From 8ffb5df7b094ccbc46f5c5fab070e973ca6d696a Mon Sep 17 00:00:00 2001
From: Andreas Lauser <and@poware.org>
Date: Fri, 20 Jan 2012 16:36:40 +0000
Subject: [PATCH] fix LaTeX errors in formulas

that was a lot of fun!

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@7478 2fb0f335-1f38-0410-981e-8018bf24f1b0
---
 doc/doxygen/html/dummy.gif                    |  0
 dumux/boxmodels/MpNc/MpNcmodel.hh             | 19 ++++++++++---------
 dumux/decoupled/2p2c/fvpressure2p2c.hh        | 10 +++++-----
 dumux/material/fluidsystems/1pfluidsystem.hh  |  4 ++--
 .../fluidsystems/2pimmisciblefluidsystem.hh   |  4 ++--
 .../material/fluidsystems/basefluidsystem.hh  |  4 ++--
 .../material/fluidsystems/h2on2fluidsystem.hh |  4 ++--
 .../1p2c/interstitialfluidtrailfluidsystem.hh |  4 ++--
 8 files changed, 25 insertions(+), 24 deletions(-)
 delete mode 100644 doc/doxygen/html/dummy.gif

diff --git a/doc/doxygen/html/dummy.gif b/doc/doxygen/html/dummy.gif
deleted file mode 100644
index e69de29bb2..0000000000
diff --git a/dumux/boxmodels/MpNc/MpNcmodel.hh b/dumux/boxmodels/MpNc/MpNcmodel.hh
index dfcd924489..718b67ba4d 100644
--- a/dumux/boxmodels/MpNc/MpNcmodel.hh
+++ b/dumux/boxmodels/MpNc/MpNcmodel.hh
@@ -44,14 +44,15 @@ namespace Dumux
  * the conservation of momentum:
  * \f[
      v_\alpha = - \frac{k_{r\alpha}}{\mu_\alpha} \boldsymbol{K}
-     \left(\text{grad} p_\alpha - \varrho_{\alpha} \boldsymbol{g} \right)
- * \f]
+     \left(
+       \text{grad} p_\alpha - \varrho_{\alpha} \boldsymbol{g} 
+     \right) 
+     \f]
  *
  * By inserting this into the equations for the conservation of the
  * components, one gets one transport equation for each component \f$\kappa\f$
- * \f{equation*}
+ * \f[
  \sum_{\kappa} \left(
-    %
     \phi \frac{\partial \varrho_\alpha x_\alpha^\kappa S_\alpha}{\partial t}
     -
     \nabla \cdot
@@ -60,16 +61,16 @@ namespace Dumux
        \frac{k_{r\alpha}}{\mu_\alpha} \boldsymbol{K}
        (\nabla p_\alpha - \varrho_{\alpha} \boldsymbol{g})
     \right\}
-    \left)
+    \right)
     = q^\kappa
-    \f{equation*}
+    \f]
  * with \f$\overline M_\alpha\f$ being the average molar mass of the phase \f$\alpha\f$:
  * \f[ \overline M_\alpha = \sum_\kappa M^\kappa \; x_\alpha^\kappa \f]
  *
  * For the missing \f$M\f$ model assumptions, the model assumes that
  * if a fluid phase is not present, the sum of the mole fractions of
  * this fluid phase is smaller than \f$1\f$, i.e.
- * \f[ \forall \alpha: S_\alpha = 0 \implies \sum_\kappa x_\alpha^\kappa \leq 1 \]
+ * \f[ \forall \alpha: S_\alpha = 0 \implies \sum_\kappa x_\alpha^\kappa \leq 1 \f]
  *
  * Also, if a fluid phase may be present at a given spatial location
  * its saturation must be positive:
@@ -91,7 +92,7 @@ namespace Dumux
  * \f[ \Phi(a,b) = a + b - \sqrt{a^2 + b^2} \;. \f]
  *
  * Though this model uses
- * \f[ \Phi(a,b) = \min \{a,  b}}\;, \f]
+ * \f[ \Phi(a,b) = \min \{a,  b \}\;, \f]
  * because of its piecewise linearity.
