. G. and Rogers, C. F.}, - title = {{A flux continuous scheme for the full tensor pressure equation}}, - booktitle = {Proc.\ of the 4th European Conf.\ on the Mathematics of Oil Recovery}, - year = {1994}, - address = {Norway} +@BOOK{kays2005, + title = {{Convective heat and mass transfer}}, + publisher = {McGraw-Hill Higher Education}, + year = {2005}, + isbn={9780071238298}, + author = {W. M. Kays and M. E. Crawford and B. Weigand}, + edition = {4}, } -@PHDTHESIS{A3:emmert:1997, - author = {Emmert, M.}, - title = {{Numerische Simulation von isothermen/nichtisothermen Mehrphasenprozessen - unter Ber\"ucksichtigung der Ver\"anderung der Fluideigenschaften}}, - school = {Institut f\"ur Wasserbau, Universit\"at Stuttgart}, - year = {1997} +@PhdThesis{darcis2013, + author = {Melanie Yvonne Darcis}, + title = {{Coupling models of different complexity for the simulation of CO2 storage in deep saline aquifers}}, + school = {Universit\"at Stuttgart}, + year = {2013}, + address = {Holzgartenstr. 16, 70174 Stuttgart}, + isbn = {978-3-942036-22-1}, + language = {eng}, + url = {http://elib.uni-stuttgart.de/opus/volltexte/2013/8141} } -@ARTICLE{A3:falta:1992, - author = {Falta, R. W. and Pruess, K. and Javandel, I. and Witherspoon, P. A.}, - title = {{Numerical Modeling of Steam Injection for the Removal of Nonaqueous - Phase Liquids From the Subsurface. 1. Numerical Formulation}}, - journal = {Water Resoures Research}, - year = {1992}, - volume = {28,2}, - pages = {433--449} +@ARTICLE{A3:Braun:2002, + author = {Braun, C. and Helmig, R. and Manthey, S.}, + title = {{Determination of constitutive relationships for two-phase flow processes + in heterogeneous porous media with emphasis on the relative permeability-saturation-relationship}}, + journal = {Journal of Contaminant Hydrology}, + year = {2005} +} +@phdthesis{nuske2009, + title={{Determination of interfacial area-capillary pressure-saturation relationships for a single fracture}}, + author={Nuske, K. P.}, + year={2009}, + school={Master’s thesis, Universit{\"a}t Stuttgart} } @article{ferrell1967, @@ -544,153 +430,369 @@ url={https://dx.doi.org/10.1021/je60032a036} } -@book{finsterle1993, - title={{Inverse Modellierung zur Bestimmung hydrogeologischer Parameter eines Zweiphasensystems}}, - author={Finsterle, Stefan}, - year={1993}, - publisher={VAW}, - url={http://tocs.ulb.tu-darmstadt.de/26322307.pdf} +@article{xu2003, + title={{Diffusion of water in liquid and supercritical carbon dioxide: an NMR study}}, + author={Xu, B. and Nagashima, K. and DeSimone, J. M. and Johnson, C. S.}, + journal={The Journal of Physical Chemistry A}, + volume={107}, + number={1}, + pages={1--3}, + year={2003}, + publisher={ACS Publications}, + url={https://dx.doi.org/10.1021/jp021943g} } +@INPROCEEDINGS{A3:aavatsmark:1994, + author = {Aavatsmark, I. and Barkve, T. and B{\o}e, {\O}. and Mannseth, T.}, + title = {{Discretization on non-orthogonal, curvilinear grids for multiphase + flow}}, + booktitle = {Proc.\ of the 4th European Conf.\ on the Mathematics of Oil Recovery}, + year = {1994}, + address = {Norway} +} -@TECHREPORT{A3:forsyth:1993, - author = {Forsyth, P. A.}, - title = {{Three dimensional modeling of steam flush for DNAPL site remediation}}, - institution = {Dep. of Computer Science}, - year = {1993}, - address = {University of Waterloo}, - note = {CS-93-56} +@ARTICLE{A3:aavatsmark:1996, + author = {Aavatsmark, I. and Barkve, T. and B{\o}e, {\O}. and Mannseth, T.}, + title = {{Discretization on Non-Orthogonal, Quadrilateral Grids for Inhomogeneous + Anisotropic Media}}, + journal = {Journal of Computational Physics}, + year = {1996}, + volume = {127}, + pages = {2--14} } -@PHDTHESIS{Fritz2010, - author = {J. Fritz}, - title = {{A Decoupled Model for Compositional Non-Isothermal Multiphase Flow - in Porous Media and Multiphysics Approaches for Two-Phase Flow}}, - school = {Universit\"at Stuttgart}, - year = {2010}, - owner = {rodrigog}, - timestamp = {2011.02.07} +@Book{BEAR1972, + title = {{Dynamics of Fluids in Porous Media}}, + publisher = {Dover}, + year = {1972}, + author = {Bear, Jacob}, + series = {Dover Civil and Mechanical Engineering Series}, + isbn = {9780486656755} } -@ARTICLE{A3:gimse:1992, - author = {Gimse, T. and Risebro, N. H.}, - title = {{Solution of the Cauchy Problem for a Conservation Law with a Discontinuous - Flux Function}}, - journal = {SIAM J.\ Math.\ Anal.}, - year = {1992}, +@ARTICLE{A3:bastian:1999, + author = {Bastian, P. and Helmig, R.}, + title = {{Efficient Fully-Coupled Solution Techniques for Two Phase Flow in + Porous Media. Parallel Multigrid Solution and Large Scale Computations}}, + journal = {Advances in Water Resources}, + year = {1999} +} + +@ARTICLE{BASTIAN-HELMIG1999, + author = {P. Bastian and R. Helmig}, + title = {{Efficient Fully-Coupled Solution Techniques for Two Phase Flow in + Porous Media. Parallel Multigrid Solution and Large Scale Computations}}, + journal = {Advances in Water Resources}, + year = {1999}, volume = {23}, - pages = {635-648}, + pages = {199--216}, number = {3} } -@INPROCEEDINGS{A3:gimse:1991, - author = {Gimse, T. and Risebro, N. H.}, - title = {{Riemann Problems with a Discontinuous Flux Function}}, - booktitle = {Proc.\ 3rd Internat.\ Conf.\ Hyperbolic Problems}, - year = {1991}, - pages = {488-502}, - address = {Uppsala} +@article{adams2002, + title={{Equations of state for basin geofluids: algorithm review and intercomparison for brines}}, + author={Adams, J. J. and Bachu, S.}, + journal={Geofluids}, + volume={2}, + number={4}, + pages={257--271}, + year={2002}, + publisher={Wiley Online Library}, + url = {https://dx.doi.org/10.1046/j.1468-8123.2002.00041.x} } -@TECHREPORT{subgrid, - author = {C. Gr\"aser and O. Sander}, - title = {{The dune-subgrid Module and Some Applications}}, - year = {2009}, - note = {Matheon 566} +@article{oliveira2003, + title={{Estimation of primary drainage three-phase relative permeability for organic liquid transport in the vadose zone}}, + author={Oliveira, L. I. and Demond, A. H.}, + journal={Journal of Contaminant Hydrology}, + volume={66}, + number={3}, + pages={261--285}, + year={2003}, + publisher={Elsevier}, + url={https://dx.doi.org/10.1016/S0169-7722(03)00029-9} } -@MASTERSTHESIS{A3:grass:2005, - author = {Grass, C.}, - title = {{Untersuchung von Randbedingungen bei der numerischen Simulation von - Zweiphasenstr\"omungen in por\"osen Medien}}, - school = {Institut f\"ur Wasserbau, Universit\"at Stuttgart}, +@ARTICLE{SPAETH1969, + author = {H. Sp{\"{a}}th}, + title = {{Exponential Spline Interpolation}}, + journal = {Computing}, + year = {1969}, + volume = {4}, + pages = {225--233}, + number = {3}, + key = {Spa69} +} + +@BOOK{PRANDTL2002, + title = {{F\"{u}hrer durch die Str\"{o}mungslehre}}, + publisher = {Vieweg}, + year = {2002}, + author = {L. Prandtl and H. Oertel}, + edition = {11} +} + +@ARTICLE{SPE5, + author = {J. E. Killough and C. A. Kossack}, + title = {{Fifth Comparative Solution Project: Evaluation of Miscible Flood Simulators}}, + journal = {Society of Petroleum Engineers}, + year = {1987}, + volume = {SPE 16000} +} + +@ARTICLE{WHITAKER1985, + author = {S. Whitaker}, + title = {{Flow in porous media I: A theoretical derivation of Darcy's law}}, + journal = {Transport in Porous Media}, + year = {1985}, + volume = {1}, + pages = {3--25}, + number = {1} +} + +@Article{CARMAN1937, + author = {Carman, Philip C.