diff --git a/configure.ac b/configure.ac
index 1699216f8b6369d8579a41482471d08406782a0e..8929970f41bd685cc591108a8fae11ed79098b8a 100644
--- a/configure.ac
+++ b/configure.ac
@@ -84,6 +84,12 @@ LIBS="$DUNE_LIBS $ALL_PKG_LIBS $PARDISO_LIBS"
 
 AC_CONFIG_FILES([dumux.pc
     Makefile
+    appl/Makefile
+    appl/lecture/Makefile
+    appl/lecture/msm/Makefile
+    appl/lecture/msm/1p2cvs2p/Makefile
+    appl/lecture/msm/buckleyleverett/Makefile
+    appl/lecture/msm/mcwhorter/Makefile
     doc/Makefile 
     doc/doxygen/Makefile 
     doc/doxygen/Doxyfile