diff --git a/dumux/CMakeLists.txt b/dumux/CMakeLists.txt
index 87cb87d8609fb96482771c7c36cd522ef43d221c..90b1256e9af20639361ebbc0a7c0d66af5d9caeb 100644
--- a/dumux/CMakeLists.txt
+++ b/dumux/CMakeLists.txt
@@ -1,3 +1,4 @@
+add_subdirectory("adaptive")
add_subdirectory("common")
add_subdirectory("discretization")
add_subdirectory("freeflow")
diff --git a/dumux/adaptive/CMakeLists.txt b/dumux/adaptive/CMakeLists.txt
new file mode 100644
index 0000000000000000000000000000000000000000..5f56a25371676e4a1b0700f6431e71e20e7e93e6
--- /dev/null
+++ b/dumux/adaptive/CMakeLists.txt
@@ -0,0 +1,7 @@
+#install sources
+install(FILES
+adapt.hh
+griddatatransfer.hh
+initializationindicator.hh
+markelements.hh
+DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/adaptive)
diff --git a/dumux/adaptive/adapt.hh b/dumux/adaptive/adapt.hh
new file mode 100644
index 0000000000000000000000000000000000000000..8d2a78b4bbc27d607ed620e329c6a1ae67bc7f8b
--- /dev/null
+++ b/dumux/adaptive/adapt.hh
@@ -0,0 +1,62 @@
+// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
+// vi: set et ts=4 sw=4 sts=4:
+/*****************************************************************************
+ * See the file COPYING for full copying permissions. *
+ * *
+ * This program is free software: you can redistribute it and/or modify *
+ * it under the terms of the GNU General Public License as published by *
+ * the Free Software Foundation, either version 2 of the License, or *
+ * (at your option) any later version. *
+ * *
+ * This program is distributed in the hope that it will be useful, *
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
+ * GNU General Public License for more details. *
+ * *
+ * You should have received a copy of the GNU General Public License *
+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
+ *****************************************************************************/
+/*!
+ * \file
+ * \brief A free function for h-adaptivity.
+ */
+#ifndef DUMUX_ADAPTIVE_ADAPT_HH
+#define DUMUX_ADAPTIVE_ADAPT_HH
+
+#include "griddatatransfer.hh"
+
+namespace Dumux
+{
+
+/*!
+ * \brief Adapt the grid.
+ *
+ * \param grid The grid to adapt
+ * \param dataTransfer A class that performs the data
+ * transfer from the old to the new grid.
+ */
+template<class Grid>
+bool adapt(Grid& grid, GridDataTransfer& dataTransfer)
+{
+ //! Do pre-adaption step of the grid
+ const bool mightCoarsen = grid.preAdapt();
+
+ //! Let the helper do storage of variables
+ dataTransfer.store();
+
+ //! adapt the grid
+ const bool refine = grid.adapt();
+
+ //! (Re-)construct variables to new grid
+ dataTransfer.reconstruct();
+
+ // delete markers in grid
+ grid.postAdapt();
+
+ //! return boolean if grid has been changed
+ return mightCoarsen || refine;
+}
+
+} // end namespace Dumux
+
+#endif /* DUMUX_ADAPTIVE_ADAPT_HH */
diff --git a/dumux/adaptive/griddatatransfer.hh b/dumux/adaptive/griddatatransfer.hh
new file mode 100644
index 0000000000000000000000000000000000000000..e89f68391aaf8bee3938407d7972a70571b2b26b
--- /dev/null
+++ b/dumux/adaptive/griddatatransfer.hh
@@ -0,0 +1,39 @@
+// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
+// vi: set et ts=4 sw=4 sts=4:
+/*****************************************************************************
+ * See the file COPYING for full copying permissions. *
+ * *
+ * This program is free software: you can redistribute it and/or modify *
+ * it under the terms of the GNU General Public License as published by *
+ * the Free Software Foundation, either version 2 of the License, or *
+ * (at your option) any later version. *
+ * *
+ * This program is distributed in the hope that it will be useful, *
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
+ * GNU General Public License for more details. *
+ * *
+ * You should have received a copy of the GNU General Public License *
+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
+ *****************************************************************************/
+#ifndef DUMUX_ADAPTIVE_GRIDDATATRANSFER_HH
+#define DUMUX_ADAPTIVE_GRIDDATATRANSFER_HH
+
+namespace Dumux {
+
+/*!
+ * \brief Interface to be used by classes transferring grid data.
+ */
+class GridDataTransfer
+{
+public:
+ virtual ~GridDataTransfer() = default;
+
+ virtual void store() = 0;
+
+ virtual void reconstruct() = 0;
+};
+
+} // end namespace Dumux
+
+#endif /* DUMUX_ADAPTIVE_GRIDDATATRANSFER_HH */
diff --git a/dumux/adaptive/initializationindicator.hh b/dumux/adaptive/initializationindicator.hh
new file mode 100644
index 0000000000000000000000000000000000000000..3571568892ef3f86f68a48099467ddaba622980b
--- /dev/null
+++ b/dumux/adaptive/initializationindicator.hh
@@ -0,0 +1,289 @@
+// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
+// vi: set et ts=4 sw=4 sts=4:
+/*****************************************************************************
+ * See the file COPYING for full copying permissions. *
+ * *
+ * This program is free software: you can redistribute it and/or modify *
+ * it under the terms of the GNU General Public License as published by *
+ * the Free Software Foundation, either version 2 of the License, or *
+ * (at your option) any later version. *
+ * *
+ * This program is distributed in the hope that it will be useful, *
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
+ * GNU General Public License for more details. *
+ * *
+ * You should have received a copy of the GNU General Public License *
+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
+ *****************************************************************************/
+/**
+* \file
+* \brief Class defining an initialization indicator for grid adaption
+*/
+#ifndef DUMUX_GRIDADAPTINITIALIZATIONINDICATOR_HH
+#define DUMUX_GRIDADAPTINITIALIZATIONINDICATOR_HH
+
+#include <dune/geometry/type.hh>
+
+#include <dumux/discretization/methods.hh>
+
+namespace Dumux
+{
+
+/*!\ingroup GridAdapt
+ * \brief Class defining an initialization indicator for grid adaption.
+ * Accounts for sources and boundaries. Only for grid initialization!
+ *
+ * \tparam TypeTag The problem TypeTag
+ */
+template<class TypeTag>
+class GridAdaptInitializationIndicator
+{
+ using Scalar = typename GET_PROP_TYPE(TypeTag, Scalar);
+ using Problem = typename GET_PROP_TYPE(TypeTag, Problem);
+ using GridView = typename GET_PROP_TYPE(TypeTag, GridView);
+ using Element = typename GridView::Traits::template Codim<0>::Entity;
+
+ using GridVariables = typename GET_PROP_TYPE(TypeTag, GridVariables);
+ using FVGridGeometry = typename GET_PROP_TYPE(TypeTag, FVGridGeometry);
+ using FVElementGeometry = typename GET_PROP_TYPE(TypeTag, FVElementGeometry);
+ using ElementVolumeVariables = typename GET_PROP_TYPE(TypeTag, ElementVolumeVariables);
+ using BoundaryTypes = typename GET_PROP_TYPE(TypeTag, BoundaryTypes);
+
+ static constexpr bool isBox = GET_PROP_VALUE(TypeTag, DiscretizationMethod) == DiscretizationMethods::Box;
+
+public:
+
+ /*! \brief Constructor
+ *
+ * \param problem The problem object
+ * \param fvGridGeometry The finite volume geometry of the grid
+ * \param gridVariables The secondary variables on the grid
+ */
+ GridAdaptInitializationIndicator(std::shared_ptr<const Problem> problem,
+ std::shared_ptr<const FVGridGeometry> fvGridGeometry,
+ std::shared_ptr<const GridVariables> gridVariables)
+ : problem_(problem)
+ , fvGridGeometry_(fvGridGeometry)
+ , gridVariables_(gridVariables)
+ , minLevel_(getParamFromGroup<int>(GET_PROP_VALUE(TypeTag, ModelParameterGroup), "Adaptive.MinLevel"))
+ , maxLevel_(getParamFromGroup<int>(GET_PROP_VALUE(TypeTag, ModelParameterGroup), "Adaptive.MaxLevel"))
+ , refineAtDirichletBC_(getParamFromGroup<bool>(GET_PROP_VALUE(TypeTag, ModelParameterGroup), "Adaptive.RefineAtDirichletBC", true))
+ , refineAtFluxBC_(getParamFromGroup<bool>(GET_PROP_VALUE(TypeTag, ModelParameterGroup), "Adaptive.RefineAtFluxBC", true))
+ , refineAtSource_(getParamFromGroup<bool>(GET_PROP_VALUE(TypeTag, ModelParameterGroup), "Adaptive.RefineAtSource", true))
+ , eps_(getParamFromGroup<Scalar>(GET_PROP_VALUE(TypeTag, ModelParameterGroup), "Adaptive.BCRefinementThreshold", 1e-10))
+ {}
+
+ /*!
+ * \brief Function to set the minimum allowed level.
+ *
+ */
+ void setMinLevel(std::size_t minLevel)
+ {
+ minLevel_ = minLevel;
+ }
+
+ /*!
+ * \brief Function to set the maximum allowed level.
+ *
+ */
+ void setMaxLevel(std::size_t maxLevel)
+ {
+ maxLevel_ = maxLevel;
+ }
+
+ /*!
+ * \brief Function to set the minumum/maximum allowed levels.
+ *
+ */
+ void setLevels(std::size_t minLevel, std::size_t maxLevel)
+ {
+ minLevel_ = minLevel;
+ maxLevel_ = maxLevel;
+ }
+
+ /*!
+ * \brief Function to set if refinement at Dirichlet boundaries is to be used.
+ *
+ */
+ void setRefinementAtDirichletBC(bool refine)
+ {
+ refineAtDirichletBC_ = refine;
+ }
+
+ /*!
+ * \brief Function to set if refinement at sources is to be used.
+ *
+ */
+ void setRefinementAtSources(bool refine)
+ {
+ refineAtSource_ = refine;
+ }
+
+ /*!
+ * \brief Function to set if refinement at sources is to be used.
+ *
+ */
+ void setRefinementAtFluxBoundaries(bool refine)
+ {
+ refineAtFluxBC_ = refine;
+ }
+
+ /*!
+ * \brief Calculates the indicator used for refinement/coarsening for each grid cell.
+ *
+ * \param sol The solution for which indicator is to be calculated
+ */
+ template<class SolutionVector>
+ void calculate(const SolutionVector& sol)
+ {
+ //! prepare an indicator for refinement
+ indicatorVector_.assign(fvGridGeometry_->gridView().size(0), false);
+
+ for (const auto& element : elements(fvGridGeometry_->gridView()))
+ {
+ const auto eIdx = fvGridGeometry_->elementMapper().index(element);
+
+ //! refine any element being below the minimum level
+ if (element.level() < minLevel_)
+ {
+ indicatorVector_[eIdx] = true;
+ continue; //! proceed to the next element
+ }
+
+ //! If refinement at sources/BCs etc is deactivated, skip the rest
+ if (!refineAtSource_ && !refineAtFluxBC_ && !refineAtDirichletBC_)
+ continue;
+
+ //! if the element is already on the maximum permissive level, skip rest
+ if (element.level() == maxLevel_)
+ continue;
+
+ //! get the fvGeometry and elementVolVars needed for the bc and source interfaces
+ auto fvGeometry = localView(*fvGridGeometry_);
+ fvGeometry.bindElement(element);
+
+ auto elemVolVars = localView(gridVariables_->curGridVolVars());
+ elemVolVars.bindElement(element, fvGeometry, sol);
+
+ //! Check if we have to refine around a source term
+ if (refineAtSource_)
+ {
+ for (const auto& scv : scvs(fvGeometry))
+ {
+ auto source = problem_->source(element, fvGeometry, elemVolVars, scv);
+ if (source.infinity_norm() > eps_)
+ {
+ indicatorVector_[eIdx] = true;
+ break; //! element is marked, escape scv loop
+ }
+ }
+ }
+
+ //! Check if we have to refine at the boundary
+ if (!indicatorVector_[eIdx] //! proceed if element is not already marked
+ && element.hasBoundaryIntersections() //! proceed if element is on boundary
+ && (refineAtDirichletBC_ || refineAtFluxBC_)) //! proceed if boundary refinement is active
+ {
+ //! cell-centered schemes
+ if (!isBox)
+ {
+ for (const auto& scvf : scvfs(fvGeometry))
+ {
+ //! skip non-boundary scvfs
+ if (!scvf.boundary())
+ continue;
+
+ const auto bcTypes = problem_->boundaryTypes(element, scvf);
+ //! We assume pure BCs, mixed boundary types are not allowed anyway!
+ if(bcTypes.hasOnlyDirichlet() && refineAtDirichletBC_)
+ {
+ indicatorVector_[eIdx] = true;
+ break; //! element is marked, escape scvf loop
+ }
+
+ //! we are on a pure Neumann boundary
+ else if(refineAtFluxBC_)
+ {
+ const auto fluxes = problem_->neumann(element, fvGeometry, elemVolVars, scvf);
+ if (fluxes.infinity_norm() > eps_)
+ {
+ indicatorVector_[eIdx] = true;
+ break; //! element is marked, escape scvf loop
+ }
+ }
+ }
+ }
+ //! box-scheme
+ else
+ {
+ //! container to store bcTypes
+ std::vector<BoundaryTypes> bcTypes(fvGeometry.numScv());
+
+ //! Get bcTypes and maybe mark for refinement on Dirichlet boundaries
+ for (const auto& scv : scvs(fvGeometry))
+ {
+ bcTypes[scv.indexInElement()] = problem_->boundaryTypes(element, scv);
+ if (refineAtDirichletBC_ && bcTypes[scv.indexInElement()].hasDirichlet())
+ {
+ indicatorVector_[eIdx] = true;
+ break; //! element is marked, escape scv loop
+ }
+ }
+
+ //! If element hasn't been marked because of Dirichlet BCS, check Neumann BCs
+ if (!indicatorVector_[eIdx] && refineAtFluxBC_)
+ {
+ for (const auto& scvf : scvfs(fvGeometry))
+ {
+ //! check if scvf is on Neumann boundary
+ if (scvf.boundary() && bcTypes[scvf.insideScvIdx()].hasNeumann())
+ {
+ const auto fluxes = problem_->neumann(element, fvGeometry, elemVolVars, scvf);
+ if (fluxes.infinity_norm() > eps_)
+ {
+ indicatorVector_[eIdx] = true;
+ break; //! element is marked, escape scvf loop
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+
+ /*! \brief function call operator to return mark
+ *
+ * \return 1 if an element should be refined
+ * -1 if an element should be coarsened
+ * 0 otherwise
+ *
+ * \note In this initialization indicator implementation
+ * element coarsening is not considered.
+ *
+ * \param element A grid element
+ */
+ int operator() (const Element& element) const
+ {
+ if (indicatorVector_[fvGridGeometry_->elementMapper().index(element)])
+ return 1;
+ return 0;
+ }
+
+private:
+ std::shared_ptr<const Problem> problem_; //! The problem to be solved
+ std::shared_ptr<const FVGridGeometry> fvGridGeometry_; //! The finite volume grid geometry
+ std::shared_ptr<const GridVariables> gridVariables_; //! The secondary variables on the grid
+ std::vector<bool> indicatorVector_; //! Indicator for BCs/sources
+
+ int minLevel_; //! The minimum allowed level
+ int maxLevel_; //! The maximum allowed level
+ bool refineAtDirichletBC_; //! Specifies if it should be refined at Dirichlet BCs
+ bool refineAtFluxBC_; //! Specifies if it should be refined at non-zero Neumann BCs
+ bool refineAtSource_; //! Specifies if it should be refined at sources
+ Scalar eps_; //! Threshold for refinement at sources/BCS
+};
+
+}
+#endif
diff --git a/dumux/adaptive/markelements.hh b/dumux/adaptive/markelements.hh
new file mode 100644
index 0000000000000000000000000000000000000000..cb8e28c8c165d75c3198f9fa0f50f4f215e6b563
--- /dev/null
+++ b/dumux/adaptive/markelements.hh
@@ -0,0 +1,64 @@
+// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
+// vi: set et ts=4 sw=4 sts=4:
+/*****************************************************************************
+ * See the file COPYING for full copying permissions. *
+ * *
+ * This program is free software: you can redistribute it and/or modify *
+ * it under the terms of the GNU General Public License as published by *
+ * the Free Software Foundation, either version 2 of the License, or *
+ * (at your option) any later version. *
+ * *
+ * This program is distributed in the hope that it will be useful, *
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
+ * GNU General Public License for more details. *
+ * *
+ * You should have received a copy of the GNU General Public License *
+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
+ *****************************************************************************/
+/*!
+ * \file
+ * \brief A class for h-adaptivity when using finite volume schemes.
+ */
+#ifndef DUMUX_ADAPTIVE_MARKELEMENTS_HH
+#define DUMUX_ADAPTIVE_MARKELEMENTS_HH
+
+namespace Dumux
+{
+
+template<class Grid, class Indicator>
+bool markElements(Grid& grid, Indicator& indicator, bool verbose = true)
+{
+ //! mark elements according to indicator
+ std::size_t refine = 0;
+ std::size_t coarsen = 0;
+ for (const auto& element : elements(grid.leafGridView(), Dune::Partitions::interior))
+ {
+ const auto mark = indicator(element);
+ if (mark > 0)
+ {
+ grid.mark(1, element);
+ ++refine;
+ }
+ else if (mark < 0)
+ {
+ grid.mark(-1, element);
+ ++coarsen;
+ }
+ }
+
+ //! abort if nothing in grid is marked
+ const std::size_t sumRefine = grid.comm().sum(refine);
+ const std::size_t sumCoarsen = grid.comm().sum(coarsen);
+
+ if (grid.comm().rank() == 0 && verbose)
+ std::cout << sumRefine << " cells have been marked to be refined, "
+ << sumCoarsen << " to be coarsened." << std::endl;
+
+ //! return whether or not anything has been marked
+ return sumRefine != 0 || sumCoarsen != 0;
+}
+
+} //end namespace Dumux
+
+#endif /* DUMUX_ADAPTIVE_MARKELEMENTS_HH */
diff --git a/dumux/common/fvproblem.hh b/dumux/common/fvproblem.hh
index 4f9898ae54280cc58545869af74459254a2ed5f6..e31305bde91dadbb7572e209ab19f06c4f4910f8 100644
--- a/dumux/common/fvproblem.hh
+++ b/dumux/common/fvproblem.hh
@@ -34,7 +34,6 @@
#include <dumux/discretization/methods.hh>
//#include <dumux/io/restart.hh>
-//#include <dumux/implicit/adaptive/gridadapt.hh>
namespace Dumux
{
@@ -79,8 +78,6 @@ class FVProblem
static constexpr bool isBox = GET_PROP_VALUE(TypeTag, DiscretizationMethod) == DiscretizationMethods::Box;
- // using GridAdaptModel = ImplicitGridAdapt<TypeTag, adaptiveGrid>;
-
public:
/*!
* \brief Constructor
@@ -93,14 +90,8 @@ public:
// set a default name for the problem
problemName_ = getParamFromGroup<std::string>(GET_PROP_VALUE(TypeTag, ModelParameterGroup), "Problem.Name");
- // TODO this has to be moved to the main file most probably
- // // if we are calculating on an adaptive grid get the grid adapt model
- // if (adaptiveGrid)
- // gridAdapt_ = std::make_shared<GridAdaptModel>(asImp_());
- // gridAdapt().init();
-
// compute which scvs contain point sources
- computePointSourceMap(pointSourceMap_);
+ computePointSourceMap();
}
/*!
@@ -441,11 +432,10 @@ public:
}
//! Compute the point source map, i.e. which scvs have point source contributions
- template<class PointSourceMap>
- void computePointSourceMap(PointSourceMap& pointSourceMap)
+ void computePointSourceMap()
{
// clear the given point source maps in case it's not empty
- pointSourceMap.clear();
+ pointSourceMap_.clear();
// get and apply point sources if any given in the problem
std::vector<PointSource> sources;
@@ -457,7 +447,7 @@ public:
// calculate point source locations and save them in a map
PointSourceHelper::computePointSourceMap(*fvGridGeometry_,
sources,
- pointSourceMap);
+ pointSourceMap_);
}
}
@@ -539,27 +529,6 @@ public:
*/
// \{
- /*!
- * \brief Called by the time manager before the time integration.
- */
- // TODO most likely move to the main file
- // void preTimeStep()
- // {
- // // If adaptivity is used, this method adapts the grid.
- // // Remeber to call the parent class function if this is overwritten
- // // on a lower problem level when using an adaptive grid
- // if (adaptiveGrid && timeManager().timeStepIndex() > 0)
- // {
- // this->gridAdapt().adaptGrid();
-
- // // if the grid changed recompute the source map and the bounding box tree
- // if (asImp_().gridChanged())
- // {
- // computePointSourceMap();
- // }
- // }
- // }
-
/*!
* \brief TODO serialization
*/
diff --git a/dumux/discretization/cellcentered/mpfa/elementfluxvariablescache.hh b/dumux/discretization/cellcentered/mpfa/elementfluxvariablescache.hh
index 6a1aedeb318bfd967484b7e87ed6f00d4f514fac..5aadd98bb9744109771f9ee32fae699bcbe9112d 100644
--- a/dumux/discretization/cellcentered/mpfa/elementfluxvariablescache.hh
+++ b/dumux/discretization/cellcentered/mpfa/elementfluxvariablescache.hh
@@ -165,13 +165,14 @@ public:
for (auto scvfIdx : dataJ.scvfsJ)
globalScvfIndices_[i++] = scvfIdx;
- // reserve memory estimate for interaction volumes and corresponding data
+ // Reserve memory (over-) estimate for interaction volumes and corresponding data.
+ // The overestimate doesn't hurt as we are not in a memory-limited configuration.