}, + title = {{Fluid flow through granular beds}}, + journal = {Transactions, Institution of Chemical Engineers}, + year = {1937}, + volume = {15}, + pages = {150--166}, + note = {reprinted in \emph{Chemical Engineering Research and Design}, 75:S32--S48, 1997}, + doi = {10.1016/S0263-8762(97)80003-2} +} + + +@inproceedings{adebiyi2003, + title={{Formulations for the thermodynamic properties of pure substances}}, + author={Adebiyi, G. A.}, + booktitle={ASME 2003 International Mechanical Engineering Congress and Exposition}, + pages={183--188}, + year={2003}, + organization={American Society of Mechanical Engineers}, + url = {https://dx.doi.org/10.1115/IMECE2003-41299} +} + +@PhdThesis{Tatomir2012a, + author = {Tatomir, Alexandru-Bogdan}, + title = {{From discrete to continuum concepts of flow in fractured porous media}}, + school = {Universität Stuttgart}, + year = {2012}, + comment = {10.18419/opus-476}, + timestamp = {2017.02.27}, + url = {http://dx.doi.org/10.18419/opus-476} +} + +@Article{GEUZAINE2009, + author = {Geuzaine, C. and Remacle, J. - F.}, + title = {{Gmsh: A 3-{D} finite element mesh generator with built-in pre-and post-processing facilities}}, + journal = {International Journal for Numerical Methods in Engineering}, + year = {2009}, + volume = {79}, + number = {11}, + pages = {1309--1331}, + doi = {10.1002/nme.2579}, + publisher = {Wiley Online Library}, + url = {http://dx.doi.org/10.1002/nme.2579} +} + +@BOOK{HYDROSKRIPT, + title = {{Grundlagen der Hydromechanik}}, + publisher = {Shaker}, year = {2005}, - month = {January} + author = {R. Helmig and H. Class}, + edition = {1} } -@BOOK{GRIEBEL2003, - title = {{Numerische Simulation in der Molek\"{u}ldynamik}}, +@MISC{GSIMSKRIPT, + author = {P. Bastian}, + title = {{Grundlagen der Modellbildung und Simulation}}, + howpublished = {University of Stuttgart, Lecture Notes}, + year = {2007} +} + +@Article{Pebesma1998a, + author = {Edzer J. Pebesma and Cees G. Wesseling}, + title = {{Gstat: a program for geostatistical modelling, prediction and simulation}}, + journal = {Computers \& Geosciences}, + year = {1998}, + volume = {24}, + pages = {17--31}, + number = {1}, + doi = {http://dx.doi.org/10.1016/S0098-3004(97)00082-4}, + issn = {0098-3004}, + url = {http://dx.doi.org/10.1016/S0098-3004(97)00082-4} +} + +@article{watanabe2004, + title={{Guideline on the Henry's Constant and Vapor-Liquid Distribution Constant for Gases in H2O and D2O at High Temperatures}}, + author={Watanabe, K. and Dooley, R. B.}, + journal={International Association for the Properties of Water and Steam}, + year={2004}, + url={http://www.iapws.org/relguide/HenGuide.pdf} +} + +@BOOK{MEYBERG2000, + title = {{H\"{o}here Mathematik 1}}, publisher = {Springer}, - year = {2003}, - author = {M. Griebel and S. Knapek and G. Zumbusch and A. Caglar}, + year = {2001}, + author = {K. Meyberg and P. Vachenauer}, + edition = {6} +} + +@article{lyman1990, + title={{Handbook of chemical property estimation methods: environmental behavior of organic compounds}}, + author={Lyman, W. J. and Reehl, W. F. and Rosenblatt, D. H.}, + year={1990}, + publisher={Washington, DC (United States); American Chemical Society}, + url={https://www.osti.gov/scitech/biblio/6902382} +} + +@ARTICLE{HASSANIZADEH1987, + author = {S. M. Hassanizadeh and W. G. Gray}, + title = {{High velocity flow in porous media}}, + journal = {Transport in Porous Media}, + year = {1987} +} + +@TECHREPORT{BROOKS1964, + author = {R. H. Brooks and A. T. Corey.}, + title = {{Hydraulic properties of porous media}}, + institution = {Colorado State University, Fort Collins}, + year = {1964}, + note = {Hydrology Paper No. 3, 27 pp.} +} + +@ARTICLE{A3:nordbotten:2005a, + author = {Nordbotten, J. M. and Celia, M. A. and Bachu, S.}, + title = {{Injection and Storage of {CO$_2$} in Deep Saline Aquifers: Analytical + Solution for {CO$_2$} Plume Evolution During Injection}}, + journal = {Transport in Porous Media}, + year = {2005}, + volume = {58(3)}, + pages = {339--360} +} + +@article{joekar2008, + title={{Insights into the relationships among capillary pressure, saturation, interfacial area and relative permeability using pore-network modeling}}, + author={Joekar-Niasar, V. and Hassanizadeh, S. M. and Leijnse, A.}, + journal={Transport in Porous Media}, + volume={74}, + number={2}, + pages={201--219}, + year={2008}, + publisher={Springer}, + url={https://dx.doi.org/10.1007/s11242-007-9191-7} +} + +@ARTICLE{NIESSNER2005, + author = {J. Niessner and R. Helmig and H. Jakobs and J. Roberts}, + title = {{Interface Condition and Exact Linearization in the Newton Iterations + for Two-phase Flow in Heterogeneous Porous Media}}, + journal = {Advances in Water Resources}, + year = {2005}, + volume = {28}, + pages = {671--687}, + number = {7} +} + +@BOOK{A3:Stauffer:1984, + title = {{Introduction to Percolation Theory}}, + publisher = {Taylor \& Francis}, + year = {1994}, + author = {Stauffer, F. and Aharnony, A.} +} + +@book{finsterle1993, + title={{Inverse Modellierung zur Bestimmung hydrogeologischer Parameter eines Zweiphasensystems}}, + author={Finsterle, Stefan}, + year={1993}, + publisher={VAW}, + url={http://tocs.ulb.tu-darmstadt.de/26322307.pdf} +} + + +@BOOK{ORTEGA2000, + title = {{Iterative Solution of Nonlinear Equations in Several Variables}}, + publisher = {Society for Industrial and Applied Mathematics}, + year = {2000}, + author = {J. M. Ortega and W. C. Rheinboldt}, + address = {Philadelphia, PA, USA}, edition = {1} } -@article{gudbjerg2004, -title = {{On spurious water flow during numerical simulation of steam injection into water-saturated soil}}, -author = {{J. Gudbjerg and O. Trötschler and A. Färber and T.O. Sonnenborg and K.H. Jensen}}, -journal = {{Journal of Contaminant Hydrology}}, -volume = {75}, -number = {3–4}, -pages = {297 - 318}, -year = {2004}, -doi = {http://dx.doi.org/10.1016/j.jconhyd.2004.07.003}, -url = {http://www.sciencedirect.com/science/article/pii/S0169772204001160} +@BOOK{GLADROW2000, + title = {{Lattice-Gas Cellular Automata and Lattice Boltzmann Models: An Introduction}}, + publisher = {Springer}, + year = {2000}, + author = {D. A. Wolf-Gladrow}, + edition = {1} } -@INPROCEEDINGS{A3:freiboth:2004, - author = {S. H\"olzemann and H. Class and R. Helmig}, - title = {{A New Concept for the Numerical Simulation and Parameter Identification - of Multiphase Flow and Transport Processes in Cohesive Soils}}, - booktitle = {{Unsaturated Soils: Numerical and Theoretical Approaches -- Proceedings - of the International Conference ``From Experimental Evidence towards - Numerical Modelling of Unsaturated Soils'' (18. - 19. September 2003, - Bauhaus-Universit\"at Weimar)}}, - year = {2004}, - editor = {Schanz, T.