[fix][cmake] Fix the CMakeLists.txt in the source folder

dumux/common/CMakeLists.txt

@@ -20,6 +20,7 @@ exceptions.hh
 fixedlengthspline_.hh
 fvproblem.hh
 indextraits.hh
+integrate.hh
 intersectionmapper.hh
 intrange.hh
 loggingparametertree.hh

dumux/discretization/CMakeLists.txt

 add_subdirectory(box)
 add_subdirectory(cellcentered)
 add_subdirectory(fem)
-add_subdirectory(staggered)
 add_subdirectory(projection)
+add_subdirectory(staggered)
 
 install(FILES
 basefvgridgeometry.hh
+basegridgeometry.hh
 box.hh
 ccmpfa.hh
 cctpfa.hh

dumux/flux/CMakeLists.txt

@@ -15,6 +15,7 @@ fourierslaw.hh
 fourierslawnonequilibrium.hh
 hookeslaw.hh
 maxwellstefanslaw.hh
+referencesystemformulation.hh
 shallowwaterflux.hh
 stationaryvelocityfield.hh
 upwindscheme.hh

dumux/flux/shallowwater/CMakeLists.txt

 install(FILES
 exactriemann.hh
-fluxlimiter.hh
+fluxlimiterlet.hh
 riemannproblem.hh
 DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/flux/shallowwater)

dumux/freeflow/CMakeLists.txt

@@ -6,7 +6,8 @@ add_subdirectory(shallowwater)
 
 install(FILES
 properties.hh
+staggeredupwindmethods.hh
+turbulencemodel.hh
 turbulenceproperties.hh
 volumevariables.hh
-staggeredupwindmethods.hh
 DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/freeflow)

dumux/freeflow/navierstokes/CMakeLists.txt

@@ -2,7 +2,6 @@ add_subdirectory(staggered)
 
 install(FILES
 fluxvariables.hh
-fluxvariablescache.hh
 indices.hh
 iofields.hh
 localresidual.hh

dumux/freeflow/navierstokes/staggered/CMakeLists.txt

@@ -3,4 +3,5 @@ fluxoversurface.hh
 fluxvariables.hh
 localresidual.hh
 staggeredupwindfluxvariables.hh
+velocitygradients.hh
 DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/freeflow/navierstokes/staggered)

dumux/freeflow/shallowwater/CMakeLists.txt

-#install headers
 install(FILES
 boundaryfluxes.hh
 fluxvariables.hh
@@ -8,4 +7,4 @@ localresidual.hh
 model.hh
 problem.hh
 volumevariables.hh
-DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/freeflow/shallowwater/)
+DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/freeflow/shallowwater)

dumux/io/grid/CMakeLists.txt

 install(FILES
+cakegridcreator.hh
 cakegridmanager.hh
 cpgridmanager.hh
 gmshgriddatahandle.hh
 griddata.hh
 gridmanager.hh
-gridmanager_base.hh
-gridmanager_yasp.hh
-gridmanager_oned.hh
-gridmanager_ug.hh
 gridmanager_alu.hh
+gridmanager_base.hh
 gridmanager_foam.hh
 gridmanager_mmesh.hh
+gridmanager_oned.hh
 gridmanager_sp.hh
 gridmanager_sub.hh
+gridmanager_ug.hh
+gridmanager_yasp.hh
+subgridgridcreator.hh
 subgridmanager.hh
 DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/io/grid)

dumux/material/fluidmatrixinteractions/frictionlaws/CMakeLists.txt

 install(FILES
+frictionlaw.hh
 manning.hh
 nikuradse.hh
-frictionlaw.hh
-DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/material/fluidmatrixinteractions/frictionslaws)
+DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/material/fluidmatrixinteractions/frictionlaws)

dumux/multidomain/facet/box/CMakeLists.txt

@@ -3,7 +3,6 @@ couplingmanager.hh
 couplingmapper.hh
 darcyslaw.hh
 elementboundarytypes.hh
-fluxvariablescache.hh
 fvelementgeometry.hh
 fvgridgeometry.hh
 localresidual.hh

dumux/nonlinear/CMakeLists.txt

 install(FILES
 newtonconvergencewriter.hh
 newtonsolver.hh
+staggerednewtonconvergencewriter.hh
 DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/nonlinear)

dumux/porousmediumflow/CMakeLists.txt

@@ -26,8 +26,10 @@ add_subdirectory(tracer)
 install(FILES
 fluxvariables.hh
 fluxvariablescache.hh
+fluxvariablescachefiller.hh
 problem.hh
 properties.hh
+velocity.hh
 velocityoutput.hh
 volumevariables.hh
 DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/porousmediumflow)