+ // We need to avoid reallocation because in the caches we store pointers to the data handles.
const auto numIvEstimate = getNoInteractionVolumesEstimate_(element, assemblyMapI);
- const auto maxBoundaryIv = element.subEntities(dim);
primaryInteractionVolumes_.reserve(numIvEstimate);
- secondaryInteractionVolumes_.reserve(maxBoundaryIv);
+ secondaryInteractionVolumes_.reserve(numIvEstimate);
primaryIvDataHandles_.reserve(numIvEstimate);
- secondaryIvDataHandles_.reserve(maxBoundaryIv);
+ secondaryIvDataHandles_.reserve(numIvEstimate);
// helper class to fill flux variables caches
FluxVariablesCacheFiller filler(problem);
@@ -285,12 +286,19 @@ private:
template<class AssemblyMap>
std::size_t getNoInteractionVolumesEstimate_(const Element& element, const AssemblyMap& assemblyMap)
{
- //! Get the mpfa method only once per simulation
- static const MpfaMethods method = GET_PROP_VALUE(TypeTag, MpfaMethod);
-
// TODO: uncomment as soon as methods are re-implemented
- if (method == MpfaMethods::oMethod /*|| method == MpfaMethods::oMethodFps*/)
- return element.subEntities(dim);
+ // if statements are optimized away by the compiler
+ if (GET_PROP_VALUE(TypeTag, MpfaMethod) == MpfaMethods::oMethod /*|| method == MpfaMethods::oMethodFps*/)
+ {
+ //! Reserve memory for the case of each facet having neighbors being 4 levels higher. Memory limitations
+ //! do not play an important role here as global caching is disabled. In the unlikely case you want
+ //! to use higher local differences in element levels set a higher value for the parameter below
+ //! in your input file (note that some grids might only support levels differences of one anyway)
+ static const unsigned int maxDiff = getParamFromGroup<unsigned int>(GET_PROP_VALUE(TypeTag, ModelParameterGroup),
+ "Grid.MaxLocalElementLevelDifference",
+ 4);
+ return element.subEntities(dim)*maxDiff;
+ }
/* else if (method == MpfaMethods::lMethod)
{
std::size_t numInsideScvfs = MpfaHelper::getNumLocalScvfs(element.geometry().type());
diff --git a/dumux/discretization/cellcentered/tpfa/darcyslaw.hh b/dumux/discretization/cellcentered/tpfa/darcyslaw.hh
index e6701098eb99497a5107f3aeb8f5950497c19474..1dcb394f668242aeec8996cc5ec48aaeb6901da4 100644
--- a/dumux/discretization/cellcentered/tpfa/darcyslaw.hh
+++ b/dumux/discretization/cellcentered/tpfa/darcyslaw.hh
@@ -170,7 +170,7 @@ class CCTpfaDarcysLaw<TypeTag, /*isNetwork*/ false>
const auto& g = problem.gravityAtPos(scvf.ipGlobal());
//! compute alpha := n^T*K*g
- const auto alpha_inside = vtmv(scvf.unitOuterNormal(), insideVolVars.permeability(), g);
+ const auto alpha_inside = vtmv(scvf.unitOuterNormal(), insideVolVars.permeability(), g)*insideVolVars.extrusionFactor();
Scalar flux = tij*(pInside - pOutside) + rho*scvf.area()*alpha_inside;
@@ -180,7 +180,7 @@ class CCTpfaDarcysLaw<TypeTag, /*isNetwork*/ false>
const auto& outsideScv = fvGeometry.scv(scvf.outsideScvIdx());
const auto outsideK = outsideVolVars.permeability();
const auto outsideTi = computeTpfaTransmissibility(scvf, outsideScv, outsideK, outsideVolVars.extrusionFactor());
- const auto alpha_outside = vtmv(scvf.unitOuterNormal(), outsideK, g);
+ const auto alpha_outside = vtmv(scvf.unitOuterNormal(), outsideK, g)*outsideVolVars.extrusionFactor();
flux += rho*tij/outsideTi*(alpha_inside - alpha_outside);
}
@@ -353,7 +353,9 @@ public:
Scalar sumPTi(tij*pInside);
// add inside gravitational contribution
- sumPTi += rho*scvf.area()*vtmv(scvf.unitOuterNormal(), insideVolVars.permeability(), g);
+ sumPTi += rho*scvf.area()
+ *insideVolVars.extrusionFactor()
+ *vtmv(scvf.unitOuterNormal(), insideVolVars.permeability(), g);
for (unsigned int i = 0; i < scvf.numOutsideScvs(); ++i)
{
@@ -365,14 +367,16 @@ public:
sumPTi += outsideFluxVarsCache.advectionTij()*outsideVolVars.pressure(phaseIdx);
// add outside gravitational contribution
- sumPTi += rho*scvf.area()*vtmv(flippedScvf.unitOuterNormal(), outsideVolVars.permeability(), g);
+ sumPTi += rho*scvf.area()
+ *outsideVolVars.extrusionFactor()
+ *vtmv(flippedScvf.unitOuterNormal(), outsideVolVars.permeability(), g);
}
return sumPTi/sumTi;
}
}();
//! precompute alpha := n^T*K*g
- const auto alpha_inside = vtmv(scvf.unitOuterNormal(), insideVolVars.permeability(), g);
+ const auto alpha_inside = vtmv(scvf.unitOuterNormal(), insideVolVars.permeability(), g)*insideVolVars.extrusionFactor();
Scalar flux = tij*(pInside - pOutside) + scvf.area()*rho*alpha_inside;
@@ -383,7 +387,7 @@ public:
const auto& outsideScvf = fvGeometry.flipScvf(scvf.index());
const auto outsideK = outsideVolVars.permeability();
const auto outsideTi = computeTpfaTransmissibility(outsideScvf, outsideScv, outsideK, outsideVolVars.extrusionFactor());
- const auto alpha_outside = vtmv(outsideScvf.unitOuterNormal(), outsideK, g);
+ const auto alpha_outside = vtmv(outsideScvf.unitOuterNormal(), outsideK, g)*outsideVolVars.extrusionFactor();
flux -= rho*tij/outsideTi*(alpha_inside + alpha_outside);
}
diff --git a/dumux/implicit/CMakeLists.txt b/dumux/implicit/CMakeLists.txt
index 967a666c7516adc91dbd792b1f9ca86c63605406..f5a4ee2b68d5ccd8f0edd84adcbfece39089d5fe 100644
--- a/dumux/implicit/CMakeLists.txt
+++ b/dumux/implicit/CMakeLists.txt
@@ -1,4 +1,3 @@
-add_subdirectory(adaptive)
add_subdirectory(box)
add_subdirectory(cellcentered)
diff --git a/dumux/implicit/adaptive/CMakeLists.txt b/dumux/implicit/adaptive/CMakeLists.txt
deleted file mode 100644
index e3d267f263834c76a2561494782bb246cb46be0e..0000000000000000000000000000000000000000
--- a/dumux/implicit/adaptive/CMakeLists.txt
+++ /dev/null
@@ -1,8 +0,0 @@
-install(FILES
- adaptionhelper.hh
- gridadapt.hh
- gridadaptindicatordefault.hh
- gridadaptinitializationindicator.hh
- gridadaptproperties.hh
- gridadaptpropertydefaults.hh
- DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/implicit/adaptive)
diff --git a/dumux/implicit/adaptive/adaptionhelper.hh b/dumux/implicit/adaptive/adaptionhelper.hh
deleted file mode 100644
index 36ddbb7eec79deb3f05c5bb718fdd4b24df7f679..0000000000000000000000000000000000000000
--- a/dumux/implicit/adaptive/adaptionhelper.hh
+++ /dev/null
@@ -1,135 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-#ifndef DUMUX_IMPLICIT_ADAPTIONHELPER_HH
-#define DUMUX_IMPLICIT_ADAPTIONHELPER_HH
-
-#include <dune/grid/common/gridenums.hh>
-#include <dune/grid/common/rangegenerators.hh>
-#include <dune/grid/utility/persistentcontainer.hh>
-#include <dune/localfunctions/lagrange/pqkfactory.hh>
-
-#include <dumux/common/propertysystem.hh>
-
-/**
- * @file
- * @brief Base class holding the variables for implicit models.
- */
-
-namespace Dumux
-{
-namespace Properties
-{
-NEW_PROP_TAG(GridView);
-NEW_PROP_TAG(ImplicitIsBox);
-NEW_PROP_TAG(Problem);
-}
-
-/*!
- * \brief Base class holding the variables for implicit models.
- */
-template<class TypeTag>
-class ImplicitAdaptionHelper
-{
-private:
- typedef typename GET_PROP_TYPE(TypeTag, Problem) Problem;
- typedef typename GET_PROP_TYPE(TypeTag, GridView) GridView;
- typedef typename GridView::Grid Grid;
-
- enum {
- // Grid and world dimension
- dim = GridView::dimension,
- dimWorld = GridView::dimensionworld,
- };
-
- enum { isBox = GET_PROP_VALUE(TypeTag, ImplicitIsBox) };
- enum { dofCodim = isBox ? dim : 0 };
-
- typedef typename GridView::Traits::template Codim<0>::Entity Element;
- typedef typename GridView::Traits::template Codim<dofCodim>::Entity DofEntity;
-
-public:
- //! Constructs an adaptive helper object
- /**
- * In addition to providing a storage object for cell-centered Methods, this class provides
- * mapping functionality to adapt the grid.
- *
- * @param gridView a DUNE gridview object corresponding to diffusion and transport equation
- */
- ImplicitAdaptionHelper(Problem& problem)
- {}
-
- /*!
- * Store primary variables
- *
- * To reconstruct the solution in father elements, problem properties might
- * need to be accessed.
- * From upper level on downwards, the old solution is stored into an container
- * object, before the grid is adapted. Father elements hold averaged information
- * from the son cells for the case of the sons being coarsened.
- *
- * @param problem The current problem
- */
- void storePrimVars(Problem& problem)
- {
- DUNE_THROW(Dune::InvalidStateException,
- "The problem does not provide "
- "a storePrimVars method.");
- }
-
-
- /*!
- * Reconstruct missing primary variables (where elements are created/deleted)
- *
- * To reconstruct the solution in father elements, problem properties might
- * need to be accessed.
- * Starting from the lowest level, the old solution is mapped on the new grid:
- * Where coarsened, new cells get information from old father element.
- * Where refined, a new solution is reconstructed from the old father cell,
- * and then a new son is created. That is then stored into the general data
- * structure (CellData).
- *
- * @param problem The current problem
- */
- void reconstructPrimVars(Problem& problem)
- {
- DUNE_THROW(Dune::InvalidStateException,
- "The problem does not provide "
- "a reconstructPrimVars method.");
- }
-
-protected:
-
- int dofIndex(const Problem& problem, const DofEntity& entity) const
- {
- return problem.model().dofMapper().index(entity);
- }
-
- int dofIndex(const Problem& problem, const Element& element, const int scvIdx) const
- {
- return problem.model().dofMapper().subIndex(element, scvIdx, dofCodim);
- }
-
- int elementIndex(const Problem& problem, const Element& element) const
- {
- return problem.elementMapper().index(element);
- }
-
-};
-}
-#endif
diff --git a/dumux/implicit/adaptive/gridadapt.hh b/dumux/implicit/adaptive/gridadapt.hh
deleted file mode 100644
index 015369d71731d6ed1a5ecda031f4fb5942c6d83b..0000000000000000000000000000000000000000
--- a/dumux/implicit/adaptive/gridadapt.hh
+++ /dev/null
@@ -1,447 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-/*!
- * \file
- * \brief Base class for h-adaptive implicit models.
- */
-#ifndef DUMUX_IMPLICIT_GRIDADAPT_HH
-#define DUMUX_IMPLICIT_GRIDADAPT_HH
-
-#include "gridadaptproperties.hh"
-#include <unordered_map>
-
-#include <dune/common/exceptions.hh>
-
-#include <dumux/common/propertysystem.hh>
-
-namespace Dumux
-{
-
-namespace Properties
-{
-NEW_PROP_TAG(SolutionVector);
-}
-
-/*!\ingroup ImplicitGridAdapt
- * @brief Standard Module for h-adaptive simulations
- *
- * This class is created by the problem class with the template
- * parameters <TypeTag, true> and provides basic functionality
- * for adaptive methods:
- *
- * A standard implementation adaptGrid() will prepare everything
- * to calculate the next primary variables vector on the new grid.
- */
-template<class TypeTag, bool adaptive>
-class ImplicitGridAdapt
-{
- typedef typename GET_PROP_TYPE(TypeTag, Scalar) Scalar;
- typedef typename GET_PROP_TYPE(TypeTag, Problem) Problem;
- typedef typename GET_PROP_TYPE(TypeTag, GridView) GridView;
-
- typedef typename GridView::Grid Grid;
- typedef typename Grid::LeafGridView LeafGridView;
- typedef typename Grid::template Codim<0>::Entity Element;
-
- typedef typename GET_PROP_TYPE(TypeTag, AdaptionIndicator) AdaptionIndicator;
- typedef typename GET_PROP_TYPE(TypeTag, AdaptionInitializationIndicator) AdaptionInitializationIndicator;
- typedef typename GET_PROP_TYPE(TypeTag, AdaptionHelper) AdaptionHelper;
-
- enum { isBox = GET_PROP_VALUE(TypeTag, ImplicitIsBox) };
-
-public:
- /*!
- * Constructor for h-adaptive simulations (adaptive grids)
- * @param problem The problem
- */
- ImplicitGridAdapt (Problem& problem)
- : problem_(problem),
- adaptionHelper_(problem),
- adaptionIndicator_(problem),
- marked_(0),
- coarsened_(0)
- {
- levelMin_ = GET_PARAM_FROM_GROUP(TypeTag, int, GridAdapt, MinLevel);
- levelMax_ = GET_PARAM_FROM_GROUP(TypeTag, int, GridAdapt, MaxLevel);
- adaptionInterval_ = GET_PARAM_FROM_GROUP(TypeTag, int, GridAdapt, AdaptionInterval);
-
- if (levelMin_ < 0)
- {
- DUNE_THROW(Dune::InvalidStateException, "Coarsening the level 0 entities is not possible! Choose MinLevel >= 0");
- }
- }
-
- /*!
- * @brief Initalization method of the h-adaptive module
- *
- * Prepares the grid for simulation after the initialization of the
- * problem. The applied indicator is selectable via the property
- * AdaptionInitializationIndicator
- */
- void init()
- {
- adaptionIndicator_.init();
-
- if (!GET_PARAM_FROM_GROUP(TypeTag, bool, GridAdapt, EnableInitializationIndicator))
- return;
-
- AdaptionInitializationIndicator adaptionInitIndicator(problem_, adaptionIndicator_);
-
- int maxIter = 2*levelMax_;
- int iter = 0;
- while (iter <= maxIter)
- {
- adaptGrid(adaptionInitIndicator);
-
- if (!wasAdapted())
- {
- break;
- }
-
- int shouldInitialize = adaptionInitIndicator.initializeModel();
- if (problem_.grid().comm().max(shouldInitialize))
- {
- problem_.model().init(problem_);
- }
-
- ++iter;
- }
- }
-
- /*!
- * @brief Standard method to adapt the grid
- *
- * This method is called from IMPETProblem::preTimeStep() if
- * adaptive grids are used in the simulation. It uses the standard
- * indicator (selected by the property AdaptionIndicator) and forwards to
- * with it to the ultimate method adaptGrid(indicator), which
- * uses a standard procedure for adaptivity:
- * 1) Determine the refinement indicator
- * 2) Mark the elements
- * 3) Store primary variables in a map
- * 4) Adapt the grid, adapt variables sizes, update mappers
- * 5) Reconstruct primary variables, regain secondary variables
- */
- void adaptGrid()
- {
- if(levelMax_ > levelMin_)
- adaptGrid(adaptionIndicator_) ;
- }
-
- /*!
- * @brief Returns true if grid cells have been marked for adaption
- */
- bool wasAdapted() const
- {
- int sumMarked = problem_.grid().comm().sum(marked_);
- int sumCoarsened = problem_.grid().comm().sum(coarsened_);
-
- return (sumMarked != 0 || sumCoarsened != 0);
- }
-
- /*!
- * Sets minimum and maximum refinement levels
- *
- * @param levMin minimum level for coarsening
- * @param levMax maximum level for refinement
- */
- void setLevels(int levMin, int levMax)
- {
- if (levMin < 0)
- DUNE_THROW(Dune::InvalidStateException, "Coarsening the level 0 entities is not possible!");
- levelMin_ = levMin;
- levelMax_ = levMax;
- }
-
- /*!
- * @brief Returns maximum refinement level
- *
- * The value is the assign maximum possible level,
- * not the actual maximum level of the grid.
- * @return levelMax_ maximum level for refinement
- */
- int getMaxLevel() const
- {
- return levelMax_;
- }
- /*!
- * @brief Returns minimum refinement level
- *
- * The value is the assign minimum possible level,
- * not the actual minimum level of the grid.
- * @return levelMin_ minimum level for coarsening
- */
- int getMinLevel() const
- {
- return levelMin_;
- }
-
- AdaptionIndicator& adaptionIndicator()
- {
- return adaptionIndicator_;
- }
-
- AdaptionIndicator& adaptionIndicator() const
- {
- return adaptionIndicator_;
- }
-
-private:
- /*!
- * @brief Method to adapt the grid with individual indicator vector
- *
- * @param indicator The refinement indicator that is applied
- *
- * This method is called by an user-defined preTimeStep() of
- * the applied problem and takes a given vector with indicator
- * values.
- *
- * It uses a standard procedure for adaptivity:
- * 1) Determine the refinement indicator
- * 2) Mark the elements
- * 3) Store primary variables in a map
- * 4) Adapt the grid, adapt variables sizes, update mappers
- * 5) Reconstruct primary variables, regain secondary variables
- */
- template<class Indicator>
- void adaptGrid(Indicator& indicator)
- {
- // reset internal counter for marked elements
- marked_ = coarsened_ = 0;
-
- // check for adaption interval: Adapt only at certain time step indices
- if (problem_.timeManager().timeStepIndex() % adaptionInterval_ != 0)
- return;
-
- /**** 1) determine refining parameter if standard is used ***/
- // if not, the indicatorVector and refinement Bounds have to
- // specified by the problem through setIndicator()
- indicator.calculateIndicator();
-
- /**** 2) mark elements according to indicator *********/
- markElements(indicator);
-
- // abort if nothing in grid is marked
- int sumMarked = problem_.grid().comm().sum(marked_);
- int sumCoarsened = problem_.grid().comm().sum(coarsened_);
- if (sumMarked == 0 && sumCoarsened == 0)
- return;
- else
- Dune::dinfo << marked_ << " cells have been marked_ to be refined, "
- << coarsened_ << " to be coarsened." << std::endl;
-
- /**** 2b) Do pre-adaption step *****/
- problem_.grid().preAdapt();
- problem_.preAdapt();
-
- /**** 3) Put primary variables in a map *********/
- adaptionHelper_.storePrimVars(problem_);
-
- /**** 4) Adapt Grid and size of variable vectors *****/
- problem_.grid().adapt();
-
- // update mapper to new cell indices
- problem_.elementMapper().update();
- problem_.vertexMapper().update();
-
- // adapt size of vectors
- problem_.model().adaptVariableSize();
-
- /**** 5) (Re-)construct primary variables to new grid **/
- adaptionHelper_.reconstructPrimVars(problem_);
-
- // delete markers in grid
- problem_.grid().postAdapt();
-
- // call method in problem for potential output etc.
- problem_.postAdapt();
-
- return;
- }
-
- /*!
- * Mark Elements for grid refinement according to applied Indicator
- * @param indicator The refinement indicator that is applied
- */
- template<class Indicator>
- void markElements(Indicator& indicator)
- {
- typedef std::unordered_map<int, int> CoarsenMarkerType;
- CoarsenMarkerType coarsenMarker;
-
- for (const auto& element : elements(problem_.gridView()))
- {
- // only mark non-ghost elements
- if (element.partitionType() != Dune::GhostEntity)
- {
- // refine?
- if (indicator.refine(element) && element.level() < levelMax_)
- {
- problem_.grid().mark( 1, element);
- ++marked_;
-
- // this also refines the neighbor elements
- checkNeighborsRefine_(element);
- }
- if (indicator.coarsen(element) && element.hasFather())
- {
- problem_.grid().mark( -1, element );
- ++coarsened_;
- }
- }
- }
- }
-
- /*!
- * @brief Method ensuring the refinement ratio of 2:1
- *
- * For any given element, a loop over the neighbors checks weather the
- * entities refinement would require that any of the neighbors has
- * to be refined, too.
- * This is done recursively over all levels of the grid.
- *
- * @param element Element of interest that is to be refined
- * @param level level of the refined element: it is at least 1
- * @return true if everything was successful
- */
- bool checkNeighborsRefine_(const Element &element, int level = 1)
- {
- // this also refines the neighbor elements
- for(const auto& intersection : intersections(problem_.gridView(), element))
- {
- if(!intersection.neighbor())
- continue;
-
- auto outside = intersection.outside();
-
- // only mark non-ghost elements
- if (outside.partitionType() == Dune::GhostEntity)
- continue;
-
- if ((outside.level() < levelMax_)
- && (outside.level() < element.level()))
- {
- problem_.grid().mark(1, outside);
- ++marked_;
-
- if(level != levelMax_)
- checkNeighborsRefine_(outside, ++level);
- }
- }
- return true;
- }
-
-
- /*!
- * \brief Enforces a given refine ratio after grid was adapted
- *
- * If the refine ratio is not taken into consideration during
- * marking, then this method ensures a certain ratio.
- *
- * @param maxLevelDelta The maximum level difference (refine ratio)
- * between neighbors.
- */
- void forceRefineRatio(int maxLevelDelta = 1)
- {
- LeafGridView leafGridView = problem_.gridView();
- // delete all existing marks
- problem_.grid().postAdapt();
- bool done;
- do
- {
- // run through all cells
- done=true;
- for (const auto& element : elements(leafGridView))
- {
- // only mark non-ghost elements
- if (element.partitionType() == Dune::GhostEntity)
- continue;
-
- // run through all neighbor-cells (intersections)
- for (const auto& intersection : intersections(leafGridView, element))
- {
- if(!intersection.neighbor())
- continue;
-
- if (element.level() + maxLevelDelta < intersection.outside().level())
- {
- problem_.grid().mark(1, element);
- done=false;
- }
- }
- }
- if (done==false)
- {
- // adapt the grid
- problem_.grid().adapt();
- // delete marks
- problem_.grid().postAdapt();
- }
- }
- while (done!=true);
- }
-
- // private Variables
- Problem& problem_;
- AdaptionHelper adaptionHelper_;
- AdaptionIndicator adaptionIndicator_;
-
- int marked_;
- int coarsened_;
-
- int levelMin_;
- int levelMax_;
-
- int adaptionInterval_;
-};
-
-/*!
- * @brief Class for non-adaptive simulations
- *
- * This class provides empty methods for non-adaptive simulations
- * for compilation reasons. If adaptivity is desired, create the
- * class with template arguments <TypeTag, true> instead.
- */
-template<class TypeTag>
-class ImplicitGridAdapt<TypeTag, false>
-{
- typedef typename GET_PROP_TYPE(TypeTag, Scalar) Scalar;
- typedef typename GET_PROP_TYPE(TypeTag, Problem) Problem;
- typedef typename GET_PROP(TypeTag, SolutionVector) SolutionVector;
-
-public:
- void init()
- {}
- void adaptGrid()
- {}
- bool wasAdapted() const
- { return false; }
- void setLevels(int, int)
- {}
- void setTolerance(int, int)
- {}
- void setIndicator(const SolutionVector&,
- const Scalar&, const Scalar&)
- {}
- ImplicitGridAdapt (Problem& problem)
- {}
-};
-
-}
-#endif /* DUMUX_IMPLICIT_GRIDADAPT_HH */
\ No newline at end of file
diff --git a/dumux/implicit/adaptive/gridadaptindicatordefault.hh b/dumux/implicit/adaptive/gridadaptindicatordefault.hh
deleted file mode 100644
index 77c261e9ca848ef62e5702e35bc187912b6a0dae..0000000000000000000000000000000000000000
--- a/dumux/implicit/adaptive/gridadaptindicatordefault.hh
+++ /dev/null
@@ -1,96 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-#ifndef DUMUX_IMPLICIT_GRIDADAPTINDICATORDEFAULT_HH
-#define DUMUX_IMPLICIT_GRIDADAPTINDICATORDEFAULT_HH
-
-#include <dumux/common/propertysystem.hh>
-
-/**
- * @file
- * @brief Class defining a default indicator for grid adaption
- */
-namespace Dumux
-{
-
-namespace Properties
-{
-NEW_PROP_TAG(GridView);
-NEW_PROP_TAG(Problem);
-}
-
-/*!\ingroup ImplicitGridAdaptIndicator
- * @brief Class defining a default indicator for grid adaption
- *
- *Default implementation
- *
- * \tparam TypeTag The problem TypeTag
- */
-template<class TypeTag>
-class ImplicitGridAdaptIndicatorDefault
-{
-private:
- typedef typename GET_PROP_TYPE(TypeTag, GridView) GridView;
- typedef typename GridView::Traits::template Codim<0>::Entity Element;
- typedef typename GET_PROP_TYPE(TypeTag, Problem) Problem;
-
-public:
- /*! \brief Calculates the indicator used for refinement/coarsening for each grid cell.
- *
- */
- void calculateIndicator()
- {}
-
- /*! \brief Indicator function for marking of grid cells for refinement
- *
- * Returns true if an element should be refined.
- *
- * \param element A grid element
- */
- bool refine(const Element& element)
- {
- return false;
- }
-
- /*! \brief Indicator function for marking of grid cells for coarsening
- *
- * Returns true if an element should be coarsened.
- *
- * \param element A grid element
- */
- bool coarsen(const Element& element)
- {
- return false;
- }
-
- /*! \brief Initializes the adaption indicator class*/
- void init()
- {};
-
- /*! \brief Constructs a GridAdaptionIndicator for initialization of an adaptive grid
- *
- * Default implementation
- *
- * \param problem The problem object
- */
- ImplicitGridAdaptIndicatorDefault(Problem& problem)
- {}
-};
-}
-
-#endif
diff --git a/dumux/implicit/adaptive/gridadaptinitializationindicator.hh b/dumux/implicit/adaptive/gridadaptinitializationindicator.hh
deleted file mode 100644
index b106447be6b16703bc81d256bcdbc208fb543e24..0000000000000000000000000000000000000000
--- a/dumux/implicit/adaptive/gridadaptinitializationindicator.hh
+++ /dev/null
@@ -1,428 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-#ifndef DUMUX_IMPLICIT_GRIDADAPTINITIALIZATIONINDICATOR_HH
-#define DUMUX_IMPLICIT_GRIDADAPTINITIALIZATIONINDICATOR_HH
-
-#include <dune/geometry/type.hh>
-#include <dune/common/dynvector.hh>
-#include "gridadaptproperties.hh"
-
-/**
- * @file
- * @brief Class defining an initialization indicator for grid adaption
- */
-namespace Dumux
-{
-
-namespace Properties
-{
-NEW_PROP_TAG(BoundaryTypes);
-NEW_PROP_TAG(ElementBoundaryTypes);
-NEW_PROP_TAG(ElementVolumeVariables);
-NEW_PROP_TAG(FVElementGeometry);
-NEW_PROP_TAG(ImplicitIsBox);
-NEW_PROP_TAG(PrimaryVariables);
-NEW_PROP_TAG(NumEq);
-}
-
-/*!\ingroup ImplicitGridAdaptInitializationIndicator
- * @brief Class defining an initialization indicator for grid adaption
- *
- * Uses the defined grid adaption indicator and further accounts for sources and boundaries.