}, - publisher = {Springer-Verlag}, - note = {ISBN: 3-540-21122-5} +@Misc{DARCY1856, + author = {H. Darcy}, + title = {{Les Fontaines publiques de la ville de Dijon}}, + howpublished = {Paris}, + year = {1856}, + key = {Dar1856} } -@ARTICLE{HASSANIZADEH1987, - author = {S. M. Hassanizadeh and W. G. Gray}, - title = {{High velocity flow in porous media}}, - journal = {Transport in Porous Media}, - year = {1987} +@BOOK{ARFKEN2005, + title = {{Mathematical Methods for Physicists}}, + publisher = {Academic Press}, + year = {2005}, + author = {G. B. Arfken and H. J. Weber}, + edition = {6} } -@BOOK{A3:helmig:1997, - title = {{Multiphase Flow and Transport Processes in the Subsurface --- A Contribution - to the Modeling of Hydrosystems}}, - publisher = {Springer Verlag}, - year = {1997}, - author = {Helmig, R.} +@BOOK{SAENDIG-05, + title = {{Mathematische Methoden in der Kontinuumsmechanik}}, + publisher = {Institut f\"{u}r Angewandte Analysis und Numerische Simulation}, + year = {2005}, + author = {A. - M. S{\"{a}}ndig}, + edition = {1}, + key = {Sae05} } -@BOOK{HELMIG1997, - title = {{Multiphase Flow and Transport Processes in the Subsurface: A Contribution - to the Modeling of Hydrosystems}}, +@BOOK{KARNIADAKIS2005, + title = {{Microflows and Nanoflows: Fundamentals and Simulation}}, publisher = {Springer}, - year = {1997}, - author = {R. Helmig}, + year = {2005}, + author = {G. Karniadakis and A. Be{\c c}k\"{o}k and N. R. Aluru}, edition = {1} } -@article{hollis1996, - title={{Real-Gas Flow Properties for NASA Langley Research Center Aerothermodynamic Facilities Complex Wind Tunnels}}, - author={Hollis, B. R.}, - year={1996}, - publisher={NASA Langley Technical Report Server}, - url = {{http://dl.acm.org/citation.cfm?id=886001}} +@PHDTHESIS{DeNEFF2000, + author = {de Neef, M. J.}, + title = {{Modeling Capillary Effects in Heterogeneous Porous Media}}, + school = {Technical University Delft}, + year = {2000} } -@BOOK{HYDROSKRIPT, - title = {{Grundlagen der Hydromechanik}}, - publisher = {Shaker}, - year = {2005}, - author = {R. Helmig and H. Class}, +@ARTICLE{A3:acosta:2006, + author = {Acosta, M. and Merten, C. and Eigenberger, G. and Class, H. and Helmig, + R. and Thoben, B. and M\"uller-Steinhagen, H.}, + title = {{Modeling non-isothermal two-phase multicomponent flow in the cathode + of PEM fuel cells}}, + journal = {Journal of Power Sources}, + year = {2006}, + pages = {in print}, + url={https://dx.doi.org/10.1016/j.jpowsour.2005.12.068} +} + +@BOOK{CLASS2007, + title = {{Models for Non-Isothermal Compositional Gas-Liquid Flow and Transport + in Porous Media}}, + publisher = {University of Stuttgart}, + year = {2007}, + author = {H. Class}, edition = {1} } -@INBOOK{A3:sfb404:2003, - chapter = {A3}, - pages = {69--98}, - title = {{Arbeits- und Ergebnisbericht 2003}}, - publisher = {SFB 404}, - year = {2003}, - author = {Helmig, R. and Class, H. and Jakobs, H. and Bierlinski, A. and \"Olmann, - U.}, - month = {May} +@UNPUBLISHED{A3:nordbotten:2005c, + author = {Nordbotten, J. M. and Aavatsmark, I. and Eigestad, G. T.}, + title = {{Monotonicity of Control Volume Methods}}, + note = {submitted to Numerische Mathematik}, + year = {2005} } @INPROCEEDINGS{A3:HelmigEtAl:2006, @@ -708,33 +810,21 @@ url = {http://www.sciencedirect.com/science/article/pii/S0169772204001160} type = {Plenary lecture} } -@PHDTHESIS{HUBER2000, - author = {R. U. Huber}, - title = {{Compositional Multiphase Flow and Transport in Heterogeneous Porous - Media}}, - school = {University of Stuttgart}, - year = {2000} -} - -@article{joekar2008, - title={{Insights into the relationships among capillary pressure, saturation, interfacial area and relative permeability using pore-network modeling}}, - author={Joekar-Niasar, V. and Hassanizadeh, S. M. and Leijnse, A.}, - journal={Transport in Porous Media}, - volume={74}, - number={2}, - pages={201--219}, - year={2008}, - publisher={Springer}, - url={https://dx.doi.org/10.1007/s11242-007-9191-7} +@BOOK{A3:helmig:1997, + title = {{Multiphase Flow and Transport Processes in the Subsurface --- A Contribution + to the Modeling of Hydrosystems}}, + publisher = {Springer Verlag}, + year = {1997}, + author = {Helmig, R.} } - -@techreport{johansen1977, - title={{Thermal conductivity of soils}}, - author={Johansen, O.}, - year={1977}, - institution={DTIC Document}, - url={http://oai.dtic.mil/oai/oai?verb=getRecord&metadataPrefix=html&identifier=ADA044002} +@BOOK{HELMIG1997, + title = {{Multiphase Flow and Transport Processes in the Subsurface: A Contribution + to the Modeling of Hydrosystems}}, + publisher = {Springer}, + year = {1997}, + author = {R. Helmig}, + edition = {1} } @@ -748,140 +838,105 @@ url = {http://www.sciencedirect.com/science/article/pii/S0169772204001160} number = {1} } -@BOOK{KARNIADAKIS2005, - title = {{Microflows and Nanoflows: Fundamentals and Simulation}}, - publisher = {Springer}, - year = {2005}, - author = {G. Karniadakis and A. Be{\c c}k\"{o}k and N. R. Aluru}, - edition = {1} -} - -@BOOK{kays2005, - title = {{Convective heat and mass transfer}}, - publisher = {McGraw-Hill Higher Education}, - year = {2005}, - isbn={9780071238298}, - author = {W. M. Kays and M. E. Crawford and B. Weigand}, - edition = {4}, -} - -@ARTICLE{A3:King:1996, - author = {King, P. R.}, - title = {{Upscaling Permeability: Error Analysis for Renormalisation}}, - journal = {Transport in Porous Media}, - year = {1996}, - volume = {23}, - pages = {337--354} +@InBook{wolff2013b, + pages = {39--80}, + title = {{Multi-point flux approximation L-method in 3D: numerical convergence and application to two-phase flow through porous media}}, + publisher = {De Gruyter}, + year = {2013}, + author = {Wolff, Markus and Cao, Yufei and Flemisch, Bernd and Helmig, Rainer and Wohlmuth, Barbara}, + editor = {P. Bastian, J. Kraus, R. Scheichl, and M. Wheeler}, + series = {Simulation of Flow in Porous Media: Applications in Energy and Environment} } -@ARTICLE{KOOL1987, - author = {J. Kool and J. C. Parker and M. T. van Genuchten}, - title = {{Parameter Estimation for Unsaturated Flow and Transport Models - - A Review}}, - journal = {Journal of Hydrology}, - year = {1987}, - volume = {91}, - pages = {255--293} +@PhdThesis{wolff2013a, + author = {Markus Wolff}, + title = {{Multi-scale modeling of two-phase flow in porous media including capillary pressure effects}}, + school = {Institut f\"ur Wasser- und Umweltsystemmodellierung, Universit\"at Stuttgart}, + year = {2013}, + url = {http://elib.uni-stuttgart.de/opus/volltexte/2013/8661/} } -@Article{Kunz2016, -author={{Kunz, P. -and Zarikos, I. M. -and Karadimitriou, N. K. -and Huber, M. -and Nieken, U. -and Hassanizadeh, S. M.}}, -title={{Study of Multi-phase Flow in Porous Media: Comparison of SPH Simulations with Micro-model Experiments}}, -journal={{Transport in Porous Media}}, -year={2016}, -volume={114}, -number={2}, -pages={581--600}, -doi={10.1007/s11242-015-0599-1}, -url={http://dx.doi.org/10.1007/s11242-015-0599-1} +@BOOK{BASTIAN1999, + title = {{Numerical Computation of Multiphase Flows in Porous Media}}, + publisher = {Habilitationsschrift, University of Kiel}, + year = {1999}, + author = {P. Bastian}, + edition = {1} } -@BOOK{A3:lancaster:1969, - title = {{Theory of Matrices}}, - publisher = {Academic Press, Inc.