  *
  * These equations are then discretized using a fully-implicit vertex
@@ -102,7 +103,7 @@ namespace Dumux
  * The model assumes thermodynamic equilibrium and uses the following
  * primary variables:
  * 
- * - The componentfugacities \f$f^1, \dots, f^{N}
+ * - The componentfugacities \f$f^1, \dots, f^{N}\f$
  * - The pressure of the first phase \f$p_1\f$
  * - The saturations of the first \f$M-1\f$ phases \f$S_1, \dots, S_{M-1}\f$
  * - Temperature \f$T\f$ if the energy equation is enabled
diff --git a/dumux/decoupled/2p2c/fvpressure2p2c.hh b/dumux/decoupled/2p2c/fvpressure2p2c.hh
index bc63604b79..1ef948f11b 100644
--- a/dumux/decoupled/2p2c/fvpressure2p2c.hh
+++ b/dumux/decoupled/2p2c/fvpressure2p2c.hh
@@ -225,7 +225,7 @@ void FVPressure2P2C<TypeTag>::getSource(Dune::FieldVector<Scalar, 2>& sourceEntr
 /** for first == true, there is no storage contribution.
  * for first == false, the storage term comprises the compressibility (due to a change in
  * pressure from last timestep):
- *  \f[ V_i c_{t,i}& \frac{p^t_i - p^{t-\Delta t}_i}{\Delta t} \f]
+ *  \f[ V_i c_{t,i} \frac{p^t_i - p^{t-\Delta t}_i}{\Delta t} \f]
  * and the damped error introduced by the incorrect transport of the last timestep:
  *  \f[ V_i \alpha_r \frac{v_{t} - \phi}{\Delta t} \f].
  * The latter is damped according to Fritz 2011.
@@ -304,8 +304,8 @@ void FVPressure2P2C<TypeTag>::getStorage(Dune::FieldVector<Scalar, 2>& storageEn
 \frac{\frac{\partial v_{t,j}}{\partial C^{\kappa}_j}-\frac{\partial v_{t,i}}{\partial C^{\kappa}_i}}{\Delta x} X^{\kappa}_{\alpha}
     \left( \frac{p_{\alpha,j}^t - p^{t}_{\alpha,i}}{\Delta x} + \varrho_{\alpha} \mathbf{g}\right) \f]
  * This includes a boundary integral and a volume integral, because
- *  \f$ \frac{\partial v_{t,i}}{\partial C^{\kappa}_i}} \f$ is not constant.
- * Here, \f$ \mathbf{u} \f$ is the normalized vector connecting the cell centers, and \f$ \mathbf{n}_{\gamma_{ij} \f$
+ *  \f$ \frac{\partial v_{t,i}}{\partial C^{\kappa}_i} \f$ is not constant.
+ * Here, \f$ \mathbf{u} \f$ is the normalized vector connecting the cell centers, and \f$ \mathbf{n}_{\gamma_{ij}} \f$
  * represents the normal of the face \f$ \gamma{ij} \f$.
  * \param entries The Matrix and RHS entries
  * \param intersection Intersection between cell I and J
@@ -526,9 +526,9 @@ void FVPressure2P2C<TypeTag>::getFlux(Dune::FieldVector<Scalar, 2>& entries,
  *  \f[ - A_{\gamma_{ij}} \cdot \mathbf{K} \cdot \mathbf{u} \cdot (\mathbf{n}_{\gamma_{ij}} \cdot \mathbf{u})
       \sum_{\alpha} \varrho_{\alpha} \lambda_{\alpha} \sum_{\kappa} \frac{\partial v_{t}}{\partial C^{\kappa}} X^{\kappa}_{\alpha}
     \left( \frac{p_{\alpha,j}^t - p^{t}_{\alpha,i}}{\Delta x} + \varrho_{\alpha} \mathbf{g}\right) \;, \f]
- * where we skip the volume integral assuming  \f$ \frac{\partial v_{t,i}}{\partial C^{\kappa}_i}} \f$
+ * where we skip the volume integral assuming  \f$ \frac{\partial v_{t,i}}{\partial C^{\kappa}_i} \f$
  * to be constant at the boundary.
- * Here, \f$ \mathbf{u} \f$ is the normalized vector connecting the cell centers, and \f$ \mathbf{n}_{\gamma_{ij} \f$
+ * Here, \f$ \mathbf{u} \f$ is the normalized vector connecting the cell centers, and \f$ \mathbf{n}_{\gamma_{ij}} \f$
  * represents the normal of the face \f$ \gamma{ij} \f$.