- * Only for grid initialization!
- *
- * \tparam TypeTag The problem TypeTag
- */
-template<class TypeTag>
-class ImplicitGridAdaptInitializationIndicator
-{
-private:
- typedef typename GET_PROP_TYPE(TypeTag, Problem) Problem;
- typedef typename GET_PROP_TYPE(TypeTag, GridView) GridView;
- typedef typename GET_PROP_TYPE(TypeTag, Scalar) Scalar;
-
- enum
- {
- dim = GridView::dimension,
- dimWorld = GridView::dimensionworld,
- numEq = GET_PROP_VALUE(TypeTag, NumEq),
- };
-
- typedef typename GridView::Traits::template Codim<0>::Entity Element;
- typedef typename GridView::Traits::template Codim<dim>::Entity Vertex;
- typedef typename GridView::Intersection Intersection;
- typedef typename GridView::Grid::ctype CoordScalar;
- typedef typename Dune::ReferenceElement<CoordScalar, dim> ReferenceElement;
- typedef typename Dune::ReferenceElements<CoordScalar, dim> ReferenceElements;
-
- typedef typename GET_PROP_TYPE(TypeTag, AdaptionIndicator) AdaptionIndicator;
-
- typedef typename GET_PROP_TYPE(TypeTag, PrimaryVariables) PrimaryVariables;
- typedef typename GET_PROP_TYPE(TypeTag, ElementVolumeVariables) ElementVolumeVariables;
- typedef typename GET_PROP_TYPE(TypeTag, FVElementGeometry) FVElementGeometry;
- typedef typename GET_PROP_TYPE(TypeTag, ElementBoundaryTypes) ElementBoundaryTypes;
- typedef typename GET_PROP_TYPE(TypeTag, BoundaryTypes) BoundaryTypes;
-
- enum { isBox = GET_PROP_VALUE(TypeTag, ImplicitIsBox) };
-
- enum { refineCell = 1 };
-
-
-
-
- /*! \brief Search for a source term
- *
- * For every element we check if the element center or the element corners
- * are inside a source zone with source value > 0.
- *
- * \param element A grid element
- */
- bool hasSource_(const Element& element,
- const FVElementGeometry& fvGeometry,
- const ElementVolumeVariables& elemVolVars)
- {
- PrimaryVariables source(0.0);
- for (int scvIdx = 0; scvIdx < fvGeometry.numScv; scvIdx++)
- {
- problem_.solDependentSource(source, element, fvGeometry, scvIdx, elemVolVars);
- if (source.infinity_norm() > eps_)
- return true;
- }
- return false;
- }
-
- /*! \brief Hierarchical search for the value of Neumann boundary condition
- *
- * For every intersection we do virtual refinement until maxAllowedLevel
- * and check which boundary condition is defined on the intersection center. This
- * is necessary as an element can partly have Neumann boundary conditions.
- *
- * \param bcTypes The boundary condition types
- * \param values The value of the boundary condition. Returns the Neumann flux values
- * \param element A grid element
- * \param intersection The boundary intersection
- */
- bool hasRefineBC_(ElementBoundaryTypes &elemBcTypes,
- const Element& element,
- const Intersection& intersection,
- const FVElementGeometry& fvGeometry,
- const ElementVolumeVariables& elemVolVars)
- {
- // Check for boundary conditions
- if(isBox)
- {
- Dune::GeometryType geoType = element.geometry().type();
- const ReferenceElement &refElement = ReferenceElements::general(geoType);
- int fIdx = intersection.indexInInside();
- int numFaceVerts = refElement.size(fIdx, 1, dim);
- for (int faceVertexIdx = 0; faceVertexIdx < numFaceVerts; ++faceVertexIdx)
- {
- int scvIdx = refElement.subEntity(fIdx, 1, faceVertexIdx, dim);
- BoundaryTypes bcTypes = elemBcTypes[scvIdx];
- problemBoundaryTypes_(bcTypes, element.template subEntity<dim>(scvIdx));
- int bfIdx = fvGeometry.boundaryFaceIndex(fIdx, faceVertexIdx);
- for (int i = 0; i < numEq; i++)
- {
- if(bcTypes.isDirichlet(i) && refineAtDirichletBC_)
- return true;
- if(bcTypes.isNeumann(i) && refineAtFluxBC_)
- {
- PrimaryVariables fluxes(0.0);
- problem_.solDependentNeumann(fluxes, element, fvGeometry,
- intersection, scvIdx, bfIdx,
- elemVolVars);
- if (fluxes.infinity_norm() > eps_)
- return true;
- }
- }
- }
-
- }
- else
- {
- BoundaryTypes bcTypes = elemBcTypes[0];
- problem_.boundaryTypes(bcTypes, intersection);
- int bfIdx = intersection.indexInInside();
- for (int i = 0; i < numEq; i++)
- {
- if(bcTypes.isDirichlet(i) && refineAtDirichletBC_)
- return true;
- if(bcTypes.isNeumann(i) && refineAtFluxBC_)
- {
- PrimaryVariables fluxes(0.0);
- problem_.solDependentNeumann(fluxes, element, fvGeometry,
- intersection, 0, bfIdx,
- elemVolVars);
- if (fluxes.infinity_norm() > eps_)
- return true;
- }
- }
- }
- return false;
- }
-
- // only actually call the problem method when it exists
- template <class T = TypeTag>
- void problemBoundaryTypes_(BoundaryTypes& bcTypes,
- const typename std::enable_if<GET_PROP_VALUE(T, ImplicitIsBox), Vertex>::type& v) const
- {
- problem_.boundaryTypes(bcTypes, v);
- }
- template <class T = TypeTag>
- void problemBoundaryTypes_(BoundaryTypes& bcTypes,
- const typename std::enable_if<!GET_PROP_VALUE(T, ImplicitIsBox), Vertex>::type& v) const
- {}
-
-
-public:
- /*! \brief Calculates the indicator used for refinement/coarsening for each grid cell.
- *
- */
- void calculateIndicator()
- {
- if (!enableInitializationIndicator_)
- return;
-
- //First adapt for boundary conditions and sources to get a good initial solution
- if (nextMaxLevel_ == maxAllowedLevel_)
- adaptionIndicator_.calculateIndicator();
-
- // prepare an indicator for refinement
- indicatorVector_.resize(problem_.gridView().size(0));
- indicatorVector_ = 0;
-
- // 1) calculate Indicator -> min, maxvalues
- // loop over all leaf elements
- for (const auto& element : elements(problem_.gridView()))
- {
-
- int globalIdxI = problem_.elementMapper().index(element);
- int level = element.level();
- using std::max;
- using std::min;
- maxLevel_ = max(level, maxLevel_);
-
- if (level < minAllowedLevel_)
- {
- nextMaxLevel_ = min(max(level + 1, nextMaxLevel_), maxAllowedLevel_);
- indicatorVector_[globalIdxI] = refineCell;
- continue;
- }
-
- if (!(refineAtSource_ || refineAtFluxBC_ || refineAtDirichletBC_))
- continue;
-
- // get the fvGeometry and elementVolVars needed for the bc and source interfaces
- FVElementGeometry fvGeometry;
- ElementVolumeVariables elemVolVars;
- fvGeometry.update(problem_.gridView(), element);
- elemVolVars.update(problem_, element, fvGeometry, false /* oldSol? */);
-
- // Check if we have to refine around a source term
- if (indicatorVector_[globalIdxI] != refineCell && refineAtSource_)
- {
- if(hasSource_(element, fvGeometry, elemVolVars))
- {
- nextMaxLevel_ = min(max(level + 1, nextMaxLevel_), maxAllowedLevel_);
- indicatorVector_[globalIdxI] = refineCell;
- continue;
- }
- }
-
- // get the element boundary types
- ElementBoundaryTypes bcTypes;
- bcTypes.update(problem_, element, fvGeometry);
-
- // Check if we have to refine at the boundary
- if (indicatorVector_[globalIdxI] != refineCell && (refineAtDirichletBC_ || refineAtFluxBC_))
- {
- // Calculate the boundary indicator for all boundary intersections
- for (const auto& intersection : intersections(problem_.gridView(), element))
- {
- if (intersection.boundary())
- {
- if(hasRefineBC_(bcTypes, element, intersection, fvGeometry, elemVolVars))
- {
- nextMaxLevel_ = min(max(level + 1, nextMaxLevel_), maxAllowedLevel_);
- indicatorVector_[globalIdxI] = refineCell;
- break;
- }
- }
- }
- }
- }
- }
-
- /*! \brief Indicator function for marking of grid cells for refinement
- *
- * Returns true if an element should be refined.
- *
- * \param element A grid element
- */
- bool refine(const Element& element)
- {
- int idx = problem_.elementMapper().index(element);
-
- if (indicatorVector_[idx] == refineCell)
- return true;
- else if (maxLevel_ == maxAllowedLevel_)
- return adaptionIndicator_.refine(element);
- else
- return false;
- }
-
- /*! \brief Indicator function for marking of grid cells for coarsening
- *
- * Returns true if an element should be coarsened.
- *
- * \param element A grid element
- */
- bool coarsen(const Element& element)
- {
- return false;
- }
-
- int maxLevel()
- {
- return maxLevel_;
- }
-
- /*! \brief Initializes the adaption indicator class */
- void init()
- {};
-
- /*! \brief If the model needs to be initialized after adaption.
- * We always need to initialize since the hasRefineBC_ method needs information from
- an up-to-date model.
- */
- bool initializeModel()
- {
- return true;
- }
-
- /*! \brief Constructs a GridAdaptionIndicator instance
- *
- * This standard indicator is based on the saturation gradient. It checks the local gradient
- * compared to the maximum global gradient. The indicator is compared locally to a
- * refinement/coarsening threshold to decide whether a cell should be marked for refinement
- * or coarsening or should not be adapted.
- *
- * \param problem The problem object
- * \param adaptionIndicator Indicator whether a be adapted
- */
- ImplicitGridAdaptInitializationIndicator(Problem& problem, AdaptionIndicator& adaptionIndicator):
- problem_(problem), adaptionIndicator_(adaptionIndicator), maxLevel_(0), nextMaxLevel_(0), eps_(1e-30)
- {
- minAllowedLevel_ = GET_PARAM_FROM_GROUP(TypeTag, int, GridAdapt, MinLevel);
- maxAllowedLevel_ = GET_PARAM_FROM_GROUP(TypeTag, int, GridAdapt, MaxLevel);
- enableInitializationIndicator_ = GET_PARAM_FROM_GROUP(TypeTag, bool, GridAdapt, EnableInitializationIndicator);
- refineAtDirichletBC_ = GET_PARAM_FROM_GROUP(TypeTag, bool, GridAdapt, RefineAtDirichletBC);
- refineAtFluxBC_ = GET_PARAM_FROM_GROUP(TypeTag, bool, GridAdapt, RefineAtFluxBC);
- refineAtSource_ = GET_PARAM_FROM_GROUP(TypeTag, bool, GridAdapt, RefineAtSource);
-
- if (!refineAtDirichletBC_ && !refineAtFluxBC_ && !refineAtSource_)
- {
- nextMaxLevel_ = maxAllowedLevel_;
- maxLevel_ = maxAllowedLevel_;
- }
- }
-
-private:
- Problem& problem_;
- AdaptionIndicator& adaptionIndicator_;
- Dune::DynamicVector<int> indicatorVector_;
- int maxLevel_;
- int nextMaxLevel_;
- int minAllowedLevel_;
- int maxAllowedLevel_;
- bool enableInitializationIndicator_;
- bool refineAtDirichletBC_;
- bool refineAtFluxBC_;
- bool refineAtSource_;
- Scalar eps_;
-};
-
-
-/*!\ingroup IMPES
- * @brief Class defining a start indicator for grid adaption
- *
- *Default implementation
- *
- * \tparam TypeTag The problem TypeTag
- */
-template<class TypeTag>
-class ImplicitGridAdaptInitializationIndicatorDefault
-{
-private:
- typedef typename GET_PROP_TYPE(TypeTag, GridView) GridView;
- typedef typename GridView::Traits::template Codim<0>::Entity Element;
- typedef typename GET_PROP_TYPE(TypeTag, Problem) Problem;
- typedef typename GET_PROP_TYPE(TypeTag, AdaptionIndicator) AdaptionIndicator;
-
-public:
- /*! \brief Calculates the indicator used for refinement/coarsening for each grid cell.
- *
- */
- void calculateIndicator()
- {}
-
- /*! \brief Indicator function for marking of grid cells for refinement
- *
- * Returns true if an element should be refined.
- *
- * \param element A grid element
- */
- bool refine(const Element& element)
- {
- return false;
- }
-
- /*! \brief Indicator function for marking of grid cells for coarsening
- *
- * Returns true if an element should be coarsened.
- *
- * \param element A grid element
- */
- bool coarsen(const Element& element)
- {
- return false;
- }
-
- bool initializeModel()
- {
- return false;
- }
-
- /*! \brief Initializes the adaption indicator class*/
- void init()
- {};
-
- /*! \brief Constructs a GridAdaptionIndicator for initialization of an adaptive grid
- *
- * Default implementation
- *
- * \param problem The problem object
- * \param adaptionIndicator Indicator whether a be adapted
- */
- ImplicitGridAdaptInitializationIndicatorDefault(Problem& problem, AdaptionIndicator& adaptionIndicator)
- {}
-};
-
-}
-#endif
diff --git a/dumux/implicit/adaptive/gridadaptproperties.hh b/dumux/implicit/adaptive/gridadaptproperties.hh
deleted file mode 100644
index dfa71287d0a1856bf77e8c25c1993202de116ebe..0000000000000000000000000000000000000000
--- a/dumux/implicit/adaptive/gridadaptproperties.hh
+++ /dev/null
@@ -1,87 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-/*!
- * \ingroup ImplicitGridAdaptProperties
- * \ingroup ImplicitGridAdapt
- * \file
- *
- * \brief Defines a type tag and some fundamental properties for
- * linear solvers
- */
-#ifndef DUMUX_IMPLICIT_GRIDADAPT_PROPERTIES_HH
-#define DUMUX_IMPLICIT_GRIDADAPT_PROPERTIES_HH
-
-#include <dumux/common/basicproperties.hh>
-
-namespace Dumux
-{
-namespace Properties
-{
-//! Grid adaption type tag for all sequential models.
-NEW_TYPE_TAG(GridAdapt);
-
-//! Defines if the grid is h-adaptive
-NEW_PROP_TAG(AdaptiveGrid);
-
-//! Class which stores data and reconstructs primary variables for adapted grid
-NEW_PROP_TAG(AdaptionHelper);
-
-//! Class defining the refinement/coarsening indicator
-NEW_PROP_TAG(AdaptionIndicator);
-
-//! Class defining the refinement/coarsening indicator for grid initialization
-NEW_PROP_TAG(AdaptionInitializationIndicator);
-
-//! Switch the use of initial grid adaption on/off
-NEW_PROP_TAG(GridAdaptEnableInitializationIndicator);
-
-//! Mimimum allowed level
-NEW_PROP_TAG(GridAdaptMinLevel);
-
-//! Maximum allowed level
-NEW_PROP_TAG(GridAdaptMaxLevel);
-
-//! Tolerance for refinement
-NEW_PROP_TAG(GridAdaptRefineTolerance);
-
-//! Tolerance for coarsening
-NEW_PROP_TAG(GridAdaptCoarsenTolerance);
-
-//! Tolerance for refinement
-NEW_PROP_TAG(GridAdaptRefineThreshold);
-
-//! Tolerance for coarsening
-NEW_PROP_TAG(GridAdaptCoarsenThreshold);
-
-//! Time step interval for adaption
-NEW_PROP_TAG(GridAdaptAdaptionInterval);
-
-//! Switch for refinement at Dirichlet BC's -> not used by all indicators!
-NEW_PROP_TAG(GridAdaptRefineAtDirichletBC);
-
-//! Switch for refinement at Neumann BC's -> not used by all indicators!
-NEW_PROP_TAG(GridAdaptRefineAtFluxBC);
-
-//! Switch for refinement at sources -> not used by all indicators!
-NEW_PROP_TAG(GridAdaptRefineAtSource);
-
-} // namespace Properties
-} // namespace Dumux
-
-#endif
diff --git a/dumux/implicit/adaptive/gridadaptpropertydefaults.hh b/dumux/implicit/adaptive/gridadaptpropertydefaults.hh
deleted file mode 100644
index 20f52eb7fe2efb25d5804276c9a9dbddff8c077c..0000000000000000000000000000000000000000
--- a/dumux/implicit/adaptive/gridadaptpropertydefaults.hh
+++ /dev/null
@@ -1,70 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-/*!
- * \ingroup ImplicitGridAdaptPropertyDefaults
- * \ingroup ImplicitGridAdapt
- * \file
- *
- * \brief Defines a type tag and some fundamental properties for
- * linear solvers
- */
-#ifndef DUMUX_IMPLICIT_GRIDADAPT_PROPERTY_DEFAULTS_HH
-#define DUMUX_IMPLICIT_GRIDADAPT_PROPERTY_DEFAULTS_HH
-
-#include <dumux/common/basicproperties.hh>
-#include "gridadaptproperties.hh"
-#include "gridadaptindicatordefault.hh"
-#include "gridadaptinitializationindicator.hh"
-#include "adaptionhelper.hh"
-
-namespace Dumux
-{
-namespace Properties
-{
-
-//no adaptive grid
-SET_BOOL_PROP(GridAdapt, AdaptiveGrid, false);
-
-//standard setting
-SET_INT_PROP(GridAdapt, GridAdaptMinLevel, 0);
-SET_INT_PROP(GridAdapt, GridAdaptMaxLevel, 1);
-SET_SCALAR_PROP(GridAdapt, GridAdaptRefineTolerance, 0.05);
-SET_SCALAR_PROP(GridAdapt, GridAdaptCoarsenTolerance, 0.001);
-SET_SCALAR_PROP(GridAdapt, GridAdaptRefineThreshold, 0.0);
-SET_SCALAR_PROP(GridAdapt, GridAdaptCoarsenThreshold, 0.0);
-SET_INT_PROP(GridAdapt, GridAdaptAdaptionInterval, 1);
-//Switch initial grid adaption off per default
-SET_BOOL_PROP(GridAdapt, GridAdaptEnableInitializationIndicator, false);
-
-// Switch of extra refinement strategy at boundaries/sources
-SET_BOOL_PROP(GridAdapt, GridAdaptRefineAtDirichletBC, false);
-SET_BOOL_PROP(GridAdapt, GridAdaptRefineAtFluxBC, false);
-SET_BOOL_PROP(GridAdapt, GridAdaptRefineAtSource, false);
-
-//! Set the default indicator class models for adaption or coarsening
-SET_TYPE_PROP(GridAdapt, AdaptionIndicator, ImplicitGridAdaptIndicatorDefault<TypeTag>);
-//!Set default class for adaption initialization indicator
-SET_TYPE_PROP(GridAdapt, AdaptionInitializationIndicator, ImplicitGridAdaptInitializationIndicatorDefault<TypeTag>);
-//!Set default class for adaption helper
-SET_TYPE_PROP(GridAdapt, AdaptionHelper, ImplicitAdaptionHelper<TypeTag>);
-
-} // namespace Properties
-} // namespace Dumux
-
-#endif
diff --git a/dumux/porousmediumflow/2p/implicit/adaptionhelper.hh b/dumux/porousmediumflow/2p/implicit/adaptionhelper.hh
deleted file mode 100644
index 9f21d22dcd4673d4fe9f29cacd4d3333f9bb4833..0000000000000000000000000000000000000000
--- a/dumux/porousmediumflow/2p/implicit/adaptionhelper.hh
+++ /dev/null
@@ -1,495 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-#ifndef DUMUX_TWOP_ADAPTIONHELPER_HH
-#define DUMUX_TWOP_ADAPTIONHELPER_HH
-
-#include <dumux/common/properties.hh>
-#include <dumux/implicit/adaptive/adaptionhelper.hh>
-
-namespace Dumux {
-
-/*!
- * \brief Base class holding the variables for implicit models.
- */
-template<class TypeTag>
-class TwoPAdaptionHelper : public ImplicitAdaptionHelper<TypeTag>
-{
-private:
- typedef ImplicitAdaptionHelper<TypeTag> ParentType;
- typedef typename GET_PROP_TYPE(TypeTag, Problem) Problem;
- typedef typename GET_PROP_TYPE(TypeTag, GridView) GridView;
- typedef typename GET_PROP_TYPE(TypeTag, Indices) Indices;
- typedef typename GET_PROP_TYPE(TypeTag, PrimaryVariables) PrimaryVariables;
- typedef typename GET_PROP_TYPE(TypeTag, VolumeVariables) VolumeVariables;
- typedef typename GET_PROP_TYPE(TypeTag, FVElementGeometry) FVElementGeometry;
- typedef typename GET_PROP_TYPE(TypeTag, FluidSystem) FluidSystem;
- typedef typename GET_PROP_TYPE(TypeTag, Scalar) Scalar;
-
- enum {
- // Grid and world dimension
- dim = GridView::dimension,
- dimWorld = GridView::dimensionworld,
-
- //indices
- pressureIdx = Indices::pressureIdx,
- saturationIdx = Indices::saturationIdx,
- pwsn = Indices::pwsn,
- pnsw = Indices::pnsw,
- formulation = GET_PROP_VALUE(TypeTag, Formulation),
- wPhaseIdx = Indices::wPhaseIdx,
- nPhaseIdx = Indices::nPhaseIdx
- };
-
- enum { isBox = GET_PROP_VALUE(TypeTag, ImplicitIsBox) };
- enum { dofCodim = isBox ? dim : 0 };
-
- typedef typename GridView::Grid Grid;
- typedef typename Grid::LevelGridView LevelGridView;
- typedef typename GridView::Traits::template Codim<0>::Entity Element;
-
- typedef Dune::FieldVector<Scalar, dimWorld> GlobalPosition;
- typedef typename GridView::ctype CoordScalar;
- typedef Dune::FieldVector<CoordScalar, dim> LocalPosition;
-
- typedef Dune::PQkLocalFiniteElementCache<CoordScalar, Scalar, dim, 1> LocalFiniteElementCache;
- typedef typename LocalFiniteElementCache::FiniteElementType LocalFiniteElement;
-
- struct AdaptedValues
- {
- std::vector<PrimaryVariables> u;
- int count;
- PrimaryVariables associatedMass;
- AdaptedValues(): associatedMass(0)
- {
- count = 0;
- }
- };
-
- typedef Dune::PersistentContainer<Grid, AdaptedValues> PersistentContainer;
- PersistentContainer adaptionMap_;
-
-public:
- //! Constructs an adaption helper object
- /**
- * @param gridView a DUNE gridview object
- */
- TwoPAdaptionHelper(Problem& problem) : ParentType(problem), adaptionMap_(problem.grid(), 0)
- {
- if(FluidSystem::isCompressible(wPhaseIdx) || FluidSystem::isCompressible(nPhaseIdx))
- DUNE_THROW(Dune::InvalidStateException, "Adaptionhelper is only for incompressible fluids mass-conservative!");
- }
-
- /*!
- * Store primary variables
- *
- * To reconstruct the solution in father elements, problem properties might
- * need to be accessed.
- * From upper level on downwards, the old solution is stored into an container
- * object, before the grid is adapted. Father elements hold averaged information
- * from the son cells for the case of the sons being coarsened.