\ (London) Ltd.}, - year = {1969}, - author = {Lancaster, Peter} +@PHDTHESIS{PAPAFOTIOU2008, + author = {A. Papafotiou}, + title = {{Numerical investigations of the role of hysteresis in heterogeneous + two-phase flow systems}}, + school = {University of Stuttgart}, + year = {2008} } -@ARTICLE{LAND1968, - author = {C. S. Land}, - title = {{Calculation of Imbibition Relative Permeability for Two- and Three-Phase - Flow from Rock Properties}}, - journal = {Journal of the Society of Petroleum Engineers}, - year = {1968}, - volume = {8}, - pages = {149--156}, - number = {2} -} -@article{lashanizadegan2008, - title={Simultaneous heat and fluid flow in porous media: case study: steam injection for tertiary oil recovery}, - author={Lashanizadegan, A and Ayatollahi, Sh and Homayoni, M}, - journal={Chemical Engineering Communications}, - volume={195}, - number={5}, - pages={521--535}, - year={2008}, - url={http://www.tandfonline.com/doi/abs/10.1080/00986440701709699}, - publisher={Taylor \& Francis} +@BOOK{A3:leveque:1998, + title = {{Numerical Methods for Conservation Laws}}, + publisher = {Birkh\"auser Verlag, Basel Boston, Berlin}, + year = {1998}, + author = {LeVeque, R. J.} } - -@ARTICLE{LENHARD1987, - author = {R. J. Lenhard and J. C. Parker}, - title = {{A Model for Hysteretic Constitutive Relations Governing Multiphase - Flow. 2. Permeability-Saturation Relations}}, - journal = {Water Resources Research}, - year = {1987}, - volume = {23}, - pages = {2197--2206}, - number = {12} +@BOOK{LEVEQUE1992, + title = {{Numerical Methods for Conservation Laws}}, + publisher = {Birkh\"{a}user}, + year = {1992}, + author = {R. J. LeVeque}, + edition = {2} } -@ARTICLE{LHHW2011, - author = {A. Lauser and C. Hager and R. Helmig and B. Wohlmuth}, - title = {{A new approach for phase transitions in miscible multi-phase flow in porous media}}, - journal = {Advances in Water Resources}, - year = {2011}, - pages = {957--966}, - volume = {34}, - number = {8} +@ARTICLE{A3:falta:1992, + author = {Falta, R. W. and Pruess, K. and Javandel, I. and Witherspoon, P. A.}, + title = {{Numerical Modeling of Steam Injection for the Removal of Nonaqueous + Phase Liquids From the Subsurface. 1. Numerical Formulation}}, + journal = {Water Resoures Research}, + year = {1992}, + volume = {28,2}, + pages = {433--449} } - -@BOOK{A3:leveque:1998, - title = {{Numerical Methods for Conservation Laws}}, - publisher = {Birkh\"auser Verlag, Basel Boston, Berlin}, - year = {1998}, - author = {LeVeque, R. J.} +@PhdThesis{A3:bielinski:2006, + author = {Bielinski, A.}, + title = {{Numerical Simulation of CO$_2$ Sequestration in Geological Formations}}, + school = {Institut f\"ur Wasserbau, Universit\"at Stuttgart}, + year = {2006}, + doi = {http://dx.doi.org/10.18419/opus-252}, + url = {http://dx.doi.org/10.18419/opus-252} } -@BOOK{LEVEQUE1992, - title = {{Numerical Methods for Conservation Laws}}, - publisher = {Birkh\"{a}user}, - year = {1992}, - author = {R. J. LeVeque}, - edition = {2} +@INBOOK{A3:bastian:2000, + pages = {52--71}, + title = {{Numerical Simulation of Multiphase Flow in Fractured Porous Media.}}, + publisher = {Springer Verlag}, + year = {2000}, + author = {Bastian, P. and Chen, Z. and Ewing, R. E. and Helmig, R. and Jakobs + H. and Reichenberger V.}, + series = {Lecture Notes in Physics, Chen, Ewing and Shi (eds.)} } -@BOOK{A3:looney:2000, - title = {{Vadose Zone}}, - publisher = {Batelle Press, Columbus OH}, - year = {2000}, - author = {Looney, B. B. and Falta, R. W.} +@Article{A3:class:2002a, + author = {Class, H. and Helmig, R. and Bastian, P.}, + title = {{Numerical Simulation of Nonisothermal Multiphase Multicomponent Processes in Porous Media -- 1. An Efficient Solution Technique}}, + journal = {Advances in Water Resources}, + year = {2002}, + volume = {25}, + pages = {533--550}, + doi = {10.1016/S0309-1708(02)00014-3}, + url = {http://dx.doi.org/10.1016/S0309-1708(02)00014-3} } -@article{lyman1990, - title={{Handbook of chemical property estimation methods: environmental behavior of organic compounds}}, - author={Lyman, W. J. and Reehl, W. F. and Rosenblatt, D. H.}, - year={1990}, - publisher={Washington, DC (United States); American Chemical Society}, - url={https://www.osti.gov/scitech/biblio/6902382} +@ARTICLE{A3:class:2002b, + author = {Class, H. and Helmig, R.}, + title = {{Numerical Simulation of Nonisothermal Multiphase Multicomponent Processes + in Porous Media -- 2. Applications for the Injection of Steam and + Air}}, + journal = {Advances in Water Resources}, + year = {2002}, + volume = {25}, + pages = {551--564} } @BOOK{MEISTER2008, @@ -893,102 +948,157 @@ url={http://dx.doi.org/10.1007/s11242-015-0599-1} edition = {3} } -@BOOK{MEYBERG2000, - title = {{H\"{o}here Mathematik 1}}, +@MISC{NUMPDESKRIPT, + author = {P. Bastian}, + title = {{Numerische L\"{o}sung partieller Differentialgleichungen}}, + howpublished = {University of Stutt\-gart, Lecture Notes}, + year = {2007} +} + +@Book{stoer2005, + title = {{Numerische Mathematik 1}}, publisher = {Springer}, - year = {2001}, - author = {K. Meyberg and P. Vachenauer}, - edition = {6} + year = {2005}, + author = {Stoer, Josef and Bulirsch, Roland}, + address = {Berlin}, + edition = {9} } -@article{michaelides1981, - title={{Thermodynamic properties of geothermal fluids}}, - author={Michaelides, E. E.}, - journal={Trans.-Geotherm. Resour. Counc.;(United States)}, - volume={5}, - number={CONF-811015-}, - year={1981}, - publisher={Univ. of Delaware, Newark}, - url={https://www.osti.gov/scitech/biblio/6760030} +@BOOK{GRIEBEL2003, + title = {{Numerische Simulation in der Molek\"{u}ldynamik}}, + publisher = {Springer}, + year = {2003}, + author = {M. Griebel and S. Knapek and G. Zumbusch and A. Caglar}, + edition = {1} +} + +@PHDTHESIS{A3:emmert:1997, + author = {Emmert, M.}, + title = {{Numerische Simulation von isothermen/nichtisothermen Mehrphasenprozessen + unter Ber\"ucksichtigung der Ver\"anderung der Fluideigenschaften}}, + school = {Institut f\"ur Wasserbau, Universit\"at Stuttgart}, + year = {1997} +} + +@article{gudbjerg2004, +title = {{On spurious water flow during numerical simulation of steam injection into water-saturated soil}}, +author = {{J. Gudbjerg and O. Trötschler and A. Färber and T.O. Sonnenborg and K.H. Jensen}}, +journal = {{Journal of Contaminant Hydrology}}, +volume = {75}, +number = {3–4}, +pages = {297 - 318}, +year = {2004}, +doi = {http://dx.doi.org/10.1016/j.jconhyd.2004.07.003}, +url = {http://www.sciencedirect.com/science/article/pii/S0169772204001160} +} + +@ARTICLE{KOOL1987, + author = {J. Kool and J. C. Parker and M. T. van Genuchten}, + title = {{Parameter Estimation for Unsaturated Flow and Transport Models - + A Review}}, + journal = {Journal of Hydrology}, + year = {1987}, + volume = {91}, + pages = {255--293} } @Article{MILLINGTON1961, -author ={Millington, R. J. and Quirk, J. P.