  * \param entries The Matrix and RHS entries
  * \param intersection Intersection between cell I and J
diff --git a/dumux/material/fluidsystems/1pfluidsystem.hh b/dumux/material/fluidsystems/1pfluidsystem.hh
index ecdf9ef31d..0fd1909083 100644
--- a/dumux/material/fluidsystems/1pfluidsystem.hh
+++ b/dumux/material/fluidsystems/1pfluidsystem.hh
@@ -282,9 +282,9 @@ public:
      *        component in a fluid phase [mol^2 * s / (kg*m^3)]
      *
      * Molecular diffusion of a compoent \f$\kappa\f$ is caused by a
-     * gradient of the chemical potential and follows the law
+     * mathbf{grad}ient of the chemical potential and follows the law
      *
-     * \f[ J = - D \grad mu_\kappa \f]
+     * \f[ J = - D \mathbf{grad} mu_\kappa \f]
      *
      * where \f$\mu_\kappa\f$ is the component's chemical potential,
      * \f$D\f$ is the diffusion coefficient and \f$J\f$ is the
diff --git a/dumux/material/fluidsystems/2pimmisciblefluidsystem.hh b/dumux/material/fluidsystems/2pimmisciblefluidsystem.hh
index ec0f80b09d..bb63ed14b9 100644
--- a/dumux/material/fluidsystems/2pimmisciblefluidsystem.hh
+++ b/dumux/material/fluidsystems/2pimmisciblefluidsystem.hh
@@ -313,9 +313,9 @@ public:
      *        a component in a fluid phase [mol^2 * s / (kg*m^3)]
      *
      * Molecular diffusion of a compoent \f$\kappa\f$ is caused by a
-     * gradient of the chemical potential and follows the law
+     * mathbf{grad}ient of the chemical potential and follows the law
      *
-     * \f[ J = - D \grad mu_\kappa \f]
+     * \f[ J = - D \mathbf{grad} mu_\kappa \f]
      *
      * where \f$\mu_\kappa\f$ is the component's chemical potential,
      * \f$D\f$ is the diffusion coefficient and \f$J\f$ is the
diff --git a/dumux/material/fluidsystems/basefluidsystem.hh b/dumux/material/fluidsystems/basefluidsystem.hh
index a61a2d2273..4a28085e92 100644
--- a/dumux/material/fluidsystems/basefluidsystem.hh
+++ b/dumux/material/fluidsystems/basefluidsystem.hh
@@ -87,9 +87,9 @@ public:
      *        a component in a fluid phase [mol^2 * s / (kg*m^3)]
      *
      * Molecular diffusion of a compoent \f$\kappa\f$ is caused by a
-     * gradient of the chemical potential and follows the law
+     * mathbf{grad}ient of the chemical potential and follows the law
      *
-     * \f[ J = - D \grad mu_\kappa \f]
+     * \f[ J = - D \mathbf{grad} mu_\kappa \f]
      *
      * where \f$\mu_\kappa\f$ is the component's chemical potential,
      * \f$D\f$ is the diffusion coefficient and \f$J\f$ is the
diff --git a/dumux/material/fluidsystems/h2on2fluidsystem.hh b/dumux/material/fluidsystems/h2on2fluidsystem.hh
index de5e897bdf..5e8f420a60 100644
--- a/dumux/material/fluidsystems/h2on2fluidsystem.hh
+++ b/dumux/material/fluidsystems/h2on2fluidsystem.hh
@@ -501,9 +501,9 @@ public:
      *        component in a fluid phase [mol^2 * s / (kg*m^3)]
      *
      * Molecular diffusion of a compoent \f$\kappa\f$ is caused by a
-     * gradient of the chemical potential and follows the law
+     * mathbf{grad}ient of the chemical potential and follows the law
      *
-     * \f[ J = - D \grad mu_\kappa \f]
+     * \f[ J = - D \mathbf{grad} mu_\kappa \f]
      *
      * where \f$\mu_\kappa\f$ is the component's chemical potential,
      * \f$D\f$ is the diffusion coefficient and \f$J\f$ is the
diff --git a/test/boxmodels/1p2c/interstitialfluidtrailfluidsystem.hh b/test/boxmodels/1p2c/interstitialfluidtrailfluidsystem.hh
index 11afa681cb..489a84f9af 100644
--- a/test/boxmodels/1p2c/interstitialfluidtrailfluidsystem.hh
+++ b/test/boxmodels/1p2c/interstitialfluidtrailfluidsystem.hh
@@ -257,9 +257,9 @@ public:
      *        component in a fluid phase [mol^2 * s / (kg*m^3)]
      *
      * Molecular diffusion of a compoent \f$\kappa\f$ is caused by a
-     * gradient of the chemical potential and follows the law
+     * mathbf{grad}ient of the chemical potential and follows the law
      *
-     * \f[ J = - D \grad mu_\kappa \f]
+     * \f[ J = - D \mathbf{grad} mu_\kappa \f]
      *
      * where \f$\mu_\kappa\f$ is the component's chemical potential,
      * \f$D\f$ is the diffusion coefficient and \f$J\f$ is the
-- 
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