- *
- * @param problem The current problem
- */
- void storePrimVars(Problem& problem)
- {
- adaptionMap_.resize();
-
- // loop over all levels of the grid
- for (int level = problem.grid().maxLevel(); level >= 0; level--)
- {
- //get grid view on level grid
- LevelGridView levelView = problem.grid().levelGridView(level);
-
- for (const auto& element : elements(levelView))
- {
- //get your map entry
- AdaptedValues &adaptedValues = adaptionMap_[element];
-
- // put values in the map
- if (element.isLeaf())
- {
- FVElementGeometry fvGeometry;
- fvGeometry.update(problem.gridView(), element);
-
- for (int scvIdx = 0; scvIdx < fvGeometry.numScv; ++scvIdx)
- {
- // get index
- int dofIdx = this->dofIndex(problem, element, scvIdx);
-
- adaptedValues.u.push_back(problem.model().curSol()[dofIdx]);
-
- VolumeVariables volVars;
- volVars.update(adaptedValues.u[scvIdx],
- problem,
- element,
- fvGeometry,
- scvIdx,
- false);
-
- Scalar volume = fvGeometry.subContVol[scvIdx].volume;
-
- adaptedValues.associatedMass[nPhaseIdx] += volume*volVars.density(nPhaseIdx)
- * volVars.porosity() * volVars.saturation(nPhaseIdx);
- adaptedValues.associatedMass[wPhaseIdx] += volume*volVars.density(wPhaseIdx)
- * volVars.porosity() * volVars.saturation(wPhaseIdx);
- }
- adaptedValues.count = 1;
- }
- //Average in father
- if (element.level() > 0)
- {
- if(!element.hasFather())
- DUNE_THROW(Dune::InvalidStateException, "Element on level > 0 has no father element!");
-
- AdaptedValues& adaptedValuesFather = adaptionMap_[element.father()];
- //For some grids the father element is identical to the son element.
- //For that case averaging is not necessary.
- if(&adaptedValues != &adaptedValuesFather)
- {
- adaptedValuesFather.count += 1;
- storeAdaptionValues(adaptedValues, adaptedValuesFather);
- }
- }
-
- if(isBox && !element.isLeaf())
- {
- FVElementGeometry fvGeometry;
- fvGeometry.update(problem.gridView(), element);
-
- for (int scvIdx = 0; scvIdx < fvGeometry.numScv; ++scvIdx)
- {
- int dofIdx = this->dofIndex(problem, element, scvIdx);
-
- adaptedValues.u.push_back(problem.model().curSol()[dofIdx]);
- }
- }
-
- }
- }
- }
-
- /*!
- * Reconstruct missing primary variables (where elements are created/deleted)
- *
- * To reconstruct the solution in father elements, problem properties might
- * need to be accessed.
- * Starting from the lowest level, the old solution is mapped on the new grid:
- * Where coarsened, new cells get information from old father element.
- * Where refined, a new solution is reconstructed from the old father cell,
- * and then a new son is created. That is then stored into the general data
- * structure (CellData).
- *
- * @param problem The current problem
- */
- void reconstructPrimVars(Problem& problem)
- {
- adaptionMap_.resize();
- //vectors storing the mass associated with each vertex, when using the box method
- std::vector<Scalar> massCoeff;
- std::vector<Scalar> associatedMass;
-
- if(isBox)
- {
- massCoeff.resize(problem.model().numDofs(),0.0);
- associatedMass.resize(problem.model().numDofs(),0.0);
- }
-
- for (int level = 0; level <= problem.grid().maxLevel(); level++)
- {
- LevelGridView levelView = problem.grid().levelGridView(level);
-
- for (const auto& element : elements(levelView))
- {
- // only treat non-ghosts, ghost data is communicated afterwards
- if (element.partitionType() == Dune::GhostEntity)
- continue;
-
- if (!element.isNew() || element.level() == 0)
- {
- //entry is in map, write in leaf
- if (element.isLeaf())
- {
- AdaptedValues &adaptedValues = adaptionMap_[element];
-
- FVElementGeometry fvGeometry;
- fvGeometry.update(problem.gridView(), element);
-
- for (int scvIdx = 0; scvIdx < fvGeometry.numScv; ++scvIdx)
- {
- // get index
- int dofIdx = this->dofIndex(problem, element, scvIdx);
-
- VolumeVariables volVars;
- volVars.update(adaptedValues.u[scvIdx],
- problem,
- element,
- fvGeometry,
- scvIdx,
- false);
-
- Scalar volumeElement = fvGeometry.elementVolume;
-
- this->setAdaptionValues(adaptedValues, problem.model().curSol()[dofIdx],scvIdx);
-
- if (int(formulation) == pwsn)
- {
- problem.model().curSol()[dofIdx][saturationIdx] = adaptedValues.associatedMass[nPhaseIdx];
- problem.model().curSol()[dofIdx][saturationIdx] /= volumeElement * volVars.density(nPhaseIdx) * volVars.porosity();
- }
- else if (int(formulation) == pnsw)
- {
- problem.model().curSol()[dofIdx][saturationIdx] = adaptedValues.associatedMass[wPhaseIdx];
- problem.model().curSol()[dofIdx][saturationIdx] /= volumeElement * volVars.density(wPhaseIdx) * volVars.porosity();
- }
-
- if(isBox)
- {
- Scalar volume = fvGeometry.subContVol[scvIdx].volume;
- if (int(formulation) == pwsn)
- {
- massCoeff[dofIdx] += volume * volVars.density(nPhaseIdx) * volVars.porosity();
- associatedMass[dofIdx] += volume/volumeElement*adaptedValues.associatedMass[nPhaseIdx];
- }
- else if (int(formulation) == pnsw)
- {
- massCoeff[dofIdx] += volume * volVars.density(wPhaseIdx) * volVars.porosity();
- associatedMass[dofIdx] += volume/volumeElement*adaptedValues.associatedMass[wPhaseIdx];
- }
- }
-
- }
-
- }
- }
- else
- {
- // value is not in map, interpolate from father element
- if (element.hasFather())
- {
- auto eFather = element.father();
- while(eFather.isNew() && eFather.level() > 0)
- eFather = eFather.father();
-
- Scalar massFather = 0.0;
-
- if(!isBox)
- {
- AdaptedValues& adaptedValuesFather = adaptionMap_[eFather];
-
- if (int(formulation) == pwsn)
- {
- massFather = adaptedValuesFather.associatedMass[nPhaseIdx];
- }
- else if (int(formulation) == pnsw)
- {
- massFather = adaptedValuesFather.associatedMass[wPhaseIdx];
- }
-
- // access new son
- AdaptedValues& adaptedValues = adaptionMap_[element];
- adaptedValues.count = 1;
-
- FVElementGeometry fvGeometry;
- fvGeometry.update(problem.gridView(), element);
-
- adaptedValues.u.push_back(adaptedValuesFather.u[0]);
-
- VolumeVariables volVars;
- volVars.update(adaptedValues.u[0],
- problem,
- element,
- fvGeometry,
- /*scvIdx=*/0,
- false);
-
- Scalar volume = fvGeometry.subContVol[0].volume;
- Scalar massCoeffSon = 0.0;
- if (int(formulation) == pwsn)
- {
- massCoeffSon = volume * volVars.density(nPhaseIdx) * volVars.porosity();
- }
- else if (int(formulation) == pnsw)
- {
- massCoeffSon = volume * volVars.density(wPhaseIdx) * volVars.porosity();
- }
- Scalar volumeFather = eFather.geometry().volume();
- adaptedValues.u[0][saturationIdx] = (volume/volumeFather*massFather)/massCoeffSon;
-
- // if we are on leaf, store reconstructed values of son in CellData object
- if (element.isLeaf())
- {
- // access new CellData object
- int newIdxI = this->elementIndex(problem, element);
-
- this->setAdaptionValues(adaptedValues, problem.model().curSol()[newIdxI],0);
- }
- }
- else
- {
- AdaptedValues& adaptedValuesFather = adaptionMap_[eFather];
- // access new son
- AdaptedValues& adaptedValues = adaptionMap_[element];
- adaptedValues.u.clear();
- adaptedValues.count = 1;
-
- const auto geometryI = element.geometry();
-
- FVElementGeometry fvGeometry;
- fvGeometry.update(problem.gridView(), element);
-
- for (int scvIdx = 0; scvIdx < fvGeometry.numScv; ++scvIdx)
- {
- auto subEntity = element.template subEntity <dofCodim>(scvIdx);
-
- LocalPosition dofCenterPos = geometryI.local(subEntity.geometry().center());
- const LocalFiniteElementCache feCache;
- Dune::GeometryType geomType = eFather.geometry().type();
-
- // Interpolate values from father element by using ansatz functions
- const LocalFiniteElement &localFiniteElement = feCache.get(geomType);
- std::vector<Dune::FieldVector<Scalar, 1> > shapeVal;
- localFiniteElement.localBasis().evaluateFunction(dofCenterPos, shapeVal);
- PrimaryVariables u(0);
- for (int j = 0; j < shapeVal.size(); ++j)
- {
- u.axpy(shapeVal[j], adaptedValuesFather.u[j]);
- }
-
- adaptedValues.u.push_back(u);
- adaptedValues.count = 1;
-
- if (element.isLeaf())
- {
- VolumeVariables volVars;
- volVars.update(adaptedValues.u[scvIdx],
- problem,
- element,
- fvGeometry,
- scvIdx,
- false);
-
- Scalar volume = fvGeometry.subContVol[scvIdx].volume;
- Scalar volumeFather = eFather.geometry().volume();
-
- int dofIdx = this->dofIndex(problem, element, scvIdx);
- if (int(formulation) == pwsn)
- {
- massCoeff[dofIdx] += volume * volVars.density(nPhaseIdx) * volVars.porosity();
- associatedMass[dofIdx] += volume/volumeFather*adaptedValuesFather.associatedMass[nPhaseIdx];
- }
- else if (int(formulation) == pnsw)
- {
- massCoeff[dofIdx] += volume * volVars.density(wPhaseIdx) * volVars.porosity();
- associatedMass[dofIdx] += volume/volumeFather*adaptedValuesFather.associatedMass[wPhaseIdx];
- }
-
- this->setAdaptionValues(adaptedValues, problem.model().curSol()[dofIdx],scvIdx);
- }
-
- }
- }
- }
- else
- {
- DUNE_THROW(Dune::InvalidStateException, "Element is new but has no father element!");
- }
-
- }
- }
-
- }
-
- if(isBox)
- {
- for(int dofIdx = 0; dofIdx < problem.model().numDofs(); dofIdx++)
- {
- problem.model().curSol()[dofIdx][saturationIdx] = associatedMass[dofIdx]/massCoeff[dofIdx];
- }
- }
-
- // reset entries in restrictionmap
- adaptionMap_.resize( typename PersistentContainer::Value() );
- adaptionMap_.shrinkToFit();
- adaptionMap_.fill( typename PersistentContainer::Value() );
-
-//#if HAVE_MPI
-// // communicate ghost data
-// typedef typename GET_PROP(TypeTag, SolutionTypes) SolutionTypes;
-// typedef typename SolutionTypes::ElementMapper ElementMapper;
-// typedef VectorExchange<ElementMapper, std::vector<CellData> > DataHandle;
-// DataHandle dataHandle(problem.elementMapper(), this->cellDataGlobal());
-// problem.gridView().template communicate<DataHandle>(dataHandle,
-// Dune::InteriorBorder_All_Interface,
-// Dune::ForwardCommunication);
-//#endif
- }
-
- //! Stores sons entries into father element for averaging
- /**
- * Sum up the adaptedValues (sons values) into father element. We store from leaf
- * upwards, so sons are stored first, then cells on the next leaf (=fathers)
- * can be averaged.
- *
- * \param adaptedValues Container for model-specific values to be adapted
- * \param adaptedValuesFather Values to be adapted of father cell
- */
- static void storeAdaptionValues(AdaptedValues& adaptedValues,
- AdaptedValues& adaptedValuesFather)
- {
- if(!isBox)
- {
- if(adaptedValuesFather.u.size() == 0)
- adaptedValuesFather.u.resize(1);
-
- adaptedValuesFather.u[0] += adaptedValues.u[0];
- adaptedValuesFather.u[0] /= adaptedValues.count;
- adaptedValuesFather.associatedMass += adaptedValues.associatedMass;
- }
- else
- {
- adaptedValuesFather.associatedMass += adaptedValues.associatedMass;
- }
- }
- //! Set adapted values in CellData
- /**
- * This methods stores reconstructed values into the cellData object, by
- * this setting a newly mapped solution to the storage container of the
- * sequential models.
- *
- * \param adaptedValues Container for model-specific values to be adapted
- * \param u The variables to be stored
- */
- static void setAdaptionValues(AdaptedValues& adaptedValues, PrimaryVariables& u, int scvIdx)
- {
- PrimaryVariables uNew(0);
- if(!isBox)
- {
- uNew = adaptedValues.u[scvIdx];
- uNew /= adaptedValues.count;
- }
- else
- {
- uNew = adaptedValues.u[scvIdx];
- }
-
- u = uNew;
- }
-};
-}
-#endif
diff --git a/dumux/porousmediumflow/2p/implicit/gridadaptindicator.hh b/dumux/porousmediumflow/2p/implicit/gridadaptindicator.hh
index 5d7ac8b70328698053239f8a9959d7e43553f8d8..bb2f8f945f83b19dce51385fd83b51166d810235 100644
--- a/dumux/porousmediumflow/2p/implicit/gridadaptindicator.hh
+++ b/dumux/porousmediumflow/2p/implicit/gridadaptindicator.hh
@@ -16,170 +16,165 @@
* You should have received a copy of the GNU General Public License *
* along with this program. If not, see <http://www.gnu.org/licenses/>. *
*****************************************************************************/
-#ifndef DUMUX_IMPLICIT_GRIDADAPTINDICATOR2P_HH
-#define DUMUX_IMPLICIT_GRIDADAPTINDICATOR2P_HH
+#ifndef DUMUX_TWOP_ADAPTION_INDICATOR_HH
+#define DUMUX_TWOP_ADAPTION_INDICATOR_HH
+
+#include <dune/common/exceptions.hh>
#include <dumux/common/properties.hh>
-#include <dune/localfunctions/lagrange/pqkfactory.hh>
-//#include <dumux/linear/vectorexchange.hh>
+#include <dumux/discretization/evalsolution.hh>
/**
- * @file
- * @brief Class defining a standard, saturation dependent indicator for grid adaptation
+ * \file
+ * \brief Class defining a standard, saturation dependent indicator for grid adaptation
*/
namespace Dumux
{
-/*!\ingroup IMPES
- * @brief Class defining a standard, saturation dependent indicator for grid adaptation
- *
- * \tparam TypeTag The problem TypeTag
+
+/*!\ingroup TwoPModel
+ * \brief Class defining a standard, saturation dependent indicator for grid adaptation
*/
template<class TypeTag>
-class TwoPImplicitGridAdaptIndicator
+class TwoPGridAdaptIndicator
{
-private:
- typedef typename GET_PROP_TYPE(TypeTag, Problem) Problem;
- typedef typename GET_PROP_TYPE(TypeTag, GridView) GridView;
- typedef typename GET_PROP_TYPE(TypeTag, Scalar) Scalar;
- typedef typename GridView::Traits::template Codim<0>::Entity Element;
+ using FVGridGeometry = typename GET_PROP_TYPE(TypeTag, FVGridGeometry);
+ using GridView = typename GET_PROP_TYPE(TypeTag, GridView);
+ using Element = typename GridView::template Codim<0>::Entity;
+ using Scalar = typename GET_PROP_TYPE(TypeTag, Scalar);
+ using Indices = typename GET_PROP_TYPE(TypeTag, Indices);
+ using SolutionVector = typename GET_PROP_TYPE(TypeTag, SolutionVector);
+ using ElementSolution = typename GET_PROP_TYPE(TypeTag, ElementSolutionVector);
- typedef typename GET_PROP_TYPE(TypeTag, Indices) Indices;
+ enum { saturationIdx = Indices::saturationIdx };
- enum
- {
- saturationIdx = Indices::saturationIdx,
- pressureIdx = Indices::pressureIdx
- };
- enum
+public:
+ /*! \brief The Constructor
+ *
+ * \param fvGridGeometry The finite volume grid geometry
+ *
+ * Note: refineBound_, coarsenBound_ & maxSaturationDelta_ are chosen
+ * in a way such that the indicator returns false for all elements
+ * before having been calculated.
+ */
+ TwoPGridAdaptIndicator(std::shared_ptr<const FVGridGeometry> fvGridGeometry)
+ : fvGridGeometry_(fvGridGeometry)
+ , refineBound_(std::numeric_limits<Scalar>::max())
+ , coarsenBound_(std::numeric_limits<Scalar>::lowest())
+ , maxSaturationDelta_(fvGridGeometry_->gridView().size(0), 0.0)
+ , minLevel_(getParamFromGroup<std::size_t>(GET_PROP_VALUE(TypeTag, ModelParameterGroup), "Adaptive.MinLevel", 0))
+ , maxLevel_(getParamFromGroup<std::size_t>(GET_PROP_VALUE(TypeTag, ModelParameterGroup), "Adaptive.MaxLevel", 0))
+ {}
+
+ /*!
+ * \brief Function to set the minimum allowed level.
+ *
+ */
+ void setMinLevel(std::size_t minLevel)
{
- wPhaseIdx = Indices::wPhaseIdx,
- nPhaseIdx = Indices::nPhaseIdx
- };
-
- enum {
- // Grid and world dimension
- dim = GridView::dimension,
- dimWorld = GridView::dimensionworld
- };
-
- enum { isBox = GET_PROP_VALUE(TypeTag, ImplicitIsBox) };
- enum { dofCodim = isBox ? dim : 0 };
+ minLevel_ = minLevel;
+ }
- typedef Dune::FieldVector<Scalar, dimWorld> GlobalPosition;
- typedef typename GridView::ctype CoordScalar;
+ /*!
+ * \brief Function to set the maximum allowed level.
+ *
+ */
+ void setMaxLevel(std::size_t maxLevel)
+ {
+ maxLevel_ = maxLevel;
+ }
- typedef Dune::PQkLocalFiniteElementCache<CoordScalar, Scalar, dim, 1> LocalFiniteElementCache;
- typedef typename LocalFiniteElementCache::FiniteElementType LocalFiniteElement;
+ /*!
+ * \brief Function to set the minumum/maximum allowed levels.
+ *
+ */
+ void setLevels(std::size_t minLevel, std::size_t maxLevel)
+ {
+ minLevel_ = minLevel;
+ maxLevel_ = maxLevel;
+ }
-public:
- /*! \brief Calculates the indicator used for refinement/coarsening for each grid cell.
+ /*!
+ * \brief Calculates the indicator used for refinement/coarsening for each grid cell.
*
- * This standard indicator is based on the saturation gradient.
+ * This standard two-phase indicator is based on the saturation gradient.
*/
- void calculateIndicator()
+ void calculate(const SolutionVector& sol,
+ Scalar refineTol = 0.05,
+ Scalar coarsenTol = 0.001)
{
- // prepare an indicator for refinement
- if(indicatorVector_.size() != problem_.gridView().size(0))
- {
- indicatorVector_.resize(problem_.gridView().size(0));
- }
- indicatorVector_ = -1e100;
+ //! reset the indicator to a state that returns false for all elements
+ refineBound_ = std::numeric_limits<Scalar>::max();
+ coarsenBound_ = std::numeric_limits<Scalar>::lowest();
+ maxSaturationDelta_.assign(fvGridGeometry_->gridView().size(0), 0.0);
- Scalar globalMax = -1e100;
- Scalar globalMin = 1e100;
+ //! maxLevel_ must be higher than minLevel_ to allow for refinement
+ if (minLevel_ >= maxLevel_)
+ return;
- // 1) calculate Indicator -> min, maxvalues
- // loop over all leaf-elements
- for (const auto& element : elements(problem_.gridView()))
- {
- // calculate minimum and maximum saturation
- // index of the current leaf-elements
- int globalIdxI = problem_.elementMapper().index(element);
+ //! check for inadmissible tolerance combination
+ if (coarsenTol > refineTol)
+ DUNE_THROW(Dune::InvalidStateException, "Refine tolerance must be higher than coarsen tolerance");
- Scalar satI = 0.0;
+ //! variables to hold the max/mon saturation values on the leaf
+ Scalar globalMax = std::numeric_limits<Scalar>::lowest();
+ Scalar globalMin = std::numeric_limits<Scalar>::max();
- if(!isBox)
- satI = problem_.model().curSol()[globalIdxI][saturationIdx];
- else
- {
- const LocalFiniteElementCache feCache;
- const auto geometryI = element.geometry();
- Dune::GeometryType geomType = geometryI.type();
-
- GlobalPosition centerI = geometryI.local(geometryI.center());
- const LocalFiniteElement &localFiniteElement = feCache.get(geomType);
- std::vector<Dune::FieldVector<Scalar, 1> > shapeVal;
- localFiniteElement.localBasis().evaluateFunction(centerI, shapeVal);
-
- for (int i = 0; i < shapeVal.size(); ++i)
- {
- int dofIdxGlobal = problem_.model().dofMapper().subIndex(element, i, dofCodim);
- satI += shapeVal[i]*problem_.model().curSol()[dofIdxGlobal][saturationIdx];
- }
- }
+ //! Calculate minimum and maximum saturation
+ for (const auto& element : elements(fvGridGeometry_->gridView()))
+ {
+ //! index of the current leaf-element
+ const auto globalIdxI = fvGridGeometry_->elementMapper().index(element);
+ //! obtain the saturation at the center of the element
+ const auto geometry = element.geometry();
+ const ElementSolution elemSol(element, sol, *fvGridGeometry_);
+ const Scalar satI = evalSolution(element, geometry, *fvGridGeometry_, elemSol, geometry.center())[saturationIdx];
+
+ //! maybe update the global minimum/maximum
using std::min;
using std::max;
globalMin = min(satI, globalMin);
globalMax = max(satI, globalMax);
- // calculate refinement indicator in all cells
- for (const auto& intersection : intersections(problem_.gridView(), element))
+ //! calculate maximum delta in saturation for this cell
+ for (const auto& intersection : intersections(fvGridGeometry_->gridView(), element))
{
- // Only consider internal intersections
+ //! Only consider internal intersections
if (intersection.neighbor())
{
- // Access neighbor
- auto outside = intersection.outside();
- int globalIdxJ = problem_.elementMapper().index(outside);
+ //! Access neighbor
+ const auto outside = intersection.outside();
+ const auto globalIdxJ = fvGridGeometry_->elementMapper().index(outside);
- // Visit intersection only once
+ //! Visit intersection only once
if (element.level() > outside.level() || (element.level() == outside.level() && globalIdxI < globalIdxJ))
{
- Scalar satJ = 0.0;
-
- if(!isBox)
- satJ = problem_.model().curSol()[globalIdxJ][saturationIdx];
- else
- {
- const LocalFiniteElementCache feCache;
- const auto geometryJ = outside.geometry();
- Dune::GeometryType geomType = geometryJ.type();
-
- GlobalPosition centerJ = geometryJ.local(geometryJ.center());
- const LocalFiniteElement &localFiniteElement = feCache.get(geomType);
- std::vector<Dune::FieldVector<Scalar, 1> > shapeVal;
- localFiniteElement.localBasis().evaluateFunction(centerJ, shapeVal);
-
- for (int i = 0; i < shapeVal.size(); ++i)
- {
- int dofIdxGlobal = problem_.model().dofMapper().subIndex(outside, i, dofCodim);
-
- satJ += shapeVal[i]*problem_.model().curSol()[dofIdxGlobal][saturationIdx];
- }
- }
-
-
+ //! obtain saturation in the neighbor
+ const auto outsideGeometry = outside.geometry();
+ const ElementSolution elemSolJ(outside, sol, *fvGridGeometry_);
+ const Scalar satJ = evalSolution(outside, outsideGeometry, *fvGridGeometry_, elemSolJ, outsideGeometry.center())[saturationIdx];
using std::abs;
Scalar localdelta = abs(satI - satJ);
- using std::max;
- indicatorVector_[globalIdxI][0] = max(indicatorVector_[globalIdxI][0], localdelta);
- indicatorVector_[globalIdxJ][0] = max(indicatorVector_[globalIdxJ][0], localdelta);
+ maxSaturationDelta_[globalIdxI] = max(maxSaturationDelta_[globalIdxI], localdelta);
+ maxSaturationDelta_[globalIdxJ] = max(maxSaturationDelta_[globalIdxJ], localdelta);
}
}
}
}
- Scalar globaldelta = globalMax - globalMin;
+ //! compute the maximum delta in saturation
+ const auto globalDelta = globalMax - globalMin;
- refineBound_ = refinetol_*globaldelta;
- coarsenBound_ = coarsentol_*globaldelta;
+ //! compute the refinement/coarsening bounds
+ refineBound_ = refineTol*globalDelta;
+ coarsenBound_ = coarsenTol*globalDelta;
+// TODO: fix adaptive simulations in parallel
//#if HAVE_MPI
// // communicate updated values
// typedef VectorExchange<ElementMapper, ScalarSolutionType> DataHandle;
-// DataHandle dataHandle(problem_.elementMapper(), indicatorVector_);
+// DataHandle dataHandle(problem_.elementMapper(), maxSaturationDelta_);
// problem_.gridView().template communicate<DataHandle>(dataHandle,
// Dune::InteriorBorder_All_Interface,
// Dune::ForwardCommunication);
@@ -189,62 +184,84 @@ public:
// coarsenBound_ = problem_.gridView().comm().max(coarsenBound_);
//
//#endif
+
+ //! check if neighbors have to be refined too
+ for (const auto& element : elements(fvGridGeometry_->gridView(), Dune::Partitions::interior))
+ if (this->operator()(element) > 0)
+ checkNeighborsRefine_(element);
}
- /*! \brief Indicator function for marking of grid cells for refinement
+ /*! \brief function call operator to return mark
*
- * Returns true if an element should be refined.