}, -title ={Permeability of porous solids}, -journal ={Trans. Faraday Soc.}, -year ={1961}, -volume ={57}, -issue ={0}, -pages ={1200--1207}, -doi ={10.1039/TF9615701200} + author = {Millington, R. J. and Quirk, J. P.}, + title = {{Permeability of porous solids}}, + journal = {Trans. Faraday Soc.}, + year = {1961}, + volume = {57}, + pages = {1200--1207}, + doi = {10.1039/TF9615701200}, + issue = {0} } +@BOOK{A3:aziz:1979, + title = {{Petroleum Reservoir Simulation}}, + publisher = {Applied Science Publishers, London}, + year = {1979}, + author = {Aziz, K. and Settari, A.} +} +@book{daubert1989, + title={{Physical and Thermodynamic Properties of Pure Chemicals: Design institute for physical property data, American institute of chemical engineers. vp}}, + author={Daubert, T. E. and Danner, R. P.}, + year={1989}, + publisher={Hemisphere Publishing Corporation} +} -@ARTICLE{MUALEM1976, - author = {Y. Mualem}, - title = {{A new model for predicting the hydraulic conductivity of unsaturated - porous media}}, - journal = {Water Resources Research}, - year = {1976}, - volume = {12}, - pages = {513--522}, - number = {3} +@article{hollis1996, + title={{Real-Gas Flow Properties for NASA Langley Research Center Aerothermodynamic Facilities Complex Wind Tunnels}}, + author={Hollis, B. R.}, + year={1996}, + publisher={NASA Langley Technical Report Server}, + url = {{http://dl.acm.org/citation.cfm?id=886001}} } -@ARTICLE{MUCCINO1998, - author = {J. C. Muccino and W. G. G. Gray and L. A. Ferrand}, - title = {{Toward an Improved Understanding of Multiphase Flow in Porous Media}, - journal = {Reviews of Geophysics}}, - year = {1998}, - volume = {36}, - pages = {401--422}, - number = {3} +@ARTICLE{BURDINE1953, + author = {N. T. Burdine}, + title = {{Relative permeability calculations from pore size distribution data}}, + journal = {Transactions of the American Institute of Mining and Metallurgical + Engineers}, + year = {1953}, + volume = {198}, + pages = {71--78} +} +@misc{cooper2008, + title={{Release of the IAPWS formulation 2008 for the viscosity of ordinary water substance}}, + author={Cooper, J. R. and Dooley, R. B.}, + year={2008}, + publisher={The International Association of the Properties of Water and Steam, Berlin, Germany} } -@BOOK{MUSKAT1937, - title = {{The Flow of Homogeneous Fluids Through Porous Media}}, - publisher = {McGraw-Hill}, - year = {1937}, - author = {M. 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A. and Bejan, A.}, - journal={Convection in Porous Media}, - pages={403--452}, - year={2006}, - publisher={Springer}, - url={https://dx.doi.org/10.1007/0-387-33431-9_10} +@INPROCEEDINGS{A3:gimse:1991, + author = {Gimse, T. and Risebro, N. H.}, + title = {{Riemann Problems with a Discontinuous Flux Function}}, + booktitle = {Proc.\ 3rd Internat.\ Conf.\ Hyperbolic Problems}, + year = {1991}, + pages = {488-502}, + address = {Uppsala} } -@ARTICLE{NIESSNER2005, - author = {J. Niessner and R. Helmig and H. Jakobs and J. Roberts}, - title = {{Interface Condition and Exact Linearization in the Newton Iterations - for Two-phase Flow in Heterogeneous Porous Media}}, - journal = {Advances in Water Resources}, - year = {2005}, - volume = {28}, - pages = {671--687}, - number = {7} +@INPROCEEDINGS{A3:allan:1998, + author = {Allan, J. and Ewing, J. and Helmig, R. and Braun, J.}, + title = {{Scale effects in multiphase flow modeling}}, + booktitle = {1. 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K.}, + title = {{Simple Renormalisation Schemes for Calculating Effective Properties + of Heterogeneous Reservoirs}}, + journal = {1st European Conference on the Mathematics of Oil Recovery, Cambridge, + UK, July 1989}, + year = {1989} } - -@article{aavatsmark2010, - title={A new finite-volume approach to efficient discretization on challenging grids}, - author={Aavatsmark, I. and Eigestad, G. T. and Heimsund, B. and Mallison, B. and Nordbotten, J. and {\O}ian, E. and others}, - journal={SPE Journal}, - volume={15}, - number={03}, - pages={658--669}, - year={2010}, - publisher={Society of Petroleum Engineers} +@PHDTHESIS{SHETA1999, + author = {H. Sheta}, + title = {{Simulation von Mehrphasenvorg\"{a}engen in por\"{o}sen Medien unter + Einbeziehung von Hystereseeffekten}}, + school = {University of Stuttgart}, + year = {1999} } +@Article{lashanizadegan2008, + author = {Lashanizadegan, A and Ayatollahi, Sh and Homayoni, M}, + title = {{Simultaneous heat and fluid flow in porous media: case study: steam injection for tertiary oil recovery}}, + journal = {Chemical Engineering Communications}, + year = {2008}, + volume = {195}, + number = {5}, + pages = {521--535}, + publisher = {Taylor \& Francis}, + url = {http://www.tandfonline.com/doi/abs/10.1080/00986440701709699} +} -@book{stoer2005, - address = {Berlin}, - author = {Stoer, Josef and Bulirsch, Roland}, - publisher = {Springer}, - title = {Numerische Mathematik 1}, - edition={9}, - year = {2005} +@ARTICLE{A3:gimse:1992, + author = {Gimse, T. and Risebro, N. H.}, + title = {{Solution of the Cauchy Problem for a Conservation Law with a Discontinuous + Flux Function}}, + journal = {SIAM J.\ Math.\ Anal.}, + year = {1992}, + volume = {23}, + pages = {635-648}, + number = {3} } -%no doi or link available -@phdthesis{nuske2009, - title={{Determination of interfacial area-capillary pressure-saturation relationships for a single fracture}}, - author={Nuske, K. P.}, - year={2009}, - school={Master’s thesis, Universit{\"a}t Stuttgart} +@ARTICLE{Pardiso, + author = {O. Schenk and K. G\"artner}, + title = {{Solving unsymmetric sparse systems of linear equations with {PARDISO}}}, + journal = {Future Generation Computer Systems}, + year = {2004}, + volume = {20}, + pages = {475 - 487}, + number = {3}, + doi = {DOI: 10.1016/j.future.2003.07.011}, + issn = {0167-739X}, + keywords = {Computational sciences}, + url = {\url{http://www.sciencedirect.com/science/article/B6V06-49NXY7J-F/2/e8260e5d8f19639019cddea4776c024c}} } @@ -1050,123 +1177,105 @@ doi ={10.1039/TF9615701200} url={https://www.researchgate.net/profile/Christopher_Ochs/publication/229811805_Structural_and_electrochemical_characterization_of_zirconium_and_silicon_based_sol-gel_coatings_for_corrosion_protection/links/09e41501118fbee7b2000000.pdf} } -@article{oliveira2003, - title={{Estimation of primary drainage three-phase relative permeability for organic liquid transport in the vadose zone}}, - author={Oliveira, L. I. and Demond, A. H.}, - journal={Journal of Contaminant Hydrology}, - volume={66}, - number={3}, - pages={261--285}, - year={2003}, - publisher={Elsevier}, - url={https://dx.doi.org/10.1016/S0169-7722(03)00029-9} +@techreport{walker1981, + title={{Studies of heat transfer and water migration in soils. Final report}}, + author={Walker, W. R. and Sabey, J. D. and Hampton, D. R.}, + year={1981}, + institution={Colorado State Univ., Fort Collins (USA). Solar Energy Applications Lab.}, + url={https://www.osti.gov/scitech/biblio/6149346} } - -@BOOK{ORTEGA2000, - title = {{Iterative Solution of Nonlinear Equations in Several Variables}}, - publisher = {Society for Industrial and Applied Mathematics}, - year = {2000}, - author = {J. M. Ortega and W. C. Rheinboldt}, - address = {Philadelphia, PA, USA}, - edition = {1} +@Article{Kunz2016, +author={{Kunz, P. +and Zarikos, I. M. +and Karadimitriou, N. K. +and Huber, M. +and Nieken, U. +and Hassanizadeh, S. M.}}, +title={{Study of Multi-phase Flow in Porous Media: Comparison of SPH Simulations with Micro-model Experiments}}, +journal={{Transport in Porous Media}}, +year={2016}, +volume={114}, +number={2}, +pages={581--600}, +doi={10.1007/s11242-015-0599-1}, +url={http://dx.doi.org/10.1007/s11242-015-0599-1} } -@PHDTHESIS{PAPAFOTIOU2008, - author = {A. Papafotiou}, - title = {{Numerical investigations of the role of hysteresis in heterogeneous - two-phase flow systems}}, - school = {University of Stuttgart}, - year = {2008} +@article{vargaftik1975, + title={{Tables on the thermophysical properties of liquids and gases in normal and dissociated states}}, + author={Vargaftik, Natan B}, + year={1975}, + publisher={Hemisphere}, + url={https://cds.cern.ch/record/101055} } -@ARTICLE{PARKER1987, - author = {J. C. Parker and R. J. Lenhard and T. Kuppusamy}, - title = {{A Parametric Model for Constitutive Properties Governing Multiphase - Flow in Porous Media}}, - journal = {Water Resources Research}, - year = {1987}, - volume = {23}, - pages = {618--624}, - number = {4} +@BOOK{BRONSTEIN-93, + title = {{Taschenbuch der Mathematik}}, + publisher = {Verlag Harri Deutsch}, + year = {1993}, + author = {I. N. Bronstein and K. A. Semendjajew and G. Musiol and H. M\"{u}hlig}, + edition = {6} } -@Article{Pebesma1998a, - author = {Edzer J. Pebesma and Cees G. Wesseling}, - title = {{Gstat: a program for geostatistical modelling, prediction and simulation}}, - journal = {Computers \& Geosciences}, - year = {1998}, - volume = {24}, - pages = {17--31}, - number = {1}, - doi = {http://dx.doi.org/10.1016/S0098-3004(97)00082-4}, - issn = {0098-3004}, - url = {http://dx.doi.org/10.1016/S0098-3004(97)00082-4} +@MISC{FENICS-HP, + title = {{The {FEniCS} Project: \url{http://www.fenicsproject.org/}}}, + key = {FENICS} } -@BOOK{PRANDTL2002, - title = {{F\"{u}hrer durch die Str\"{o}mungslehre}}, - publisher = {Vieweg}, - year = {2002}, - author = {L. Prandtl and H. Oertel}, - edition = {11} +@MISC{APACHE-SUBVERSION-HP, + title = {{The Apache Subversion Website: \url{http://subversion.apache.org/}}}, + key = {APACHE-SUBVERSION} } -@MISC{A3:IAPWS:2003, - author = {IAPWS (The International Association for the Properties of Water - and Steam)}, - title = {{Revised Release on the IAPS Formulation 1985 for the Viscosity of - Ordinary Water Substance}}, - howpublished = {\url{http://www.iapws.org/}}, - year = {2003} -} -@MISC{IAPWS1997, - author = {IAPWS (The International Association for the Properties of Water - and Steam)}, - title = {{Revised Release on the IAPWS Industrial Formulation 1997 for the - Thermodynamic Properties of Water and Steam}}, - howpublished = {\url{http://www.iapws.org/IF97-Rev.pdf}}, - year = {1997} +@ARTICLE{BEAUCHEMIN1995, + author = {S. S. Beauchemin and J. L. Barron}, + title = {{The computation of optical flow}}, + journal = {ACM Computing Surveys}, + year = {1995}, + volume = {27}, + pages = {433--466}, + number = {3} } -% no doi or link available -@misc{cooper2008, - title={{Release of the IAPWS formulation 2008 for the viscosity of ordinary water substance}}, - author={Cooper, J. R. and Dooley, R. B.}, - year={2008}, - publisher={The International Association of the Properties of Water and Steam, Berlin, Germany} +@Article{alugrid2016, + author = {Martin Alkämper and Andreas Dedner and Robert Klöfkorn and Martin Nolte}, + title = {{The DUNE-ALUGrid Module}}, + journal = {Archive of Numerical Software}, + year = {2016}, + volume = {4}, + number = {1}, + pages = {1--28}, + doi = {10.11588/ans.2016.1.23252}, + issn = {2197-8263}, + keywords = {Numerical software, Adaptive-parallel grid, Load Balancing, DUNE}, + url = {http://journals.ub.uni-heidelberg.de/index.php/ans/article/view/23252} } -@BOOK{reid1987, - title = {{The Properties of Gases and Liquids}}, - publisher = {McGraw-Hill Inc.}, - year = {1987}, - author = {Reid, R. C. and Prausnitz, J.M. and Poling, B. E.}, - url={https://www.osti.gov/scitech/biblio/6504847} +@TECHREPORT{subgrid, + author = {C. Gr\"aser and O. Sander}, + title = {{The dune-subgrid Module and Some Applications}}, + year = {2009}, + note = {Matheon 566} } -@article{rutqvist2002, - title={A study of caprock hydromechanical changes associated with CO2-injection into a brine formation}, - author={Rutqvist, Jonny and Tsang, Chin-Fu}, - journal={Environmental Geology}, - volume={42}, - number={2-3}, - pages={296--305}, - year={2002}, - publisher={Springer} +@BOOK{MUSKAT1937, + title = {{The Flow of Homogeneous Fluids Through Porous Media}}, + publisher = {McGraw-Hill}, + year = {1937}, + author = {M. Muskat}, + edition = {1} } -@article{palliser1998, - title={{A model for deep geothermal brines, III: Thermodynamic properties--enthalpy and viscosity}}, - author={Palliser, C. and McKibbin, R.}, - journal={Transport in Porous Media}, - volume={33}, - number={1-2}, - pages={155--171}, - year={1998}, - publisher={Springer}, - url={https://dx.doi.org/10.1023/A:1006549810989} +@BOOK{A3:whitaker:1999, + title = {{The Method of Volume Averaging}}, + publisher = {Kluwer Academic Publishers}, + year = {1999}, + author = {Whitaker, S.}, + volume = {13}, + series = {Theory and Applications of Transport in Porous Media}, + address = {Dordrecht} } @@ -1179,119 +1288,47 @@ doi ={10.1039/TF9615701200} url={https://dx.doi.org/10.1036/0070116822} } - -@ARTICLE{Pardiso, - author = {O. Schenk and K. G\"artner}, - title = {{Solving unsymmetric sparse systems of linear equations with {PARDISO}}}, - journal = {Future Generation Computer Systems}, - year = {2004}, - volume = {20}, - pages = {475 - 487}, - number = {3}, - doi = {DOI: 10.1016/j.future.2003.07.011}, - issn = {0167-739X}, - keywords = {Computational sciences}, - url = {\url{http://www.sciencedirect.com/science/article/B6V06-49NXY7J-F/2/e8260e5d8f19639019cddea4776c024c}} -} - -@article{peng1976, - title={{A new two-constant equation of state}}, - author={Peng, D.-Y. and Robinson, D. B.}, - journal={Industrial \& Engineering Chemistry Fundamentals}, - volume={15}, - number={1}, - pages={59--64}, - year={1976}, - publisher={ACS Publications}, - url={https://dx.doi.org/10.1021/i160057a011} -} - - -@article{prydz1972, - title={An Improved Oxygen Vapor Pressure Representation}, - author={Prydz, R.}, - journal={Metrologia}, - volume={8}, - number={1}, - pages={1}, - year={1972}, - publisher={IOP Publishing}, - url={https://dx.doi.org/10.1088/0026-1394/8/1/002} -} - -@misc{sander1999, - title={{Compilation of Henry's law constants for inorganic and organic species of potential importance in environmental chemistry}}, - author={Sander, R.