+ * \return 1 if an element should be refined
+ * -1 if an element should be coarsened
+ * 0 otherwise
*
* \param element A grid element
*/
- bool refine(const Element& element)
+ int operator() (const Element& element) const
{
- return (indicatorVector_[problem_.elementMapper().index(element)] > refineBound_);
+ if (element.hasFather()
+ && maxSaturationDelta_[fvGridGeometry_->elementMapper().index(element)] < coarsenBound_)
+ {
+ return -1;
+ }
+ else if (element.level() < maxLevel_
+ && maxSaturationDelta_[fvGridGeometry_->elementMapper().index(element)] > refineBound_)
+ {
+ return 1;
+ }
+ else
+ return 0;
}
- /*! \brief Indicator function for marking of grid cells for coarsening
+private:
+ /*!
+ * \brief Method ensuring the refinement ratio of 2:1
*
- * Returns true if an element should be coarsened.
+ * For any given element, a loop over the neighbors checks if the
+ * entities refinement would require that any of the neighbors has
+ * to be refined, too. This is done recursively over all levels of the grid.
*
- * \param element A grid element
+ * \param element Element of interest that is to be refined
+ * \param level level of the refined element: it is at least 1
+ * \return true if everything was successful
*/
- bool coarsen(const Element& element)
+ bool checkNeighborsRefine_(const Element &element, std::size_t level = 1)
{
- return (indicatorVector_[problem_.elementMapper().index(element)] < coarsenBound_);
- }
+ for(const auto& intersection : intersections(fvGridGeometry_->gridView(), element))
+ {
+ if(!intersection.neighbor())
+ continue;
- /*! \brief Initializes the adaptation indicator class*/
- void init()
- {
- refineBound_ = 0.;
- coarsenBound_ = 0.;
- indicatorVector_.resize(problem_.gridView().size(0));
- };
+ // obtain outside element
+ const auto outside = intersection.outside();
- /*! @brief Constructs a GridAdaptIndicator instance
- *
- * This standard indicator is based on the saturation gradient.
- * It checks the local gradient compared to the maximum global gradient.
- * The indicator is compared locally to a refinement/coarsening threshold to decide whether
- * a cell should be marked for refinement or coarsening or should not be adapted.
- *
- * \param problem The problem object
- */
- TwoPImplicitGridAdaptIndicator(Problem& problem):
- problem_(problem)
- {
- refinetol_ = GET_PARAM_FROM_GROUP(TypeTag, Scalar, GridAdapt, RefineTolerance);
- coarsentol_ = GET_PARAM_FROM_GROUP(TypeTag, Scalar, GridAdapt, CoarsenTolerance);
+ // only mark non-ghost elements
+ if (outside.partitionType() == Dune::GhostEntity)
+ continue;
+
+ if (outside.level() < maxLevel_ && outside.level() < element.level())
+ {
+ // ensure refinement for outside element
+ maxSaturationDelta_[fvGridGeometry_->elementMapper().index(outside)] = std::numeric_limits<Scalar>::max();
+ if(level < maxLevel_)
+ checkNeighborsRefine_(outside, ++level);
+ }
+ }
+
+ return true;
}
-protected:
- Problem& problem_;
- Scalar refinetol_;
- Scalar coarsentol_;
+ std::shared_ptr<const FVGridGeometry> fvGridGeometry_;
+
Scalar refineBound_;
Scalar coarsenBound_;
- Dune::BlockVector<Dune::FieldVector<Scalar, 1> > indicatorVector_;
+ std::vector< Scalar > maxSaturationDelta_;
+ std::size_t minLevel_;
+ std::size_t maxLevel_;
};
-}
-#endif
+} // end namespace Dumux
+
+#endif /* DUMUX_TWOP_ADAPTION_INDICATOR_HH */
diff --git a/dumux/porousmediumflow/2p/implicit/griddatatransfer.hh b/dumux/porousmediumflow/2p/implicit/griddatatransfer.hh
new file mode 100644
index 0000000000000000000000000000000000000000..ada149cb09b6722755a6033c83dc4fc71eb48e50
--- /dev/null
+++ b/dumux/porousmediumflow/2p/implicit/griddatatransfer.hh
@@ -0,0 +1,422 @@
+// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
+// vi: set et ts=4 sw=4 sts=4:
+/*****************************************************************************
+ * See the file COPYING for full copying permissions. *
+ * *
+ * This program is free software: you can redistribute it and/or modify *
+ * it under the terms of the GNU General Public License as published by *
+ * the Free Software Foundation, either version 2 of the License, or *
+ * (at your option) any later version. *
+ * *
+ * This program is distributed in the hope that it will be useful, *
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
+ * GNU General Public License for more details. *
+ * *
+ * You should have received a copy of the GNU General Public License *
+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
+ *****************************************************************************/
+#ifndef DUMUX_TWOP_GRIDDATA_TRANSFER_HH
+#define DUMUX_TWOP_GRIDDATA_TRANSFER_HH
+
+#include <dune/grid/utility/persistentcontainer.hh>
+#include <dumux/common/properties.hh>
+#include <dumux/discretization/methods.hh>
+#include <dumux/adaptive/griddatatransfer.hh>
+
+namespace Dumux {
+
+/*!
+ * \brief Class performing the transfer of data on a grid from before to after adaptation.
+ */
+template<class TypeTag>
+class TwoPGridDataTransfer : public GridDataTransfer
+{
+ using Grid = typename GET_PROP_TYPE(TypeTag, Grid);
+ using Scalar = typename GET_PROP_TYPE(TypeTag, Scalar);
+ using Problem = typename GET_PROP_TYPE(TypeTag, Problem);
+ using Indices = typename GET_PROP_TYPE(TypeTag, Indices);
+ using FVGridGeometry = typename GET_PROP_TYPE(TypeTag, FVGridGeometry);
+ using SubControlVolume = typename GET_PROP_TYPE(TypeTag, SubControlVolume);
+ using GridVariables = typename GET_PROP_TYPE(TypeTag, GridVariables);
+ using VolumeVariables = typename GET_PROP_TYPE(TypeTag, VolumeVariables);
+ using PrimaryVariables = typename GET_PROP_TYPE(TypeTag, PrimaryVariables);
+ using SolutionVector = typename GET_PROP_TYPE(TypeTag, SolutionVector);
+ using ElementSolution = typename GET_PROP_TYPE(TypeTag, ElementSolutionVector);
+ using FluidSystem = typename GET_PROP_TYPE(TypeTag, FluidSystem);
+
+ struct AdaptedValues
+ {
+ AdaptedValues() : associatedMass(0.0) {}
+ ElementSolution u;
+ int count = 0;
+ PrimaryVariables associatedMass;
+ bool wasLeaf = false;
+ };
+
+ using PersistentContainer = Dune::PersistentContainer<Grid, AdaptedValues>;
+
+ static constexpr int dim = Grid::dimension;
+ static constexpr int dimWorld = Grid::dimensionworld;
+ static constexpr bool isBox = GET_PROP_VALUE(TypeTag, DiscretizationMethod) == DiscretizationMethods::Box;
+
+ //! export some indices
+ enum {
+ // index of saturation in primary variables
+ saturationIdx = Indices::saturationIdx,
+
+ // phase indices
+ wPhaseIdx = Indices::wPhaseIdx,
+ nPhaseIdx = Indices::nPhaseIdx,
+
+ // formulations
+ pwsn = Indices::pwsn,
+ pnsw = Indices::pnsw,
+
+ // the formulation that is actually used
+ formulation = GET_PROP_VALUE(TypeTag, Formulation)
+ };
+
+ //! This won't work (mass conservative) for compressible fluids
+ static_assert(!FluidSystem::isCompressible(wPhaseIdx)
+ && !FluidSystem::isCompressible(nPhaseIdx),
+ "This adaption helper is only mass conservative for incompressible fluids!");
+
+ //! check if the used formulation is implemented here
+ static_assert(formulation == pwsn || formulation == pnsw, "Chosen formulation not known to the TwoPGridDataTransfer");
+
+public:
+ /*! \brief Constructor
+ *
+ * \param problem The DuMuX problem to be solved
+ * \param fvGridGeometry The finite volume grid geometry
+ * \param gridVariables The secondary variables on the grid
+ * \param sol The solution (primary variables) on the grid
+ */
+ TwoPGridDataTransfer(std::shared_ptr<const Problem> problem,
+ std::shared_ptr<FVGridGeometry> fvGridGeometry,
+ std::shared_ptr<const GridVariables> gridVariables,
+ SolutionVector& sol)
+ : GridDataTransfer()
+ , problem_(problem)
+ , fvGridGeometry_(fvGridGeometry)
+ , gridVariables_(gridVariables)
+ , sol_(sol)
+ , adaptionMap_(fvGridGeometry->gridView().grid(), 0)
+ {}
+
+ /*! \brief Stores primary variables and additional data
+ *
+ * To reconstruct the solution in father elements, problem properties might
+ * need to be accessed. From upper level on downwards, the old solution is stored
+ * into a container object, before the grid is adapted. Father elements hold averaged
+ * information from the son cells for the case of the sons being coarsened.
+ */
+ void store() override
+ {
+ adaptionMap_.resize();
+
+ const auto& grid = fvGridGeometry_->gridView().grid();
+ for (auto level = grid.maxLevel(); level >= 0; level--)
+ {
+ for (const auto& element : elements(grid.levelGridView(level)))
+ {
+ //! get map entry
+ auto& adaptedValues = adaptionMap_[element];
+
+ //! put values in the map for leaf elements
+ if (element.isLeaf())
+ {
+ auto fvGeometry = localView(*fvGridGeometry_);
+ fvGeometry.bindElement(element);
+
+ //! store current element solution
+ adaptedValues.u = ElementSolution(element, sol_, *fvGridGeometry_);
+
+ //! compute mass in the scvs
+ for (const auto& scv : scvs(fvGeometry))
+ {
+ VolumeVariables volVars;
+ volVars.update(adaptedValues.u, *problem_, element, scv);
+
+ const auto poreVolume = scv.volume()*volVars.porosity();
+ adaptedValues.associatedMass[nPhaseIdx] += poreVolume * volVars.density(nPhaseIdx) * volVars.saturation(nPhaseIdx);
+ adaptedValues.associatedMass[wPhaseIdx] += poreVolume * volVars.density(wPhaseIdx) * volVars.saturation(wPhaseIdx);
+ }
+
+ //! leaf elements always start with count = 1
+ adaptedValues.count = 1;
+ adaptedValues.wasLeaf = true;
+ }
+ //! Average in father elements
+ if (element.level() > 0)
+ {
+ auto& adaptedValuesFather = adaptionMap_[element.father()];
+ // For some grids the father element is identical to the son element.
+ // In that case averaging is not necessary.
+ if(&adaptedValues != &adaptedValuesFather)
+ storeAdaptionValues(adaptedValues, adaptedValuesFather);
+ }
+
+ //! The vertices of the non-leaf elements exist on the leaf as well
+ //! This element solution constructor uses the vertex mapper to obtain
+ //! the privars at the vertices, thus, this works for non-leaf elements!
+ if(isBox && !element.isLeaf())
+ adaptedValues.u = ElementSolution(element, sol_, *fvGridGeometry_);
+ }
+ }
+ }
+
+ /*! \brief Reconstruct missing primary variables (where elements are created/deleted)
+ *
+ * To reconstruct the solution in father elements, problem properties might
+ * need to be accessed.
+ * Starting from the lowest level, the old solution is mapped on the new grid:
+ * Where coarsened, new cells get information from old father element.
+ * Where refined, a new solution is reconstructed from the old father cell,
+ * and then a new son is created. That is then stored into the general data
+ * structure (AdaptedValues).
+ */
+ void reconstruct() override
+ {
+ //! resize stuff (grid might have changed)
+ adaptionMap_.resize();
+ fvGridGeometry_->update();
+ sol_.resize(fvGridGeometry_->numDofs());
+
+ //! vectors storing the mass associated with each vertex, when using the box method
+ std::vector<Scalar> massCoeff;
+ std::vector<Scalar> associatedMass;
+
+ if(isBox)
+ {
+ massCoeff.resize(fvGridGeometry_->numDofs(), 0.0);
+ associatedMass.resize(fvGridGeometry_->numDofs(), 0.0);
+ }
+
+ //! iterate over leaf and reconstruct the solution
+ for (const auto& element : elements(fvGridGeometry_->gridView().grid().leafGridView(), Dune::Partitions::interior))
+ {
+ if (!element.isNew())
+ {
+ const auto& adaptedValues = adaptionMap_[element];
+
+ auto fvGeometry = localView(*fvGridGeometry_);
+ fvGeometry.bindElement(element);
+
+ //! obtain element solution from map (divide by count!)
+ auto elemSol = adaptedValues.u;
+ if (!isBox)
+ elemSol[0] /= adaptedValues.count;
+
+ const auto elementVolume = element.geometry().volume();
+ for (const auto& scv : scvs(fvGeometry))
+ {
+ VolumeVariables volVars;
+ volVars.update(elemSol, *problem_, element, scv);
+
+ //! write solution at dof in current solution vector
+ sol_[scv.dofIndex()] = elemSol[scv.indexInElement()];
+
+ const auto dofIdxGlobal = scv.dofIndex();
+ //! For cc schemes, overwrite the saturation by a mass conservative one here
+ if (!isBox)
+ {
+ //! only recalculate the saturations if element hasn't been leaf before adaptation
+ if (!adaptedValues.wasLeaf)
+ {
+ if (formulation == pwsn)
+ {
+ sol_[dofIdxGlobal][saturationIdx] = adaptedValues.associatedMass[nPhaseIdx];
+ sol_[dofIdxGlobal][saturationIdx] /= elementVolume * volVars.density(nPhaseIdx) * volVars.porosity();
+ }
+ else if (formulation == pnsw)
+ {
+ sol_[dofIdxGlobal][saturationIdx] = adaptedValues.associatedMass[wPhaseIdx];
+ sol_[dofIdxGlobal][saturationIdx] /= elementVolume * volVars.density(wPhaseIdx) * volVars.porosity();
+ }
+ }
+ }
+
+ //! For the box scheme, add mass & mass coefficient to container (saturations are recalculated at the end)
+ else
+ {
+ const auto scvVolume = scv.volume();
+ if (formulation == pwsn)
+ {
+ massCoeff[dofIdxGlobal] += scvVolume * volVars.density(nPhaseIdx) * volVars.porosity();
+ associatedMass[dofIdxGlobal] += scvVolume / elementVolume * adaptedValues.associatedMass[nPhaseIdx];
+ }
+ else if (formulation == pnsw)
+ {
+ massCoeff[dofIdxGlobal] += scvVolume * volVars.density(wPhaseIdx) * volVars.porosity();
+ associatedMass[dofIdxGlobal] += scvVolume / elementVolume * adaptedValues.associatedMass[wPhaseIdx];
+ }
+ }
+ }
+ }
+ else
+ {
+ //! value is not in map, interpolate from father element
+ assert(element.hasFather() && "new element does not have a father element!");
+
+ //! find the ancestor element that existed on the old grid already
+ auto fatherElement = element.father();
+ while(fatherElement.isNew() && fatherElement.level() > 0)
+ fatherElement = fatherElement.father();
+
+ if(!isBox)
+ {
+ const auto& adaptedValuesFather = adaptionMap_[fatherElement];
+
+ //! obtain the mass contained in father
+ Scalar massFather = 0.0;
+ if (formulation == pwsn)
+ massFather = adaptedValuesFather.associatedMass[nPhaseIdx];
+ else if (formulation == pnsw)
+ massFather = adaptedValuesFather.associatedMass[wPhaseIdx];
+
+ // obtain the element solution through the father
+ auto elemSolSon = adaptedValuesFather.u;
+ elemSolSon[0] /= adaptedValuesFather.count;
+
+ auto fvGeometry = localView(*fvGridGeometry_);
+ fvGeometry.bindElement(element);
+
+ for (const auto& scv : scvs(fvGeometry))
+ {
+ VolumeVariables volVars;
+ volVars.update(elemSolSon, *problem_, element, scv);
+
+ //! store constructed values of son in the current solution
+ sol_[scv.dofIndex()] = elemSolSon[0];
+
+ //! overwrite the saturation by a mass conservative one here
+ Scalar massCoeffSon = 0.0;
+ if (formulation == pwsn)
+ massCoeffSon = scv.volume() * volVars.density(nPhaseIdx) * volVars.porosity();
+ else if (formulation == pnsw)
+ massCoeffSon = scv.volume() * volVars.density(wPhaseIdx) * volVars.porosity();
+ sol_[scv.dofIndex()][saturationIdx] = (scv.volume() / fatherElement.geometry().volume() * massFather)/massCoeffSon;
+ }
+ }
+ else
+ {
+ auto& adaptedValuesFather = adaptionMap_[fatherElement];
+
+ auto fvGeometry = localView(*fvGridGeometry_);
+ fvGeometry.bindElement(element);
+
+ //! interpolate solution in the father to the vertices of the new son
+ ElementSolution elemSolSon(element, sol_, *fvGridGeometry_);
+ const auto fatherGeometry = fatherElement.geometry();
+ for (const auto& scv : scvs(fvGeometry))
+ elemSolSon[scv.indexInElement()] = evalSolution(fatherElement,
+ fatherGeometry,
+ adaptedValuesFather.u,
+ scv.dofPosition());
+
+ //! compute mass & mass coeffients for the scvs (saturations are recalculated at the end)
+ const auto fatherElementVolume = fatherGeometry.volume();
+ for (const auto& scv : scvs(fvGeometry))
+ {
+ VolumeVariables volVars;
+ volVars.update(elemSolSon, *problem_, element, scv);
+
+ const auto dofIdxGlobal = scv.dofIndex();
+ const auto scvVolume = scv.volume();
+ if (int(formulation) == pwsn)
+ {
+ massCoeff[dofIdxGlobal] += scvVolume * volVars.density(nPhaseIdx) * volVars.porosity();
+ associatedMass[dofIdxGlobal] += scvVolume / fatherElementVolume * adaptedValuesFather.associatedMass[nPhaseIdx];
+ }
+ else if (int(formulation) == pnsw)
+ {
+ massCoeff[dofIdxGlobal] += scvVolume * volVars.density(wPhaseIdx) * volVars.porosity();
+ associatedMass[dofIdxGlobal] += scvVolume / fatherElementVolume * adaptedValuesFather.associatedMass[wPhaseIdx];
+ }
+
+ //! store constructed (pressure) values of son in the current solution (saturation comes later)
+ sol_[dofIdxGlobal] = elemSolSon[scv.indexInElement()];
+ }
+ }
+ }
+ }
+
+ if(isBox)
+ {
+ for(std::size_t dofIdxGlobal = 0; dofIdxGlobal < fvGridGeometry_->numDofs(); dofIdxGlobal++)
+ sol_[dofIdxGlobal][saturationIdx] = associatedMass[dofIdxGlobal] / massCoeff[dofIdxGlobal];
+ }
+
+ //! reset entries in adaptation map
+ adaptionMap_.resize( typename PersistentContainer::Value() );
+ adaptionMap_.shrinkToFit();
+ adaptionMap_.fill( typename PersistentContainer::Value() );
+
+//! TODO: fix adaptive simulations in parallel
+//#if HAVE_MPI
+// // communicate ghost data
+// typedef typename GET_PROP(TypeTag, SolutionTypes) SolutionTypes;
+// typedef typename SolutionTypes::ElementMapper ElementMapper;
+// typedef VectorExchange<ElementMapper, std::vector<CellData> > DataHandle;
+// DataHandle dataHandle(problem.elementMapper(), this->cellDataGlobal());
+// problem.gridView().template communicate<DataHandle>(dataHandle,
+// Dune::InteriorBorder_All_Interface,
+// Dune::ForwardCommunication);
+//#endif
+ }
+
+ private:
+
+ /*! \brief Stores sons entries into father element for averaging
+ *
+ * Sum up the adaptedValues (sons values) into father element. We store from leaf
+ * upwards, so sons are stored first, then cells on the next leaf (=fathers)
+ * can be averaged.
+ *
+ * \param adaptedValues Container for model-specific values to be adapted
+ * \param adaptedValuesFather Values to be adapted of father cell
+ */
+ static void storeAdaptionValues(AdaptedValues& adaptedValues,
+ AdaptedValues& adaptedValuesFather)
+ {
+ //! Add associated mass of the child to the one of the father
+ adaptedValuesFather.associatedMass += adaptedValues.associatedMass;
+
+ if(!isBox)
+ {
+ //! add the child's primary variables to the ones of father
+ //! we have to divide the child's ones in case it was composed
+ //! of several children as well!
+ auto values = adaptedValues.u[0];
+ values /= adaptedValues.count;
+ adaptedValuesFather.u[0] += values;
+
+ //! keep track of the number of children that composed this father
+ adaptedValuesFather.count += 1;
+
+ //! A father element is never leaf
+ adaptedValuesFather.wasLeaf = false;
+ }
+ else
+ {
+ //! For the box scheme, scaling of primary variables by count is obsolete
+ //! Thus, we always want count = 1
+ adaptedValuesFather.count = 1;
+
+ //! A father element is never leaf
+ adaptedValuesFather.wasLeaf = false;
+ }
+ }
+
+ std::shared_ptr<const Problem> problem_;
+ std::shared_ptr<FVGridGeometry> fvGridGeometry_;
+ std::shared_ptr<const GridVariables> gridVariables_;
+ SolutionVector& sol_;
+ PersistentContainer adaptionMap_;
+};
+
+} // end namespace Dumux
+
+#endif /* DUMUX_TWOP_GRIDDATA_TRANSFER_HH */
diff --git a/test/porousmediumflow/2p/implicit/CMakeLists.txt b/test/porousmediumflow/2p/implicit/CMakeLists.txt
index 1bb24dedd40b5563940ec5a50bd29117359e35f1..b32b5495d7ee09e1249a4e8ea2b90094cd204445 100644
--- a/test/porousmediumflow/2p/implicit/CMakeLists.txt
+++ b/test/porousmediumflow/2p/implicit/CMakeLists.txt
@@ -1,42 +1,4 @@
-#add_subdirectory(pointsources)
+add_subdirectory(adaptive)
add_subdirectory(fracture)
add_subdirectory(incompressible)
add_subdirectory(nonisothermal)
-add_input_file_links()
-dune_symlink_to_source_files(FILES grids)
-
-# # isothermal tests
-# add_dumux_test(test_ccadaptive2p test_ccadaptive2p test_ccadaptive2p.cc
-# python ${CMAKE_SOURCE_DIR}/bin/testing/runtest.py
-# --script fuzzy
-# --files ${CMAKE_SOURCE_DIR}/test/references/lensccadaptive-reference.vtu
-# ${CMAKE_CURRENT_BINARY_DIR}/lensccadaptive-00017.vtu
-# --command "${CMAKE_CURRENT_BINARY_DIR}/test_ccadaptive2p")
-#
-# add_dumux_test(test_boxadaptive2p test_boxadaptive2p test_boxadaptive2p.cc
-# python ${CMAKE_SOURCE_DIR}/bin/testing/runtest.py
-# --script fuzzy
-# --files ${CMAKE_SOURCE_DIR}/test/references/lensboxadaptive-reference.vtu
-# ${CMAKE_CURRENT_BINARY_DIR}/lensboxadaptive-00014.vtu
-# --command "${CMAKE_CURRENT_BINARY_DIR}/test_boxadaptive2p")
-#
-# if(HAVE_OPM_GRID)
-# add_dumux_test(test_cc2pcornerpoint test_cc2pcornerpoint test_cc2pcornerpoint.cc
-# python ${CMAKE_SOURCE_DIR}/bin/testing/runtest.py
-# --script fuzzy
-# --files ${CMAKE_SOURCE_DIR}/test/references/cc2pcornerpoint-reference.vtu
-# ${CMAKE_CURRENT_BINARY_DIR}/cc2pcornerpoint-00005.vtu
-# --command "${CMAKE_CURRENT_BINARY_DIR}/test_cc2pcornerpoint")
-# endif()
-
-#install sources
-install(FILES
-cc2pcornerpointproblem.hh
-cc2pcornerpointspatialparams.hh
-generalizeddirichletproblem.hh
-generalizeddirichletspatialparams.hh
-test_boxadaptive2p.cc
-test_cc2pcornerpoint.cc
-test_ccadaptive2p.cc
-test_generalizeddirichlet.cc
-DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/test/implicit/2p)
diff --git a/test/porousmediumflow/2p/implicit/adaptive/CMakeLists.txt b/test/porousmediumflow/2p/implicit/adaptive/CMakeLists.txt
new file mode 100644
index 0000000000000000000000000000000000000000..c245d2b72f7603bdf966dc4afe7dc8406f7b5f7d
--- /dev/null
+++ b/test/porousmediumflow/2p/implicit/adaptive/CMakeLists.txt
@@ -0,0 +1,47 @@
+dune_symlink_to_source_files(FILES "test_2p_adaptive.input")
+
+# using tpfa
+dune_add_test(NAME test_2p_adaptive_tpfa
+ SOURCES test_2p_adaptive_fv.cc
+ COMPILE_DEFINITIONS TYPETAG=TwoPIncompressibleAdaptiveTpfa
+ CMAKE_GUARD dune-alugrid_FOUND
+ COMMAND ${CMAKE_SOURCE_DIR}/bin/testing/runtest.py
+ CMD_ARGS --script fuzzy
+ --files ${CMAKE_SOURCE_DIR}/test/references/lensccadaptive-reference.vtu
+ ${CMAKE_CURRENT_BINARY_DIR}/2p_adaptive_tpfa-00016.vtu
+ --command "${CMAKE_CURRENT_BINARY_DIR}/test_2p_adaptive_tpfa test_2p_adaptive.input -Problem.Name 2p_adaptive_tpfa")
+
+# using tpfa and point source
+dune_add_test(NAME test_2p_adaptive_ps_tpfa
+ SOURCES test_2p_adaptive_fv.cc
+ COMPILE_DEFINITIONS TYPETAG=TwoPAdaptivePointSource
+ CMAKE_GUARD dune-alugrid_FOUND
+ COMMAND ${CMAKE_SOURCE_DIR}/bin/testing/runtest.py
+ CMD_ARGS --script fuzzy
+ --files ${CMAKE_SOURCE_DIR}/test/references/lensccadaptivepointsource-reference.vtu
+ ${CMAKE_CURRENT_BINARY_DIR}/2p_adaptive_ps_tpfa-00018.vtu
+ --command "${CMAKE_CURRENT_BINARY_DIR}/test_2p_adaptive_ps_tpfa test_2p_adaptive.input -Problem.Name 2p_adaptive_ps_tpfa")
+
+# using mpfa
+dune_add_test(NAME test_2p_adaptive_mpfa
+ SOURCES test_2p_adaptive_fv.cc
+ COMPILE_DEFINITIONS TYPETAG=TwoPIncompressibleAdaptiveMpfa
+ CMAKE_GUARD dune-alugrid_FOUND
+ COMMAND ${CMAKE_SOURCE_DIR}/bin/testing/runtest.py
+ CMD_ARGS --script fuzzy
+ --files ${CMAKE_SOURCE_DIR}/test/references/lensccadaptive-reference.vtu
+ ${CMAKE_CURRENT_BINARY_DIR}/2p_adaptive_mpfa-00008.vtu
+ --command "${CMAKE_CURRENT_BINARY_DIR}/test_2p_adaptive_mpfa test_2p_adaptive.input -Problem.Name 2p_adaptive_mpfa")
+
+# using box
+dune_add_test(NAME test_2p_adaptive_box
+ SOURCES test_2p_adaptive_fv.cc
+ COMPILE_DEFINITIONS TYPETAG=TwoPIncompressibleAdaptiveBox
+ CMAKE_GUARD dune-uggrid_FOUND
+ COMMAND ${CMAKE_SOURCE_DIR}/bin/testing/runtest.py
+ CMD_ARGS --script fuzzy
+ --files ${CMAKE_SOURCE_DIR}/test/references/lensboxadaptive-reference.vtu
+ ${CMAKE_CURRENT_BINARY_DIR}/2p_adaptive_box-00011.vtu
+ --command "${CMAKE_CURRENT_BINARY_DIR}/test_2p_adaptive_box test_2p_adaptive.input -Problem.Name 2p_adaptive_box")
+
+set(CMAKE_BUILD_TYPE Release)
diff --git a/test/porousmediumflow/2p/implicit/adaptive/pointsourceproblem.hh b/test/porousmediumflow/2p/implicit/adaptive/pointsourceproblem.hh
new file mode 100644
index 0000000000000000000000000000000000000000..ac9b723fd29ca7a2e5a9a7d961ca64c5a23139c7
--- /dev/null
+++ b/test/porousmediumflow/2p/implicit/adaptive/pointsourceproblem.hh
@@ -0,0 +1,65 @@
+// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
+// vi: set et ts=4 sw=4 sts=4:
+/*****************************************************************************
+ * See the file COPYING for full copying permissions. *
+ * *
+ * This program is free software: you can redistribute it and/or modify *
+ * it under the terms of the GNU General Public License as published by *
+ * the Free Software Foundation, either version 2 of the License, or *
+ * (at your option) any later version. *
+ * *
+ * This program is distributed in the hope that it will be useful, *
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
+ * GNU General Public License for more details. *
+ * *
+ * You should have received a copy of the GNU General Public License *
+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
+ *****************************************************************************/
+/*!
+ * \file
+ *
+ * \brief Soil contamination problem where DNAPL infiltrates a fully
+ * water saturated medium.
+ */
+
+#ifndef DUMUX_LENSPROBLEM_POINTSOURCE_HH
+#define DUMUX_LENSPROBLEM_POINTSOURCE_HH
+
+#include "../incompressible/problem.hh"
+
+namespace Dumux
+{
+
+template <class TypeTag >
+class PointSourceTestProblem : public TwoPTestProblem<TypeTag>
+{
+ using ParentType = TwoPTestProblem<TypeTag>;
+ using PointSource = typename GET_PROP_TYPE(TypeTag, PointSource);
+
+public:
+ //! Use parent's constructor
+ using ParentType::ParentType;
+
+ /*!
+ * \brief Applies a vector of point sources. The point sources
+ * are possibly solution dependent.
+ *
+ * \param pointSources A vector of PointSource s that contain
+ source values for all phases and space positions.
+ *
+ * For this method, the \a values method of the point source
+ * has to return the absolute mass rate in untis
+ * \f$ [ \textnormal{unit of conserved quantity} / s ] \f$.
+ * Positive values mean that mass is created, negative ones mean that it vanishes.
+ */
+ void addPointSources(std::vector<PointSource>& pointSources) const
+ {
+ // inject 2 kg/s of non-wetting phase at position (1, 1);
+ pointSources.push_back(PointSource({0.502, 3.02}, {0, 0.1}));
+ }
+};
+
+} //end namespace
+
+#endif
diff --git a/test/porousmediumflow/2p/implicit/adaptive/test_2p_adaptive.input b/test/porousmediumflow/2p/implicit/adaptive/test_2p_adaptive.input
new file mode 100644
index 0000000000000000000000000000000000000000..296ed5b9e4448153454202e517be99e11879c8e2
--- /dev/null
+++ b/test/porousmediumflow/2p/implicit/adaptive/test_2p_adaptive.input
@@ -0,0 +1,24 @@
+[TimeLoop]
+DtInitial = 250 # [s]
+TEnd = 3000 # [s]
+
+[Grid]
+UpperRight = 6 4
+Cells = 48 32
+CellType = Cube
+ClosureType = Green
+
+[SpatialParams]
+LensLowerLeft = 1.0 2.0 # [m] coordinates of the lower left lens corner
+LensUpperRight = 4.0 3.0 # [m] coordinates of the upper right lens corner
+
+[Problem]
+Name = 2padaptive # name passed to the output routines
+
+[Adaptive]
+RefineAtDirichletBC = 0
+RefineAtFluxBC = 1
+MinLevel = 0
+MaxLevel = 2
+CoarsenTolerance = 1e-4
+RefineTolerance = 1e-4
diff --git a/test/porousmediumflow/2p/implicit/adaptive/test_2p_adaptive_fv.cc b/test/porousmediumflow/2p/implicit/adaptive/test_2p_adaptive_fv.cc
new file mode 100644
index 0000000000000000000000000000000000000000..c4cdb0d485f1c71ae304ae5f31c5d9c1ebf46f12
--- /dev/null
+++ b/test/porousmediumflow/2p/implicit/adaptive/test_2p_adaptive_fv.cc
@@ -0,0 +1,310 @@
+// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
+// vi: set et ts=4 sw=4 sts=4:
+/*****************************************************************************
+ * See the file COPYING for full copying permissions. *
+ * *
+ * This program is free software: you can redistribute it and/or modify *
+ * it under the terms of the GNU General Public License as published by *
+ * the Free Software Foundation, either version 2 of the License, or *
+ * (at your option) any later version. *
+ * *
+ * This program is distributed in the hope that it will be useful, *
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
+ * GNU General Public License for more details. *
+ * *
+ * You should have received a copy of the GNU General Public License *
+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
+ *****************************************************************************/
+/*!
+ * \file
+ *
+ * \brief test for the two-phase porousmedium flow model
+ */
+#include <config.h>
+
+#include <ctime>
+#include <iostream>
+
+#include <dune/common/parallel/mpihelper.hh>
+#include <dune/common/timer.hh>
+#include <dune/grid/io/file/dgfparser/dgfexception.hh>
+#include <dune/grid/io/file/vtk.hh>
+#include <dune/istl/io.hh>
+
+#include <dumux/common/properties.hh>
+#include <dumux/common/parameters.hh>
+#include <dumux/common/dumuxmessage.hh>
+#include <dumux/common/defaultusagemessage.hh>
+
+#include <dumux/linear/amgbackend.hh>
+#include <dumux/nonlinear/newtonmethod.hh>
+#include <dumux/nonlinear/newtoncontroller.hh>
+
+#include <dumux/assembly/fvassembler.hh>
+#include <dumux/assembly/diffmethod.hh>
+
+#include <dumux/discretization/methods.hh>
+
+#include <dumux/io/vtkoutputmodule.hh>
+
+#include <dumux/adaptive/adapt.hh>
+#include <dumux/adaptive/markelements.hh>
+#include <dumux/adaptive/initializationindicator.hh>
+#include <dumux/porousmediumflow/2p/implicit/griddatatransfer.hh>
+#include <dumux/porousmediumflow/2p/implicit/gridadaptindicator.hh>
+
+//! Use the incompressible or point source problem for this adaptive test
+#include <test/porousmediumflow/2p/implicit/incompressible/problem.hh>
+#include "pointsourceproblem.hh"
+
+//! type tags for the adaptive versions of the two-phase incompressible problem
+namespace Dumux {
+namespace Properties {
+//! Type Tags for the adaptive tests
+NEW_TYPE_TAG(TwoPIncompressibleAdaptiveTpfa, INHERITS_FROM(TwoPIncompressibleTpfa));
+NEW_TYPE_TAG(TwoPIncompressibleAdaptiveMpfa, INHERITS_FROM(TwoPIncompressibleMpfa));
+NEW_TYPE_TAG(TwoPIncompressibleAdaptiveBox, INHERITS_FROM(TwoPIncompressibleBox));
+NEW_TYPE_TAG(TwoPAdaptivePointSource, INHERITS_FROM(TwoPIncompressibleAdaptiveTpfa));
+
+//! Use non-conforming refinement in the cell-centered tests, conforming for box
+SET_TYPE_PROP(TwoPIncompressibleAdaptiveTpfa, Grid, Dune::ALUGrid<2, 2, Dune::cube, Dune::nonconforming>);
+SET_TYPE_PROP(TwoPIncompressibleAdaptiveMpfa, Grid, Dune::ALUGrid<2, 2, Dune::cube, Dune::nonconforming>);
+SET_TYPE_PROP(TwoPIncompressibleAdaptiveBox, Grid, Dune::UGGrid<2>);
+SET_TYPE_PROP(TwoPAdaptivePointSource, Problem, PointSourceTestProblem<TypeTag>);
+} // end namespace Properties
+} // end namespace Dumux
+
+int main(int argc, char** argv) try
+{
+ using namespace Dumux;
+
+ // define the type tag for this problem
+ using TypeTag = TTAG(TYPETAG);
+
+ // initialize MPI, finalize is done automatically on exit
+ const auto& mpiHelper = Dune::MPIHelper::instance(argc, argv);
+
+ // print dumux start message
+ if (mpiHelper.rank() == 0)
+ DumuxMessage::print(/*firstCall=*/true);
+
+ // parse command line arguments and input file
+ Parameters::init(argc, argv);
+
+ // try to create a grid (from the given grid file or the input file)
+ using GridCreator = typename GET_PROP_TYPE(TypeTag, GridCreator);
+ GridCreator::makeGrid();
+ GridCreator::loadBalance();
+
+ ////////////////////////////////////////////////////////////
+ // run instationary non-linear problem on this grid
+ ////////////////////////////////////////////////////////////
+
+ // we compute on the leaf grid view
+ const auto& leafGridView = GridCreator::grid().leafGridView();
+
+ // create the finite volume grid geometry
+ using FVGridGeometry = typename GET_PROP_TYPE(TypeTag, FVGridGeometry);
+ auto fvGridGeometry = std::make_shared<FVGridGeometry>(leafGridView);
+ fvGridGeometry->update();
+
+ // the problem (initial and boundary conditions)
+ using Problem = typename GET_PROP_TYPE(TypeTag, Problem);
+ auto problem = std::make_shared<Problem>(fvGridGeometry);
+
+ // the solution vector
+ using SolutionVector = typename GET_PROP_TYPE(TypeTag, SolutionVector);
+ SolutionVector x(fvGridGeometry->numDofs());
+ problem->applyInitialSolution(x);
+ auto xOld = x;
+
+ // the grid variables
+ using GridVariables = typename GET_PROP_TYPE(TypeTag, GridVariables);
+ auto gridVariables = std::make_shared<GridVariables>(problem, fvGridGeometry);
+ gridVariables->init(x, xOld);
+
+ // instantiate indicator & data transfer, read parameters for indicator
+ using Scalar = typename GET_PROP_TYPE(TypeTag, Scalar);
+ const Scalar refineTol = getParam<Scalar>("Adaptive.RefineTolerance");
+ const Scalar coarsenTol = getParam<Scalar>("Adaptive.CoarsenTolerance");
+ TwoPGridAdaptIndicator<TypeTag> indicator(fvGridGeometry);
+ TwoPGridDataTransfer<TypeTag> dataTransfer(problem, fvGridGeometry, gridVariables, x);
+
+ // Do initial refinement around sources/BCs
+ GridAdaptInitializationIndicator<TypeTag> initIndicator(problem, fvGridGeometry, gridVariables);
+
+ // refine up to the maximum level
+ const auto maxLevel = getParam<std::size_t>("Adaptive.MaxLevel", 0);
+ for (std::size_t i = 0; i < maxLevel; ++i)
+ {
+ initIndicator.calculate(x);
+
+ bool wasAdapted = false;
+ if (markElements(GridCreator::grid(), initIndicator))
+ wasAdapted = adapt(GridCreator::grid(), dataTransfer);
+
+ // update grid data after adaption
+ if (wasAdapted)
+ {
+ xOld = x; //! Overwrite the old solution with the new (resized & interpolated) one
+ gridVariables->init(x, xOld); //! Initialize the secondary variables to the new (and "new old") solution
+ problem->computePointSourceMap(); //! Update the point source map
+ }
+ }
+
+ // Do refinement for the initial conditions using our indicator
+ // we set coarsen tolerance to 0.0 because we do not want any coarsening to be done here
+ indicator.calculate(x, refineTol, /*coarsenTol*/0.0);
+
+ bool wasAdapted = false;
+ if (markElements(GridCreator::grid(), indicator))
+ wasAdapted = adapt(GridCreator::grid(), dataTransfer);
+
+ // update grid data after adaption
+ if (wasAdapted)
+ {
+ xOld = x; //! Overwrite the old solution with the new (resized & interpolated) one
+ gridVariables->init(x, xOld); //! Initialize the secondary variables to the new (and "new old") solution
+ problem->computePointSourceMap(); //! Update the point source map
+ }
+
+ // get some time loop parameters
+ using Scalar = typename GET_PROP_TYPE(TypeTag, Scalar);
+ const auto tEnd = getParam<Scalar>("TimeLoop.TEnd");
+ const auto maxDivisions = getParam<int>("TimeLoop.MaxTimeStepDivisions");
+ const auto maxDt = getParam<Scalar>("TimeLoop.MaxTimeStepSize");
+ auto dt = getParam<Scalar>("TimeLoop.DtInitial");
+
+ // check if we are about to restart a previously interrupted simulation
+ Scalar restartTime = 0;
+ if (haveParam("Restart") || haveParam("TimeLoop.Restart"))
+ restartTime = getParam<Scalar>("TimeLoop.Restart");
+
+ // intialize the vtk output module
+ using VtkOutputFields = typename GET_PROP_TYPE(TypeTag, VtkOutputFields);
+ VtkOutputModule<TypeTag> vtkWriter(*problem, *fvGridGeometry, *gridVariables, x, problem->name());
+ VtkOutputFields::init(vtkWriter); //! Add model specific output fields
+ vtkWriter.write(0.0);
+
+ // instantiate time loop
+ auto timeLoop = std::make_shared<TimeLoop<Scalar>>(restartTime, dt, tEnd);
+ timeLoop->setMaxTimeStepSize(maxDt);
+
+ // the assembler with time loop for instationary problem
+ using Assembler = FVAssembler<TypeTag, DiffMethod::numeric>;
+ auto assembler = std::make_shared<Assembler>(problem, fvGridGeometry, gridVariables, timeLoop);
+
+ // the linear solver
+ using LinearSolver = AMGBackend<TypeTag>;
+ auto linearSolver = std::make_shared<LinearSolver>(leafGridView, fvGridGeometry->dofMapper());
+
+ // the non-linear solver
+ using NewtonController = Dumux::NewtonController<TypeTag>;
+ using NewtonMethod = Dumux::NewtonMethod<NewtonController, Assembler, LinearSolver>;
+ auto newtonController = std::make_shared<NewtonController>(leafGridView.comm(), timeLoop);
+ NewtonMethod nonLinearSolver(newtonController, assembler, linearSolver);
+
+ // time loop
+ timeLoop->start(); do
+ {
+ // refine/coarsen only after first time step
+ if (timeLoop->time() > restartTime)
+ {
+ // compute refinement indicator
+ indicator.calculate(x, refineTol, coarsenTol);
+
+ // mark elements and maybe adapt grid
+ bool wasAdapted = false;
+ if (markElements(GridCreator::grid(), indicator))
+ wasAdapted = adapt(GridCreator::grid(), dataTransfer);
+
+ if (wasAdapted)
+ {
+ // Note that if we were using point sources, we would have to update the map here as well
+ xOld = x; //! Overwrite the old solution with the new (resized & interpolated) one
+ assembler->setJacobianPattern(); //! Tell the assembler to resize the matrix and set pattern
+ assembler->setResidualSize(); //! Tell the assembler to resize the residual
+ gridVariables->init(x, xOld); //! Initialize the secondary variables to the new (and "new old") solution
+ problem->computePointSourceMap(); //! Update the point source map
+ }
+ }
+
+ // set previous solution for storage evaluations
+ assembler->setPreviousSolution(xOld);
+
+ for (int i = 0; i < maxDivisions; ++i)
+ {
+ // linearize & solve
+ auto converged = nonLinearSolver.solve(x);
+
+ if (converged)
+ break;
+
+ if (!converged && i == maxDivisions-1)
+ DUNE_THROW(Dune::MathError,
+ "Newton solver didn't converge after "
+ << maxDivisions
+ << " time-step divisions. dt="
+ << timeLoop->timeStepSize()
+ << ".\nThe solutions of the current and the previous time steps "
+ << "have been saved to restart files.");
+ }
+
+ // make the new solution the old solution
+ xOld = x;
+ gridVariables->advanceTimeStep();
+
+ // advance to the time loop to the next step
+ timeLoop->advanceTimeStep();
+
+ // write vtk output
+ vtkWriter.write(timeLoop->time());
+
+ // report statistics of this time step
+ timeLoop->reportTimeStep();
+
+ // set new dt as suggested by newton controller
+ timeLoop->setTimeStepSize(newtonController->suggestTimeStepSize(timeLoop->timeStepSize()));
+
+ } while (!timeLoop->finished());
+
+ timeLoop->finalize(leafGridView.comm());
+
+ ////////////////////////////////////////////////////////////
+ // finalize, print dumux message to say goodbye
+ ////////////////////////////////////////////////////////////
+
+ // print dumux end message
+ if (mpiHelper.rank() == 0)
+ {
+ Parameters::print();
+ DumuxMessage::print(/*firstCall=*/false);
+ }
+
+ return 0;
+} // end main
+catch (Dumux::ParameterException &e)
+{
+ std::cerr << std::endl << e << " ---> Abort!" << std::endl;
+ return 1;
+}
+catch (Dune::DGFException & e)
+{
+ std::cerr << "DGF exception thrown (" << e <<
+ "). Most likely, the DGF file name is wrong "
+ "or the DGF file is corrupted, "
+ "e.g. missing hash at end of file or wrong number (dimensions) of entries."
+ << " ---> Abort!" << std::endl;
+ return 2;
+}
+catch (Dune::Exception &e)
+{
+ std::cerr << "Dune reported error: " << e << " ---> Abort!" << std::endl;
+ return 3;
+}
+catch (...)
+{
+ std::cerr << "Unknown exception thrown! ---> Abort!" << std::endl;
+ return 4;
+}
diff --git a/test/porousmediumflow/2p/implicit/cc2pcornerpointproblem.hh b/test/porousmediumflow/2p/implicit/cc2pcornerpointproblem.hh
deleted file mode 100644
index 58bfb24dab91cc52ad842e35f676dcb75787a3ac..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/cc2pcornerpointproblem.hh
+++ /dev/null
@@ -1,327 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-#ifndef DUMUX_CC2P_CORNERPOINT_PROBLEM_HH
-#define DUMUX_CC2P_CORNERPOINT_PROBLEM_HH
-
-#if HAVE_OPM_GRID
-#include <dumux/material/components/simpleh2o.hh>
-#include <dumux/material/components/dnapl.hh>
-#include <dumux/porousmediumflow/2p/implicit/model.hh>
-#include <dumux/porousmediumflow/implicit/problem.hh>
-#include <dumux/implicit/cellcentered/tpfa/properties.hh>
-#include <dumux/linear/amgbackend.hh>
-
-#include <dumux/io/cpgridcreator.hh>
-
-#include "cc2pcornerpointspatialparams.hh"
-
-namespace Dumux
-{
-
-template <class TypeTag>
-class CC2PCornerPointProblem;
-
-namespace Properties
-{
-NEW_TYPE_TAG(CC2PCornerPointProblem, INHERITS_FROM(CCTpfaModel, TwoP, CC2PCornerPointSpatialParams));
-
-// Set the grid type
-SET_TYPE_PROP(CC2PCornerPointProblem, Grid, Dune::CpGrid);
-
-// Set the problem property
-SET_TYPE_PROP(CC2PCornerPointProblem, Problem, CC2PCornerPointProblem<TypeTag>);
-
-// Set the grid creator
-SET_TYPE_PROP(CC2PCornerPointProblem, GridCreator, CpGridCreator<TypeTag>);
-
-// Set the fluid system
-SET_PROP(CC2PCornerPointProblem, FluidSystem)
-{
- using Scalar = typename GET_PROP_TYPE(TypeTag, Scalar);
- using WettingPhase = FluidSystems::LiquidPhase<Scalar, SimpleH2O<Scalar> >;
- using NonwettingPhase = FluidSystems::LiquidPhase<Scalar, DNAPL<Scalar> >;
- using type = FluidSystems::TwoPImmiscible<Scalar, WettingPhase, NonwettingPhase>;
-};
-} // end namespace Properties
-
-template <class TypeTag >
-class CC2PCornerPointProblem : public ImplicitPorousMediaProblem<TypeTag>
-{
- using ParentType = ImplicitPorousMediaProblem<TypeTag>;
- using GridView = typename GET_PROP_TYPE(TypeTag, GridView);
- using GridCreator = typename GET_PROP_TYPE(TypeTag, GridCreator);
- using Scalar = typename GET_PROP_TYPE(TypeTag, Scalar);
- using ElementVolumeVariables = typename GET_PROP_TYPE(TypeTag, ElementVolumeVariables);
- using ElementSolutionVector = typename GET_PROP_TYPE(TypeTag, ElementSolutionVector);
-
- // Grid and world dimension
- static const int dim = GridView::dimension;
- static const int dimWorld = GridView::dimensionworld;
-
- using Indices = typename GET_PROP_TYPE(TypeTag, Indices);
-
- enum {
- // primary variable indices
- pwIdx = Indices::pwIdx,
- snIdx = Indices::snIdx,
-
- // equation indices
- contiNEqIdx = Indices::contiNEqIdx,
- };
-
- using PrimaryVariables = typename GET_PROP_TYPE(TypeTag, PrimaryVariables);
- using BoundaryTypes = typename GET_PROP_TYPE(TypeTag, BoundaryTypes);
- using TimeManager = typename GET_PROP_TYPE(TypeTag, TimeManager);
- using Element = typename GridView::template Codim<0>::Entity;
- using FVElementGeometry = typename GET_PROP_TYPE(TypeTag, FVElementGeometry);
- using SubControlVolume = typename GET_PROP_TYPE(TypeTag, SubControlVolume);
- using SubControlVolumeFace = typename GET_PROP_TYPE(TypeTag, SubControlVolumeFace);
- using GlobalPosition = Dune::FieldVector<Scalar, dimWorld>;
-
-public:
- /*!