}, - year={1999}, - publisher={Max-Planck Institute of Chemistry, Air Chemistry Department Mainz, Germany}, - url={http://enviromap.utah.gov/businesses/E/EnSolutions/depleteduranium/performassess/compliancereport/docs/2014/07Jul/supinfo/appreferences/Sander1999.pdf} -} - -@PHDTHESIS{SHETA1999, - author = {H. Sheta}, - title = {{Simulation von Mehrphasenvorg\"{a}engen in por\"{o}sen Medien unter - Einbeziehung von Hystereseeffekten}}, - school = {University of Stuttgart}, - year = {1999} -} - -@ARTICLE{SPAETH1969, - author = {H. Sp{\"{a}}th}, - title = {{Exponential Spline Interpolation}}, - journal = {Computing}, - year = {1969}, - volume = {4}, - pages = {225--233}, - number = {3}, - key = {Spa69} +@BOOK{reid1987, + title = {{The Properties of Gases and Liquids}}, + publisher = {McGraw-Hill Inc.}, + year = {1987}, + author = {Reid, R. C. and Prausnitz, J.M. and Poling, B. E.}, + url={https://www.osti.gov/scitech/biblio/6504847} } -@article{span1996, - title={{A new equation of state for carbon dioxide covering the fluid region from the triple-point temperature to 1100 K at pressures up to 800 MPa}}, - author={Span, R. and Wagner, W.}, - journal={Journal of physical and chemical reference data}, - volume={25}, - number={6}, - pages={1509--1596}, - year={1996}, - publisher={AIP Publishing}, - url={https://dx.doi.org/10.1063/1.555991} -} -@article{span2000, - title={{A reference equation of state for the thermodynamic properties of nitrogen for temperatures from 63.151 to 1000 K and pressures to 2200 MPa}}, - author={Span, R. and Lemmon, E. W. and Jacobsen, R. T. and Wagner, W. and Yokozeki, A.}, - journal={Journal of Physical and Chemical Reference Data}, - volume={29}, - number={6}, - pages={1361--1433}, - year={2000}, - publisher={AIP Publishing}, - url={https://dx.doi.org/10.1063/1.1349047} +@ARTICLE{AGRAWAL2001, + author = {K. Agrawal and P. N. Loezos and M. Syamlal and S. Sundaresan}, + title = {{The Role of Meso-Scale Structures in Rapid Gas-Solid Flows}}, + journal = {Journal of Fluid Mechanics}, + year = {2001}, + pages = {151--185}, + number = {445} } -@ARTICLE{SPE5, - author = {J. E. Killough and C. A. Kossack}, - title = {{Fifth Comparative Solution Project: Evaluation of Miscible Flood Simulators}}, - journal = {Society of Petroleum Engineers}, - year = {1987}, - volume = {SPE 16000} +@PHDTHESIS{CLASS2001, + author = {H. Class}, + title = {{Theorie und numerische Modellierung nichtisothermer Mehrphasenprozesse + in NAPL-kontaminierten por\"{o}sen Medien.}}, + school = {University of Stuttgart}, + year = {2001} } -@BOOK{A3:Stauffer:1984, - title = {{Introduction to Percolation Theory}}, - publisher = {Taylor \& Francis}, - year = {1994}, - author = {Stauffer, F. and Aharnony, A.} +@BOOK{A3:class:2001, + title = {{Theorie und numerische Modellierung nichtisothermer Mehrphasenprozesse + in NAPL-kontaminierten por\"osen Medien}}, + publisher = {Institut f\"ur Wasserbau, Universit\"at Stuttgart}, + year = {2001}, + author = {Class, H.}, + volume = {105}, + series = {Mitteilungsheft} } -@BOOK{SAENDIG-05, - title = {{Mathematische Methoden in der Kontinuumsmechanik}}, - publisher = {Institut f\"{u}r Angewandte Analysis und Numerische Simulation}, - year = {2005}, - author = {A. - M. S{\"{a}}ndig}, - edition = {1}, - key = {Sae05} +@BOOK{A3:lancaster:1969, + title = {{Theory of Matrices}}, + publisher = {Academic Press, Inc.\ (London) Ltd.}, + year = {1969}, + author = {Lancaster, Peter} } @article{somerton1974, @@ -1307,48 +1344,64 @@ doi ={10.1039/TF9615701200} } -@article{spycher2003, - title={{CO 2-H 2 O mixtures in the geological sequestration of CO 2. I. Assessment and calculation of mutual solubilities from 12 to 100 C and up to 600 bar}}, - author={Spycher, N. and Pruess, K. and Ennis-King, J.}, - journal={Geochimica et cosmochimica acta}, - volume={67}, - number={16}, - pages={3015--3031}, - year={2003}, - publisher={Elsevier}, - url={https://dx.doi.org/10.1016/S0016-7037(03)00273-4} +@techreport{johansen1977, + title={{Thermal conductivity of soils}}, + author={Johansen, O.}, + year={1977}, + institution={DTIC Document}, + url={http://oai.dtic.mil/oai/oai?verb=getRecord&metadataPrefix=html&identifier=ADA044002} } - -@article{spycher2005, - title={{CO 2-H 2 O mixtures in the geological sequestration of CO 2. II. Partitioning in chloride brines at 12--100 C and up to 600 bar}}, - author={Spycher, N. and Pruess, K.}, - journal={Geochimica et Cosmochimica Acta}, - volume={69}, - number={13}, - pages={3309--3320}, +@phdthesis{ebigbo2005, + title={{Thermal effects of carbon dioxide sequestration in the subsurface}}, + author={Ebigbo, A.}, year={2005}, - publisher={Elsevier}, - url={https://dx.doi.org/10.1016/j.gca.2005.01.015} + school={Master’s thesis, Institut f{\"u}r Wasserbau, Universit{\"a}t Stuttgart}, + url={https://www.hydrosys.uni-stuttgart.de/institut/hydrosys/publikationen/paper/Dipl_Anozie_Ebigbo.pdf} +} + +@article{michaelides1981, + title={{Thermodynamic properties of geothermal fluids}}, + author={Michaelides, E. E.}, + journal={Trans.-Geotherm. Resour. Counc.;(United States)}, + volume={5}, + number={CONF-811015-}, + year={1981}, + publisher={Univ. of Delaware, Newark}, + url={https://www.osti.gov/scitech/biblio/6760030} } -%no doi or link available -@article{tchobanoglous1985, - title={Water Quality: Characteristics}, - author={Tchobanoglous, G. and Schroeder, E. D.}, - journal={Modeling, Modification: Addison-Wesley}, - year={1985} +@MISC{NIST, + title = {{Thermophysical Properties of Fluid Systems: \url{http://webbook.nist.gov/chemistry/fluid/}}}, + key = {NIST} } -@ARTICLE{TENG2000, - author = {H. Teng and T. S. Zhao}, - title = {{An extension of Darcy's law to non-Stokes flow in porous media}}, - journal = {Chemical engineering science}, - year = {2000}, - volume = {55}, - pages = {2727--2735}, - number = {14} +@TECHREPORT{A3:forsyth:1993, + author = {Forsyth, P. A.}, + title = {{Three dimensional modeling of steam flush for DNAPL site remediation}}, + institution = {Dep. of Computer Science}, + year = {1993}, + address = {University of Waterloo}, + note = {CS-93-56} +} + +@ARTICLE{A3:coats:1974, + author = {Coats, K. H. and Chieh Chu, W. D. G. and Marcum, B. E.}, + title = {{Three-dimensional simulation of steamflooding}}, + journal = {Society of Petroleum Engineers Journal}, + year = {1974}, + month = {December} +} + +@ARTICLE{MUCCINO1998, + author = {J. C. Muccino and W. G. G. Gray and L. A. Ferrand}, + title = {{Toward an Improved Understanding of Multiphase Flow in Porous Media}, + journal = {Reviews of Geophysics}}, + year = {1998}, + volume = {36}, + pages = {401--422}, + number = {3} } @article{ward1964, @@ -1362,6 +1415,27 @@ doi ={10.1039/TF9615701200} publisher={ASCE} } +@INBOOK{A3:bastian:1997, + pages = {27--40}, + title = {{UG: A flexible software toolbox for solving partial differential + equations.}}, + publisher = {Springer Verlag}, + year = {1997}, + author = {Bastian, P. and Birken, K. and Lang, S. and Johannsen, K. and Neuss, + N. and Rentz-Reichert, H. and Wieners, C.