- * \brief The constructor
- *
- * \param timeManager The time manager
- * \param gridView The grid view
- */
- CC2PCornerPointProblem(TimeManager &timeManager,
- const GridView &gridView)
- : ParentType(timeManager, gridView), gravity_(0)
- {
- gravity_[dimWorld-1] = 9.81;
- temperature_ = 273.15 + 20; // -> 20°C
-
- name_ = GET_RUNTIME_PARAM_FROM_GROUP(TypeTag, std::string, Problem, Name);
-
- injectionElement_ = GET_RUNTIME_PARAM_FROM_GROUP(TypeTag, int, Problem, InjectionElement);
- injectionRate_ = GET_RUNTIME_PARAM_FROM_GROUP(TypeTag, Scalar, Problem, InjectionRate);
- }
-
- /*!
- * \name Problem parameters
- */
- // \{
-
- /*!
- * \brief Returns the problem name
- *
- * This is used as a prefix for files generated by the simulation.
- */
- const std::string& name() const
- {
- return name_;
- }
-
- /*!
- * \brief User defined output after the time integration
- *
- * Will be called diretly after the time integration.
- */
- void postTimeStep()
- {
- // Calculate storage terms
- PrimaryVariables storage;
- this->model().globalStorage(storage);
-
- // Write mass balance information for rank 0
- if (this->gridView().comm().rank() == 0) {
- std::cout<<"Storage: " << storage << std::endl;
- }
- }
-
- const GlobalPosition& gravity() const
- {
- return gravity_;
- }
-
- /*!
- * \brief Returns the temperature \f$ K \f$
- *
- * This problem assumes a uniform temperature of 20 degrees Celsius.
- */
- Scalar temperature() const
- { return temperature_; }
-
- /*!
- * \brief Evaluate the source term for all phases within a given
- * sub-control-volume.
- *
- * This is the method for the case where the source term is
- * potentially solution dependent and requires some quantities that
- * are specific to the fully-implicit method.
- *
- * \param element The finite element
- * \param fvGeometry The finite-volume geometry
- * \param elemVolVars All volume variables for the element
- * \param scv The sub control volume
- *
- * For this method, the \a values parameter stores the conserved quantity rate
- * generated or annihilate per volume unit. Positive values mean
- * that the conserved quantity is created, negative ones mean that it vanishes.
- * E.g. for the mass balance that would be a mass rate in \f$ [ kg / (m^3 \cdot s)] \f$.
- */
- PrimaryVariables source(const Element &element,
- const FVElementGeometry& fvGeometry,
- const ElementVolumeVariables& elemVolVars,
- const SubControlVolume &scv) const
- {
- PrimaryVariables values(0.0);
-
- int eIdx = GridCreator::grid().leafGridView().indexSet().index(element);
- if (eIdx == injectionElement_)
- values[contiNEqIdx] = injectionRate_/element.geometry().volume();
-
- return values;
- }
-
- // \}
-
- /*!
- * \name Boundary conditions
- */
- // \{
-
- /*!
- * \brief Specifies which kind of boundary condition should be
- * used for which equation on a given boundary control volume.
- */
- BoundaryTypes boundaryTypes(const Element& element, const SubControlVolumeFace& scvf) const
- {
- BoundaryTypes values;
-
- // set no-flux on top and bottom, hydrostatic on the rest
- // use the intersection normal to decide
- const GlobalPosition normal = scvf.unitOuterNormal();
- using std::abs;
- if (abs(normal[dimWorld-1]) > 0.5 - eps_)
- values.setAllNeumann();
- else
- values.setAllDirichlet();
-
- return values;
- }
-
- /*!
- * \brief Evaluates the boundary conditions for a Dirichlet
- * boundary segment
- *
- * \param values Stores the Dirichlet values for the conservation equations in
- * \f$ [ \textnormal{unit of primary variable} ] \f$
- * \param globalPos The global position
- */
- PrimaryVariables dirichletAtPos(const GlobalPosition &globalPos) const
- {
- PrimaryVariables values(0);
-
- // hydrostatic pressure
- Scalar densityW = 1000;
- values[pwIdx] = 1e5 + densityW*(this->gravity()*globalPos);
- values[snIdx] = 0.0;
-
- return values;
- }
-
- /*!
- * \brief Evaluate the boundary conditions for a neumann
- * boundary segment.
- *
- * \param values Stores the Neumann values for the conservation equations in
- * \f$ [ \textnormal{unit of conserved quantity} / (m^(dim-1) \cdot s )] \f$
- * \param globalPos The position of the integration point of the boundary segment.
- *
- * For this method, the \a values parameter stores the mass flux
- * in normal direction of each phase. Negative values mean influx.
- */
- PrimaryVariables neumannAtPos(const GlobalPosition &globalPos) const
- {
- PrimaryVariables values(0.0);
-
- return values;
- }
- // \}
-
- /*!
- * \name Volume terms
- */
- // \{
-
-
- /*!
- * \brief Evaluates the initial values for a control volume
- *
- * \param values Stores the initial values for the conservation equations in
- * \f$ [ \textnormal{unit of primary variables} ] \f$
- * \param globalPos The global position
- */
- PrimaryVariables initialAtPos(const GlobalPosition &globalPos) const
- {
- PrimaryVariables values;
-
- // hydrostatic pressure
- Scalar densityW = 1000;
- values[pwIdx] = 1e5 + densityW*(this->gravity()*globalPos);
- values[snIdx] = 0.0;
-
- return values;
- }
- // \}
-
-
- /*!
- * \brief Adds additional VTK output data to the VTKWriter. Function is called by the output module on every write.
- */
- template<class VtkOutputModule>
- void addVtkOutputFields(VtkOutputModule& outputModule) const
- {
- auto& permX = outputModule.createScalarField("PERMX [mD]", 0);
- auto& permZ = outputModule.createScalarField("PERMZ [mD]", 0);
-
- for (const auto& element : elements(this->gridView()))
- {
- int eIdx = this->elementMapper().index(element);
- auto fvGeometry = localView(this->model().fvGridGeometry());
- fvGeometry.bindElement(element);
-
- for (auto&& scv : scvs(fvGeometry))
- {
- auto K = this->spatialParams().permeability(element, scv,
- this->model().elementSolution(element, this->model().curSol()));
-
- // transfer output to mD = 9.86923e-16 m^2
- permX[eIdx] = K[0][0]/9.86923e-16;
- permZ[eIdx] = K[dimWorld-1][dimWorld-1]/9.86923e-16;
- }
- }
- }
-
-
-private:
- Scalar temperature_;
- static constexpr Scalar eps_ = 3e-6;
- std::string name_;
- GlobalPosition gravity_;
- int injectionElement_;
- Scalar injectionRate_;
-};
-} //end namespace
-
-#endif // HAVE_OPM_GRID
-
-#endif
diff --git a/test/porousmediumflow/2p/implicit/cc2pcornerpointspatialparams.hh b/test/porousmediumflow/2p/implicit/cc2pcornerpointspatialparams.hh
deleted file mode 100644
index 59bffe59ccf06fd1521768f780759cc7689ed56a..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/cc2pcornerpointspatialparams.hh
+++ /dev/null
@@ -1,202 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-#ifndef DUMUX_CC2P_CORNERPOINT_SPATIAL_PARAMS_HH
-#define DUMUX_CC2P_CORNERPOINT_SPATIAL_PARAMS_HH
-
-#include <dumux/material/spatialparams/implicit.hh>
-#include <dumux/material/fluidmatrixinteractions/2p/regularizedvangenuchten.hh>
-#include <dumux/material/fluidmatrixinteractions/2p/linearmaterial.hh>
-#include <dumux/material/fluidmatrixinteractions/2p/efftoabslaw.hh>
-#include <dumux/porousmediumflow/2p/implicit/model.hh>
-
-namespace Dumux
-{
-
-//forward declaration
-template<class TypeTag>
-class CC2PCornerPointSpatialParams;
-
-namespace Properties
-{
-// The spatial parameters TypeTag
-NEW_TYPE_TAG(CC2PCornerPointSpatialParams);
-
-// Set the spatial parameters
-SET_TYPE_PROP(CC2PCornerPointSpatialParams, SpatialParams, CC2PCornerPointSpatialParams<TypeTag>);
-
-// Set the material Law
-SET_PROP(CC2PCornerPointSpatialParams, MaterialLaw)
-{
-private:
- // define the material law which is parameterized by effective
- // saturations
- using Scalar = typename GET_PROP_TYPE(TypeTag, Scalar);
- using EffectiveLaw = RegularizedVanGenuchten<Scalar>;
-public:
- // define the material law parameterized by absolute saturations
- using type = EffToAbsLaw<EffectiveLaw>;
-};
-}
-
-template<class TypeTag>
-class CC2PCornerPointSpatialParams : public ImplicitSpatialParams<TypeTag>
-{
- using ParentType = ImplicitSpatialParams<TypeTag>;
- using Problem = typename GET_PROP_TYPE(TypeTag, Problem);
- using GridView = typename GET_PROP_TYPE(TypeTag, GridView);
- using ElementSolutionVector = typename GET_PROP_TYPE(TypeTag, ElementSolutionVector);
- using GridCreator = typename GET_PROP_TYPE(TypeTag, GridCreator);
- using Scalar = typename GET_PROP_TYPE(TypeTag, Scalar);
-
- enum {
- dim = GridView::dimension,
- dimWorld = GridView::dimensionworld
- };
-
- using GlobalPosition = Dune::FieldVector<Scalar, dimWorld>;
- using Tensor = Dune::FieldMatrix<Scalar, dimWorld, dimWorld>;
-
- using Element = typename GridView::template Codim<0>::Entity;
- using SubControlVolume = typename GET_PROP_TYPE(TypeTag, SubControlVolume);
- typedef typename GET_PROP_TYPE(TypeTag, FVElementGeometry) FVElementGeometry;
-
-public:
- // export permeability type
- using PermeabilityType = Tensor;
-
- //get the material law from the property system
- using MaterialLaw = typename GET_PROP_TYPE(TypeTag, MaterialLaw);
- using MaterialLawParams = typename MaterialLaw::Params;
- /*!
- * \brief The constructor
- *
- * \param gridView The grid view
- */
- CC2PCornerPointSpatialParams(const Problem& problem, const GridView& gridView)
- : ParentType(problem, gridView)
- {
- homogeneous_ = GET_RUNTIME_PARAM_FROM_GROUP(TypeTag, bool, Problem, Homogeneous);
-
- const std::vector<int>& globalCell = GridCreator::grid().globalCell();
-
- if (GridCreator::deck().hasKeyword("PORO")) {
- std::cout << "Found PORO..." << std::endl;
- std::vector<double> eclVector = GridCreator::deck().getKeyword("PORO").getRawDoubleData();
- porosity_.resize(globalCell.size());
-
- for (size_t i = 0; i < globalCell.size(); ++i) {
- if (homogeneous_)
- porosity_[i] = 0.2;
- else
- porosity_[i] = eclVector[globalCell[i]];
- }
- }
-
- if (GridCreator::deck().hasKeyword("PERMX")) {
- std::cout << "Found PERMX..." << std::endl;
- std::vector<double> eclVector = GridCreator::deck().getKeyword("PERMX").getRawDoubleData();
- permX_.resize(globalCell.size());
-
- for (size_t i = 0; i < globalCell.size(); ++i) {
- // assume that values are given in mD = 9.86923e-16 m^2
- if (homogeneous_)
- permX_[i] = 9.86923e-16;
- else
- permX_[i] = 9.86923e-16*eclVector[globalCell[i]];
- }
- }
-
- if (GridCreator::deck().hasKeyword("PERMZ")) {
- std::cout << "Found PERMZ..." << std::endl;
- std::vector<double> eclVector = GridCreator::deck().getKeyword("PERMZ").getRawDoubleData();
- permZ_.resize(globalCell.size());
-
- for (size_t i = 0; i < globalCell.size(); ++i) {
- // assume that values are given in mD = 9.86923e-16 m^2
- if (homogeneous_)
- permZ_[i] = 9.86923e-16;
- else
- permZ_[i] = 9.86923e-16*eclVector[globalCell[i]];
- }
- }
- else {
- std::cout << "PERMZ not found, set equal to PERMX..." << std::endl;
- permZ_ = permX_;
- }
-
- // parameters for the Van Genuchten law
- materialParams_.setVgAlpha(0.00045);
- materialParams_.setVgn(7.3);
- }
-
- PermeabilityType permeability(const Element& element,
- const SubControlVolume& scv,
- const ElementSolutionVector& elemSol) const
- {
- int eIdx = GridCreator::grid().leafGridView().indexSet().index(element);
-
- Tensor K(0);
- K[0][0] = K[1][1] = permX_[eIdx];
- K[2][2] = permZ_[eIdx];
-
- return K;
- }
-
- /*!
- * \brief Returns the porosity \f$[-]\f$
- *
- * \param element The finite element
- * \param fvGeometry The finite volume geometry of the element
- * \param scvIdx The local index of the sub-control volume
- */
- Scalar porosity(const Element& element,
- const SubControlVolume& scv,
- const ElementSolutionVector& elemSol) const
- {
- int eIdx = GridCreator::grid().leafGridView().indexSet().index(element);
-
- return porosity_[eIdx];
- }
-
- /*!
- * \brief Function for defining the parameters needed by constitutive relationships (kr-sw, pc-sw, etc.).
- *
- * \param element The current element
- * \param scv The sub-control volume inside the element.
- * \param elemSol The solution at the dofs connected to the element.
- * \return the material parameters object
- */
- const MaterialLawParams& materialLawParams(const Element& element,
- const SubControlVolume& scv,
- const ElementSolutionVector& elemSol) const
- {
- return materialParams_;
- }
-
-private:
- MaterialLawParams materialParams_;
- std::vector<Scalar> porosity_;
- std::vector<Scalar> permX_;
- std::vector<Scalar> permZ_;
- bool homogeneous_;
-};
-
-} // end namespace
-#endif
-
diff --git a/test/porousmediumflow/2p/implicit/grids/hardsmall.grdecl b/test/porousmediumflow/2p/implicit/grids/hardsmall.grdecl
deleted file mode 100644
index 5ac8ca6029c0449f3b5330dea05feba185ba0f28..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/grids/hardsmall.grdecl
+++ /dev/null
@@ -1,38 +0,0 @@
-MAPUNITS
-'METRES'
-/
-
-SPECGRID
-2 1 2 1 F
-/
-
-COORD
-0 0 0 0 0 2
-1 0 0 1 0 2
-2 0 0 2 0 2
-0 1 0 0 1 2
-1 1 0 1 1 2
-2 1 0 2 1 2
-/
-
-ZCORN
-0 0 0 0 0 0 0 0
-1 1 0.8 1.2 1 1 1.2 1.2
-1 1 0.8 1.2 1 1 1.2 1.2
-2 2 2.2 2 2 2 1.9 2
-/
-
-ACTNUM
-1 1
-1 1
-/
-
-PORO
-0.1 0.1
-0.3 0.3
-/
-
-PERMX
-100 100
-500 500
-/
diff --git a/test/porousmediumflow/2p/implicit/grids/rectangle-domain.geo b/test/porousmediumflow/2p/implicit/grids/rectangle-domain.geo
deleted file mode 100644
index 08298879b6390ed593b4c83a6af832b9ec6d0d7b..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/grids/rectangle-domain.geo
+++ /dev/null
@@ -1,18 +0,0 @@
-// Rectangular structured cube grid
-// compile with gmsh -2 rectangle-domain.geo
-
-Point(1) = {0, 0, 0, 1.0};
-Point(2) = {6, 0, 0, 1.0};
-Point(3) = {6, 4, 0, 1.0};
-Point(4) = {0, 4, 0, 1.0};
-Line(1) = {4, 3};
-Line(2) = {3, 2};
-Line(3) = {2, 1};
-Line(4) = {1, 4};
-Line Loop(6) = {1, 2, 3, 4};
-Plane Surface(7) = {6};
-
-Transfinite Line{1, 3} = 49; // 48 cells
-Transfinite Line{2, 4} = 33; // 33 cells
-Transfinite Surface{7}; // structured surface
-Recombine Surface{7}; // make quarilateral
diff --git a/test/porousmediumflow/2p/implicit/grids/rectangle-domain.msh b/test/porousmediumflow/2p/implicit/grids/rectangle-domain.msh
deleted file mode 100644
index dbc6063059e7ff4e89a21019fd577f30f0be0b23..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/grids/rectangle-domain.msh
+++ /dev/null
@@ -1,3326 +0,0 @@
-$MeshFormat
-2.2 0 8
-$EndMeshFormat
-$Nodes
-1617
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-1275 3 2 0 7 1205 1236 1237 1206
-1276 3 2 0 7 1206 1237 1238 1207
-1277 3 2 0 7 1207 1238 1239 1208
-1278 3 2 0 7 1208 1239 1240 1209
-1279 3 2 0 7 1209 1240 1241 1210
-1280 3 2 0 7 1210 1241 1242 1211
-1281 3 2 0 7 1211 1242 1243 1212
-1282 3 2 0 7 1212 1243 1244 1213
-1283 3 2 0 7 1213 1244 1245 1214
-1284 3 2 0 7 1214 1245 95 96
-1285 3 2 0 7 39 40 1246 1215
-1286 3 2 0 7 1215 1246 1247 1216
-1287 3 2 0 7 1216 1247 1248 1217
-1288 3 2 0 7 1217 1248 1249 1218
-1289 3 2 0 7 1218 1249 1250 1219
-1290 3 2 0 7 1219 1250 1251 1220
-1291 3 2 0 7 1220 1251 1252 1221
-1292 3 2 0 7 1221 1252 1253 1222
-1293 3 2 0 7 1222 1253 1254 1223
-1294 3 2 0 7 1223 1254 1255 1224
-1295 3 2 0 7 1224 1255 1256 1225
-1296 3 2 0 7 1225 1256 1257 1226
-1297 3 2 0 7 1226 1257 1258 1227
-1298 3 2 0 7 1227 1258 1259 1228
-1299 3 2 0 7 1228 1259 1260 1229
-1300 3 2 0 7 1229 1260 1261 1230
-1301 3 2 0 7 1230 1261 1262 1231
-1302 3 2 0 7 1231 1262 1263 1232
-1303 3 2 0 7 1232 1263 1264 1233
-1304 3 2 0 7 1233 1264 1265 1234
-1305 3 2 0 7 1234 1265 1266 1235
-1306 3 2 0 7 1235 1266 1267 1236
-1307 3 2 0 7 1236 1267 1268 1237
-1308 3 2 0 7 1237 1268 1269 1238
-1309 3 2 0 7 1238 1269 1270 1239
-1310 3 2 0 7 1239 1270 1271 1240
-1311 3 2 0 7 1240 1271 1272 1241
-1312 3 2 0 7 1241 1272 1273 1242
-1313 3 2 0 7 1242 1273 1274 1243
-1314 3 2 0 7 1243 1274 1275 1244
-1315 3 2 0 7 1244 1275 1276 1245
-1316 3 2 0 7 1245 1276 94 95
-1317 3 2 0 7 40 41 1277 1246
-1318 3 2 0 7 1246 1277 1278 1247
-1319 3 2 0 7 1247 1278 1279 1248
-1320 3 2 0 7 1248 1279 1280 1249
-1321 3 2 0 7 1249 1280 1281 1250
-1322 3 2 0 7 1250 1281 1282 1251
-1323 3 2 0 7 1251 1282 1283 1252
-1324 3 2 0 7 1252 1283 1284 1253
-1325 3 2 0 7 1253 1284 1285 1254
-1326 3 2 0 7 1254 1285 1286 1255
-1327 3 2 0 7 1255 1286 1287 1256
-1328 3 2 0 7 1256 1287 1288 1257
-1329 3 2 0 7 1257 1288 1289 1258
-1330 3 2 0 7 1258 1289 1290 1259
-1331 3 2 0 7 1259 1290 1291 1260
-1332 3 2 0 7 1260 1291 1292 1261
-1333 3 2 0 7 1261 1292 1293 1262
-1334 3 2 0 7 1262 1293 1294 1263
-1335 3 2 0 7 1263 1294 1295 1264
-1336 3 2 0 7 1264 1295 1296 1265
-1337 3 2 0 7 1265 1296 1297 1266
-1338 3 2 0 7 1266 1297 1298 1267
-1339 3 2 0 7 1267 1298 1299 1268
-1340 3 2 0 7 1268 1299 1300 1269
-1341 3 2 0 7 1269 1300 1301 1270
-1342 3 2 0 7 1270 1301 1302 1271
-1343 3 2 0 7 1271 1302 1303 1272
-1344 3 2 0 7 1272 1303 1304 1273
-1345 3 2 0 7 1273 1304 1305 1274
-1346 3 2 0 7 1274 1305 1306 1275
-1347 3 2 0 7 1275 1306 1307 1276
-1348 3 2 0 7 1276 1307 93 94
-1349 3 2 0 7 41 42 1308 1277
-1350 3 2 0 7 1277 1308 1309 1278