}, + volume = {1}, + series = {Computing and Visualization in Science} +} + +@MASTERSTHESIS{A3:grass:2005, + author = {Grass, C.}, + title = {{Untersuchung von Randbedingungen bei der numerischen Simulation von + Zweiphasenstr\"omungen in por\"osen Medien}}, + school = {Institut f\"ur Wasserbau, Universit\"at Stuttgart}, + year = {2005}, + month = {January} +} + @ARTICLE{A3:Wen:1996, author = {Wen, X. H. and G\'{o}mez-Hern\'{a}ndez, J. J.}, @@ -1372,52 +1446,20 @@ doi ={10.1039/TF9615701200} pages = {ix--xxxii} } -@BOOK{A3:whitaker:1999, - title = {{The Method of Volume Averaging}}, - publisher = {Kluwer Academic Publishers}, - year = {1999}, - author = {Whitaker, S.}, - volume = {13}, - series = {Theory and Applications of Transport in Porous Media}, - address = {Dordrecht} -} - -@ARTICLE{WHITAKER1985, - author = {S. Whitaker}, - title = {{Flow in porous media I: A theoretical derivation of Darcy's law}}, +@ARTICLE{A3:King:1996, + author = {King, P. R.}, + title = {{Upscaling Permeability: Error Analysis for Renormalisation}}, journal = {Transport in Porous Media}, - year = {1985}, - volume = {1}, - pages = {3--25}, - number = {1} -} - -@ARTICLE{A3:Williams:1989, - author = {Williams, J. K.}, - title = {{Simple Renormalisation Schemes for Calculating Effective Properties - of Heterogeneous Reservoirs}}, - journal = {1st European Conference on the Mathematics of Oil Recovery, Cambridge, - UK, July 1989}, - year = {1989} -} - -@ARTICLE{GEUZAINE2009, - title={{Gmsh: A 3-{D} finite element mesh generator with built-in pre-and post-processing facilities}}, - author={Geuzaine, C. and Remacle, J. - F.}, - journal={International Journal for Numerical Methods in Engineering}, - volume={79}, - number={11}, - pages={1309--1331}, - year={2009}, - publisher={Wiley Online Library} + year = {1996}, + volume = {23}, + pages = {337--354} } -@BOOK{GLADROW2000, - title = {{Lattice-Gas Cellular Automata and Lattice Boltzmann Models: An Introduction}}, - publisher = {Springer}, +@BOOK{A3:looney:2000, + title = {{Vadose Zone}}, + publisher = {Batelle Press, Columbus OH}, year = {2000}, - author = {D. A. Wolf-Gladrow}, - edition = {1} + author = {Looney, B. B. and Falta, R. W.} } @article{gmehling1980, @@ -1432,124 +1474,54 @@ doi ={10.1039/TF9615701200} url={https://dx.doi.org/10.1021/je60084a016} } -@article{vargaftik1975, - title={{Tables on the thermophysical properties of liquids and gases in normal and dissociated states}}, - author={Vargaftik, Natan B}, - year={1975}, - publisher={Hemisphere}, - url={https://cds.cern.ch/record/101055} -} - -@article{watanabe2004, - title={{Guideline on the Henry's Constant and Vapor-Liquid Distribution Constant for Gases in H2O and D2O at High Temperatures}}, - author={Watanabe, K. and Dooley, R. B.}, - journal={International Association for the Properties of Water and Steam}, - year={2004}, - url={http://www.iapws.org/relguide/HenGuide.pdf} -} - -@techreport{walker1981, - title={{Studies of heat transfer and water migration in soils. Final report}}, - author={Walker, W. R. and Sabey, J. D. and Hampton, D. R.}, - year={1981}, - institution={Colorado State Univ., Fort Collins (USA). Solar Energy Applications Lab.}, - url={https://www.osti.gov/scitech/biblio/6149346} -} - -@article{xu2003, - title={{Diffusion of water in liquid and supercritical carbon dioxide: an NMR study}}, - author={Xu, B. and Nagashima, K. and DeSimone, J. M. and Johnson, C. S.}, - journal={The Journal of Physical Chemistry A}, - volume={107}, - number={1}, - pages={1--3}, - year={2003}, - publisher={ACS Publications}, - url={https://dx.doi.org/10.1021/jp021943g} -} - -@MISC{ALUGRID-HP, - title = {T{he {ALUG}rid Website: \url{http://www.mathematik.uni-freiburg.de/IAM/Research/alugrid/}}}, - key = {ALU} -} - -@MISC{APACHE-SUBVERSION-HP, - title = {{The Apache Subversion Website: \url{http://subversion.apache.org/}}}, - key = {APACHE-SUBVERSION} -} - -@MISC{CMAKE-DOC, - title = {{{CMake} Documentation: \url{http://www.cmake.org/documentation/}}}, - key = {CMAKE} -} - -@MISC{DOXYGEN-HP, - title = {{Doxygen Homepage: \url{http://www.stack.nl/~dimitri/doxygen/}}}, - key = {DOXYGEN} -} - -@MISC{DUMUX-HP, - title = {{{DuMuX} homepage: \url{http://www.dumux.org/}}}, - key = {DUMUX} -} - -@MISC{DUMUX-DOWNLOAD, - title = {{{DuMuX} download folder: \url{http://www.dumux.org/download/}}}, - key = {DUMUX-DOWNLOAD} -} - -@MISC{DUNE-CMAKE, - title = {{Building Dune with CMake -- Frequently Asked Questions}: \url{http://www.dune-project.org/doc/buildsystem/cmakefaq.pdf}}, - key = {DUNE-CMAKE} -} - -@MISC{DUNE-DOWNLOAD-GIT, - title = {{Download of {DUNE} via Git: \url{http://www.dune-project.org/downloadgit.html}}}, - key = {DUNE-DOWNLOAD-GIT} -} - -@MISC{DUNE-EXT-LIB, - title = {{Use of external libraries in DUNE \url{http://www.dune-project.org/external_libraries/index.html}}}, - key = {DUNE-EXTERNAL-LIBRARIES} -} - -@MISC{DUNE-EXT-MOD, - title = {{Use of external modules in DUNE \url{http://www.dune-project.org/downloadext.html}}}, - key = {DUNE-EXTERNAL-MODULES} +@article{ambrose1989, + title={{Vapour pressures up to their critical temperatures of normal alkanes and 1-alkanols}}, + author={Ambrose, D. and Walton, J.}, + journal={Pure and Applied Chemistry}, + volume={61}, + number={8}, + pages={1395--1403}, + year={1989}, + url={https://dx.doi.org/10.1351/pac198961081395} } -@MISC{DUNE-HP, - title = {{The {DUNE} Project: \url{http://www.dune-project.org/}}}, - key = {DUNE} +@Article{tchobanoglous1985, + author = {Tchobanoglous, G. and Schroeder, E. D.}, + title = {{Water Quality: Characteristics}}, + journal = {Modeling, Modification: Addison-Wesley}, + year = {1985} } -@MISC{DUNE-INST, - title = {{Installation notes to {DUNE}: \url{http://www.dune-project.org/doc/installation-notes.html}}}, - key = {DUNE-INST} -} -@MISC{FENICS-HP, - title = {{The {FEniCS} Project: \url{http://www.fenicsproject.org/}}}, - key = {FENICS} +@ARTICLE{DITTERICH1996, + author = {E. Ditterich}, + title = {{Wirbel um den Bodenschutz}}, + journal = {Umweltmagazin}, + year = {1996}, + pages = {46--48}, + number = {4} } -@MISC{NIST, - title = {{Thermophysical Properties of Fluid Systems: \url{http://webbook.nist.gov/chemistry/fluid/}}}, - key = {NIST} +@Misc{ALUGRID-HP, + author = {{ALUGrid Homepage}}, + timestamp = {2017.02.27}, + url = {https://www.dune-project.org/modules/dune-alugrid/} } -@MISC{STL-REF-HP, - title = {{A {STL} Reference: \url{http://www.cplusplus.com/reference/stl/}}}, - key = {STL} +@Misc{DUNE-HP, + author = {{DUNE Homepage}}, + url = {http://www.dune-project.org} } -@MISC{UG-HP, - title = {{{UG} Homepage: \url{http://www.iwr.uni-heidelberg.de/frame/iwrwikiequipment/software/ug}}}, - key = {UG} +@Misc{IAPWS-HP, + author = {{IAPWS Homepage}}, + timestamp = {2017.02.27}, + url = {http://www.iapws.org/} } -@MISC{WIKIPED-ALIASING, - title = {{Wikipedia about aliasing data location in memory: \url{http://en.wikipedia.org/wiki/Aliasing\_(computing)}}}, - key = {WikipediaAliasing} +@Misc{UG-HP, + author = {{UG Homepage}}, + key = {UG}, + url = {https://www.dune-project.org/modules/dune-uggrid/} } -- GitLab