-1351 3 2 0 7 1278 1309 1310 1279
-1352 3 2 0 7 1279 1310 1311 1280
-1353 3 2 0 7 1280 1311 1312 1281
-1354 3 2 0 7 1281 1312 1313 1282
-1355 3 2 0 7 1282 1313 1314 1283
-1356 3 2 0 7 1283 1314 1315 1284
-1357 3 2 0 7 1284 1315 1316 1285
-1358 3 2 0 7 1285 1316 1317 1286
-1359 3 2 0 7 1286 1317 1318 1287
-1360 3 2 0 7 1287 1318 1319 1288
-1361 3 2 0 7 1288 1319 1320 1289
-1362 3 2 0 7 1289 1320 1321 1290
-1363 3 2 0 7 1290 1321 1322 1291
-1364 3 2 0 7 1291 1322 1323 1292
-1365 3 2 0 7 1292 1323 1324 1293
-1366 3 2 0 7 1293 1324 1325 1294
-1367 3 2 0 7 1294 1325 1326 1295
-1368 3 2 0 7 1295 1326 1327 1296
-1369 3 2 0 7 1296 1327 1328 1297
-1370 3 2 0 7 1297 1328 1329 1298
-1371 3 2 0 7 1298 1329 1330 1299
-1372 3 2 0 7 1299 1330 1331 1300
-1373 3 2 0 7 1300 1331 1332 1301
-1374 3 2 0 7 1301 1332 1333 1302
-1375 3 2 0 7 1302 1333 1334 1303
-1376 3 2 0 7 1303 1334 1335 1304
-1377 3 2 0 7 1304 1335 1336 1305
-1378 3 2 0 7 1305 1336 1337 1306
-1379 3 2 0 7 1306 1337 1338 1307
-1380 3 2 0 7 1307 1338 92 93
-1381 3 2 0 7 42 43 1339 1308
-1382 3 2 0 7 1308 1339 1340 1309
-1383 3 2 0 7 1309 1340 1341 1310
-1384 3 2 0 7 1310 1341 1342 1311
-1385 3 2 0 7 1311 1342 1343 1312
-1386 3 2 0 7 1312 1343 1344 1313
-1387 3 2 0 7 1313 1344 1345 1314
-1388 3 2 0 7 1314 1345 1346 1315
-1389 3 2 0 7 1315 1346 1347 1316
-1390 3 2 0 7 1316 1347 1348 1317
-1391 3 2 0 7 1317 1348 1349 1318
-1392 3 2 0 7 1318 1349 1350 1319
-1393 3 2 0 7 1319 1350 1351 1320
-1394 3 2 0 7 1320 1351 1352 1321
-1395 3 2 0 7 1321 1352 1353 1322
-1396 3 2 0 7 1322 1353 1354 1323
-1397 3 2 0 7 1323 1354 1355 1324
-1398 3 2 0 7 1324 1355 1356 1325
-1399 3 2 0 7 1325 1356 1357 1326
-1400 3 2 0 7 1326 1357 1358 1327
-1401 3 2 0 7 1327 1358 1359 1328
-1402 3 2 0 7 1328 1359 1360 1329
-1403 3 2 0 7 1329 1360 1361 1330
-1404 3 2 0 7 1330 1361 1362 1331
-1405 3 2 0 7 1331 1362 1363 1332
-1406 3 2 0 7 1332 1363 1364 1333
-1407 3 2 0 7 1333 1364 1365 1334
-1408 3 2 0 7 1334 1365 1366 1335
-1409 3 2 0 7 1335 1366 1367 1336
-1410 3 2 0 7 1336 1367 1368 1337
-1411 3 2 0 7 1337 1368 1369 1338
-1412 3 2 0 7 1338 1369 91 92
-1413 3 2 0 7 43 44 1370 1339
-1414 3 2 0 7 1339 1370 1371 1340
-1415 3 2 0 7 1340 1371 1372 1341
-1416 3 2 0 7 1341 1372 1373 1342
-1417 3 2 0 7 1342 1373 1374 1343
-1418 3 2 0 7 1343 1374 1375 1344
-1419 3 2 0 7 1344 1375 1376 1345
-1420 3 2 0 7 1345 1376 1377 1346
-1421 3 2 0 7 1346 1377 1378 1347
-1422 3 2 0 7 1347 1378 1379 1348
-1423 3 2 0 7 1348 1379 1380 1349
-1424 3 2 0 7 1349 1380 1381 1350
-1425 3 2 0 7 1350 1381 1382 1351
-1426 3 2 0 7 1351 1382 1383 1352
-1427 3 2 0 7 1352 1383 1384 1353
-1428 3 2 0 7 1353 1384 1385 1354
-1429 3 2 0 7 1354 1385 1386 1355
-1430 3 2 0 7 1355 1386 1387 1356
-1431 3 2 0 7 1356 1387 1388 1357
-1432 3 2 0 7 1357 1388 1389 1358
-1433 3 2 0 7 1358 1389 1390 1359
-1434 3 2 0 7 1359 1390 1391 1360
-1435 3 2 0 7 1360 1391 1392 1361
-1436 3 2 0 7 1361 1392 1393 1362
-1437 3 2 0 7 1362 1393 1394 1363
-1438 3 2 0 7 1363 1394 1395 1364
-1439 3 2 0 7 1364 1395 1396 1365
-1440 3 2 0 7 1365 1396 1397 1366
-1441 3 2 0 7 1366 1397 1398 1367
-1442 3 2 0 7 1367 1398 1399 1368
-1443 3 2 0 7 1368 1399 1400 1369
-1444 3 2 0 7 1369 1400 90 91
-1445 3 2 0 7 44 45 1401 1370
-1446 3 2 0 7 1370 1401 1402 1371
-1447 3 2 0 7 1371 1402 1403 1372
-1448 3 2 0 7 1372 1403 1404 1373
-1449 3 2 0 7 1373 1404 1405 1374
-1450 3 2 0 7 1374 1405 1406 1375
-1451 3 2 0 7 1375 1406 1407 1376
-1452 3 2 0 7 1376 1407 1408 1377
-1453 3 2 0 7 1377 1408 1409 1378
-1454 3 2 0 7 1378 1409 1410 1379
-1455 3 2 0 7 1379 1410 1411 1380
-1456 3 2 0 7 1380 1411 1412 1381
-1457 3 2 0 7 1381 1412 1413 1382
-1458 3 2 0 7 1382 1413 1414 1383
-1459 3 2 0 7 1383 1414 1415 1384
-1460 3 2 0 7 1384 1415 1416 1385
-1461 3 2 0 7 1385 1416 1417 1386
-1462 3 2 0 7 1386 1417 1418 1387
-1463 3 2 0 7 1387 1418 1419 1388
-1464 3 2 0 7 1388 1419 1420 1389
-1465 3 2 0 7 1389 1420 1421 1390
-1466 3 2 0 7 1390 1421 1422 1391
-1467 3 2 0 7 1391 1422 1423 1392
-1468 3 2 0 7 1392 1423 1424 1393
-1469 3 2 0 7 1393 1424 1425 1394
-1470 3 2 0 7 1394 1425 1426 1395
-1471 3 2 0 7 1395 1426 1427 1396
-1472 3 2 0 7 1396 1427 1428 1397
-1473 3 2 0 7 1397 1428 1429 1398
-1474 3 2 0 7 1398 1429 1430 1399
-1475 3 2 0 7 1399 1430 1431 1400
-1476 3 2 0 7 1400 1431 89 90
-1477 3 2 0 7 45 46 1432 1401
-1478 3 2 0 7 1401 1432 1433 1402
-1479 3 2 0 7 1402 1433 1434 1403
-1480 3 2 0 7 1403 1434 1435 1404
-1481 3 2 0 7 1404 1435 1436 1405
-1482 3 2 0 7 1405 1436 1437 1406
-1483 3 2 0 7 1406 1437 1438 1407
-1484 3 2 0 7 1407 1438 1439 1408
-1485 3 2 0 7 1408 1439 1440 1409
-1486 3 2 0 7 1409 1440 1441 1410
-1487 3 2 0 7 1410 1441 1442 1411
-1488 3 2 0 7 1411 1442 1443 1412
-1489 3 2 0 7 1412 1443 1444 1413
-1490 3 2 0 7 1413 1444 1445 1414
-1491 3 2 0 7 1414 1445 1446 1415
-1492 3 2 0 7 1415 1446 1447 1416
-1493 3 2 0 7 1416 1447 1448 1417
-1494 3 2 0 7 1417 1448 1449 1418
-1495 3 2 0 7 1418 1449 1450 1419
-1496 3 2 0 7 1419 1450 1451 1420
-1497 3 2 0 7 1420 1451 1452 1421
-1498 3 2 0 7 1421 1452 1453 1422
-1499 3 2 0 7 1422 1453 1454 1423
-1500 3 2 0 7 1423 1454 1455 1424
-1501 3 2 0 7 1424 1455 1456 1425
-1502 3 2 0 7 1425 1456 1457 1426
-1503 3 2 0 7 1426 1457 1458 1427
-1504 3 2 0 7 1427 1458 1459 1428
-1505 3 2 0 7 1428 1459 1460 1429
-1506 3 2 0 7 1429 1460 1461 1430
-1507 3 2 0 7 1430 1461 1462 1431
-1508 3 2 0 7 1431 1462 88 89
-1509 3 2 0 7 46 47 1463 1432
-1510 3 2 0 7 1432 1463 1464 1433
-1511 3 2 0 7 1433 1464 1465 1434
-1512 3 2 0 7 1434 1465 1466 1435
-1513 3 2 0 7 1435 1466 1467 1436
-1514 3 2 0 7 1436 1467 1468 1437
-1515 3 2 0 7 1437 1468 1469 1438
-1516 3 2 0 7 1438 1469 1470 1439
-1517 3 2 0 7 1439 1470 1471 1440
-1518 3 2 0 7 1440 1471 1472 1441
-1519 3 2 0 7 1441 1472 1473 1442
-1520 3 2 0 7 1442 1473 1474 1443
-1521 3 2 0 7 1443 1474 1475 1444
-1522 3 2 0 7 1444 1475 1476 1445
-1523 3 2 0 7 1445 1476 1477 1446
-1524 3 2 0 7 1446 1477 1478 1447
-1525 3 2 0 7 1447 1478 1479 1448
-1526 3 2 0 7 1448 1479 1480 1449
-1527 3 2 0 7 1449 1480 1481 1450
-1528 3 2 0 7 1450 1481 1482 1451
-1529 3 2 0 7 1451 1482 1483 1452
-1530 3 2 0 7 1452 1483 1484 1453
-1531 3 2 0 7 1453 1484 1485 1454
-1532 3 2 0 7 1454 1485 1486 1455
-1533 3 2 0 7 1455 1486 1487 1456
-1534 3 2 0 7 1456 1487 1488 1457
-1535 3 2 0 7 1457 1488 1489 1458
-1536 3 2 0 7 1458 1489 1490 1459
-1537 3 2 0 7 1459 1490 1491 1460
-1538 3 2 0 7 1460 1491 1492 1461
-1539 3 2 0 7 1461 1492 1493 1462
-1540 3 2 0 7 1462 1493 87 88
-1541 3 2 0 7 47 48 1494 1463
-1542 3 2 0 7 1463 1494 1495 1464
-1543 3 2 0 7 1464 1495 1496 1465
-1544 3 2 0 7 1465 1496 1497 1466
-1545 3 2 0 7 1466 1497 1498 1467
-1546 3 2 0 7 1467 1498 1499 1468
-1547 3 2 0 7 1468 1499 1500 1469
-1548 3 2 0 7 1469 1500 1501 1470
-1549 3 2 0 7 1470 1501 1502 1471
-1550 3 2 0 7 1471 1502 1503 1472
-1551 3 2 0 7 1472 1503 1504 1473
-1552 3 2 0 7 1473 1504 1505 1474
-1553 3 2 0 7 1474 1505 1506 1475
-1554 3 2 0 7 1475 1506 1507 1476
-1555 3 2 0 7 1476 1507 1508 1477
-1556 3 2 0 7 1477 1508 1509 1478
-1557 3 2 0 7 1478 1509 1510 1479
-1558 3 2 0 7 1479 1510 1511 1480
-1559 3 2 0 7 1480 1511 1512 1481
-1560 3 2 0 7 1481 1512 1513 1482
-1561 3 2 0 7 1482 1513 1514 1483
-1562 3 2 0 7 1483 1514 1515 1484
-1563 3 2 0 7 1484 1515 1516 1485
-1564 3 2 0 7 1485 1516 1517 1486
-1565 3 2 0 7 1486 1517 1518 1487
-1566 3 2 0 7 1487 1518 1519 1488
-1567 3 2 0 7 1488 1519 1520 1489
-1568 3 2 0 7 1489 1520 1521 1490
-1569 3 2 0 7 1490 1521 1522 1491
-1570 3 2 0 7 1491 1522 1523 1492
-1571 3 2 0 7 1492 1523 1524 1493
-1572 3 2 0 7 1493 1524 86 87
-1573 3 2 0 7 48 49 1525 1494
-1574 3 2 0 7 1494 1525 1526 1495
-1575 3 2 0 7 1495 1526 1527 1496
-1576 3 2 0 7 1496 1527 1528 1497
-1577 3 2 0 7 1497 1528 1529 1498
-1578 3 2 0 7 1498 1529 1530 1499
-1579 3 2 0 7 1499 1530 1531 1500
-1580 3 2 0 7 1500 1531 1532 1501
-1581 3 2 0 7 1501 1532 1533 1502
-1582 3 2 0 7 1502 1533 1534 1503
-1583 3 2 0 7 1503 1534 1535 1504
-1584 3 2 0 7 1504 1535 1536 1505
-1585 3 2 0 7 1505 1536 1537 1506
-1586 3 2 0 7 1506 1537 1538 1507
-1587 3 2 0 7 1507 1538 1539 1508
-1588 3 2 0 7 1508 1539 1540 1509
-1589 3 2 0 7 1509 1540 1541 1510
-1590 3 2 0 7 1510 1541 1542 1511
-1591 3 2 0 7 1511 1542 1543 1512
-1592 3 2 0 7 1512 1543 1544 1513
-1593 3 2 0 7 1513 1544 1545 1514
-1594 3 2 0 7 1514 1545 1546 1515
-1595 3 2 0 7 1515 1546 1547 1516
-1596 3 2 0 7 1516 1547 1548 1517
-1597 3 2 0 7 1517 1548 1549 1518
-1598 3 2 0 7 1518 1549 1550 1519
-1599 3 2 0 7 1519 1550 1551 1520
-1600 3 2 0 7 1520 1551 1552 1521
-1601 3 2 0 7 1521 1552 1553 1522
-1602 3 2 0 7 1522 1553 1554 1523
-1603 3 2 0 7 1523 1554 1555 1524
-1604 3 2 0 7 1524 1555 85 86
-1605 3 2 0 7 49 50 1556 1525
-1606 3 2 0 7 1525 1556 1557 1526
-1607 3 2 0 7 1526 1557 1558 1527
-1608 3 2 0 7 1527 1558 1559 1528
-1609 3 2 0 7 1528 1559 1560 1529
-1610 3 2 0 7 1529 1560 1561 1530
-1611 3 2 0 7 1530 1561 1562 1531
-1612 3 2 0 7 1531 1562 1563 1532
-1613 3 2 0 7 1532 1563 1564 1533
-1614 3 2 0 7 1533 1564 1565 1534
-1615 3 2 0 7 1534 1565 1566 1535
-1616 3 2 0 7 1535 1566 1567 1536
-1617 3 2 0 7 1536 1567 1568 1537
-1618 3 2 0 7 1537 1568 1569 1538
-1619 3 2 0 7 1538 1569 1570 1539
-1620 3 2 0 7 1539 1570 1571 1540
-1621 3 2 0 7 1540 1571 1572 1541
-1622 3 2 0 7 1541 1572 1573 1542
-1623 3 2 0 7 1542 1573 1574 1543
-1624 3 2 0 7 1543 1574 1575 1544
-1625 3 2 0 7 1544 1575 1576 1545
-1626 3 2 0 7 1545 1576 1577 1546
-1627 3 2 0 7 1546 1577 1578 1547
-1628 3 2 0 7 1547 1578 1579 1548
-1629 3 2 0 7 1548 1579 1580 1549
-1630 3 2 0 7 1549 1580 1581 1550
-1631 3 2 0 7 1550 1581 1582 1551
-1632 3 2 0 7 1551 1582 1583 1552
-1633 3 2 0 7 1552 1583 1584 1553
-1634 3 2 0 7 1553 1584 1585 1554
-1635 3 2 0 7 1554 1585 1586 1555
-1636 3 2 0 7 1555 1586 84 85
-1637 3 2 0 7 50 51 1587 1556
-1638 3 2 0 7 1556 1587 1588 1557
-1639 3 2 0 7 1557 1588 1589 1558
-1640 3 2 0 7 1558 1589 1590 1559
-1641 3 2 0 7 1559 1590 1591 1560
-1642 3 2 0 7 1560 1591 1592 1561
-1643 3 2 0 7 1561 1592 1593 1562
-1644 3 2 0 7 1562 1593 1594 1563
-1645 3 2 0 7 1563 1594 1595 1564
-1646 3 2 0 7 1564 1595 1596 1565
-1647 3 2 0 7 1565 1596 1597 1566
-1648 3 2 0 7 1566 1597 1598 1567
-1649 3 2 0 7 1567 1598 1599 1568
-1650 3 2 0 7 1568 1599 1600 1569
-1651 3 2 0 7 1569 1600 1601 1570
-1652 3 2 0 7 1570 1601 1602 1571
-1653 3 2 0 7 1571 1602 1603 1572
-1654 3 2 0 7 1572 1603 1604 1573
-1655 3 2 0 7 1573 1604 1605 1574
-1656 3 2 0 7 1574 1605 1606 1575
-1657 3 2 0 7 1575 1606 1607 1576
-1658 3 2 0 7 1576 1607 1608 1577
-1659 3 2 0 7 1577 1608 1609 1578
-1660 3 2 0 7 1578 1609 1610 1579
-1661 3 2 0 7 1579 1610 1611 1580
-1662 3 2 0 7 1580 1611 1612 1581
-1663 3 2 0 7 1581 1612 1613 1582
-1664 3 2 0 7 1582 1613 1614 1583
-1665 3 2 0 7 1583 1614 1615 1584
-1666 3 2 0 7 1584 1615 1616 1585
-1667 3 2 0 7 1585 1616 1617 1586
-1668 3 2 0 7 1586 1617 83 84
-1669 3 2 0 7 51 3 52 1587
-1670 3 2 0 7 1587 52 53 1588
-1671 3 2 0 7 1588 53 54 1589
-1672 3 2 0 7 1589 54 55 1590
-1673 3 2 0 7 1590 55 56 1591
-1674 3 2 0 7 1591 56 57 1592
-1675 3 2 0 7 1592 57 58 1593
-1676 3 2 0 7 1593 58 59 1594
-1677 3 2 0 7 1594 59 60 1595
-1678 3 2 0 7 1595 60 61 1596
-1679 3 2 0 7 1596 61 62 1597
-1680 3 2 0 7 1597 62 63 1598
-1681 3 2 0 7 1598 63 64 1599
-1682 3 2 0 7 1599 64 65 1600
-1683 3 2 0 7 1600 65 66 1601
-1684 3 2 0 7 1601 66 67 1602
-1685 3 2 0 7 1602 67 68 1603
-1686 3 2 0 7 1603 68 69 1604
-1687 3 2 0 7 1604 69 70 1605
-1688 3 2 0 7 1605 70 71 1606
-1689 3 2 0 7 1606 71 72 1607
-1690 3 2 0 7 1607 72 73 1608
-1691 3 2 0 7 1608 73 74 1609
-1692 3 2 0 7 1609 74 75 1610
-1693 3 2 0 7 1610 75 76 1611
-1694 3 2 0 7 1611 76 77 1612
-1695 3 2 0 7 1612 77 78 1613
-1696 3 2 0 7 1613 78 79 1614
-1697 3 2 0 7 1614 79 80 1615
-1698 3 2 0 7 1615 80 81 1616
-1699 3 2 0 7 1616 81 82 1617
-1700 3 2 0 7 1617 82 2 83
-$EndElements
diff --git a/test/porousmediumflow/2p/implicit/incompressible/problem.hh b/test/porousmediumflow/2p/implicit/incompressible/problem.hh
index 25030f51616406645395da2ee8f4bccd20fe7fc3..5acd0b3f31ffef9bcaf7ab55b1cc8cb560f90821 100644
--- a/test/porousmediumflow/2p/implicit/incompressible/problem.hh
+++ b/test/porousmediumflow/2p/implicit/incompressible/problem.hh
@@ -20,8 +20,8 @@
* \file
* \brief The properties for the incompressible test
*/
-#ifndef DUMUX_INCOMPRESSIBLE_ONEP_TEST_PROBLEM_HH
-#define DUMUX_INCOMPRESSIBLE_ONEP_TEST_PROBLEM_HH
+#ifndef DUMUX_INCOMPRESSIBLE_TWOP_TEST_PROBLEM_HH
+#define DUMUX_INCOMPRESSIBLE_TWOP_TEST_PROBLEM_HH
#include <dumux/discretization/box/properties.hh>
#include <dumux/discretization/cellcentered/tpfa/properties.hh>
@@ -29,6 +29,8 @@
#include <dumux/material/components/dnapl.hh>
#include <dumux/material/components/simpleh2o.hh>
+#include <dumux/material/fluidsystems/liquidphase.hh>
+#include <dumux/material/fluidsystems/2pimmiscible.hh>
#include <dumux/porousmediumflow/problem.hh>
#include <dumux/porousmediumflow/2p/implicit/model.hh>
diff --git a/test/porousmediumflow/2p/implicit/incompressible/spatialparams.hh b/test/porousmediumflow/2p/implicit/incompressible/spatialparams.hh
index 4867db01ce86ab5cf5448cb0f3adedfa477b7f59..6ce0becd8a63f920a5c6cc0d22853d7b8aea19c5 100644
--- a/test/porousmediumflow/2p/implicit/incompressible/spatialparams.hh
+++ b/test/porousmediumflow/2p/implicit/incompressible/spatialparams.hh
@@ -100,13 +100,19 @@ public:
}
/*!
- * \brief Returns the scalar intrinsic permeability \f$[m^2]\f$
+ * \brief Function for defining the (intrinsic) permeability \f$[m^2]\f$.
+ * In this test, we use element-wise distributed permeabilities.
*
- * \param globalPos The global position
+ * \param element The current element
+ * \param scv The sub-control volume inside the element.
+ * \param elemSol The solution at the dofs connected to the element.
+ * \return permeability
*/
- Scalar permeabilityAtPos(const GlobalPosition& globalPos) const
+ PermeabilityType permeability(const Element& element,
+ const SubControlVolume& scv,
+ const ElementSolutionVector& elemSol) const
{
- if (isInLens_(globalPos))
+ if (isInLens_(element.geometry().center()))
return lensK_;
return outerK_;
}
@@ -120,13 +126,19 @@ public:
{ return 0.4; }
/*!
- * \brief Returns the parameter object for the Brooks-Corey material law
+ * \brief Returns the parameter object for the Brooks-Corey material law.
+ * In this test, we use element-wise distributed material parameters.
*
- * \param globalPos The global position
+ * \param element The current element
+ * \param scv The sub-control volume inside the element.
+ * \param elemSol The solution at the dofs connected to the element.
+ * \return the material parameters object
*/
- const MaterialLawParams& materialLawParamsAtPos(const GlobalPosition& globalPos) const
+ const MaterialLawParams& materialLawParams(const Element& element,
+ const SubControlVolume& scv,
+ const ElementSolutionVector& elemSol) const
{
- if (isInLens_(globalPos))
+ if (isInLens_(element.geometry().center()))
return lensMaterialParams_;
return outerMaterialParams_;
}
diff --git a/test/porousmediumflow/2p/implicit/pointsources/CMakeLists.txt b/test/porousmediumflow/2p/implicit/pointsources/CMakeLists.txt
deleted file mode 100644
index 5124037a1f1229b477346f372b954971260a59f0..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/pointsources/CMakeLists.txt
+++ /dev/null
@@ -1,12 +0,0 @@
-add_dumux_test(test_ccadaptive2ppointsource test_ccadaptive2ppointsource test_ccadaptive2ppointsource.cc
- python ${CMAKE_SOURCE_DIR}/bin/testing/runtest.py
- --script fuzzy
- --files ${CMAKE_SOURCE_DIR}/test/references/lensccadaptivepointsource-reference.vtu
- ${CMAKE_CURRENT_BINARY_DIR}/lensccadaptive-00010.vtu
- --command "${CMAKE_CURRENT_BINARY_DIR}/test_ccadaptive2ppointsource")
-
-#install sources
-install(FILES
-lensproblem.hh
-test_ccadaptive2ppointsource.cc
-DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/dumux/test/implicit/2p/pointsources)
diff --git a/test/porousmediumflow/2p/implicit/pointsources/lensproblem.hh b/test/porousmediumflow/2p/implicit/pointsources/lensproblem.hh
deleted file mode 100644
index 69c1178fa56425ee2e2c29e41c54de742135bd4d..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/pointsources/lensproblem.hh
+++ /dev/null
@@ -1,132 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-/*!
- * \file
- *
- * \brief Soil contamination problem where DNAPL infiltrates a fully
- * water saturated medium.
- */
-
-#ifndef DUMUX_LENSPROBLEM_POINTSOURCE_HH
-#define DUMUX_LENSPROBLEM_POINTSOURCE_HH
-
-#include "../lensproblem.hh"
-
-#if HAVE_UG
-namespace Dumux
-{
-template <class TypeTag>
-class LensProblemPointSource;
-
-//////////
-// Specify the properties for the lens problem
-//////////
-namespace Properties
-{
-NEW_TYPE_TAG(LensProblemPointSource, INHERITS_FROM(LensCCAdaptiveProblem));
-NEW_PROP_TAG(BaseProblem);
-SET_TYPE_PROP(LensProblemPointSource, BaseProblem, ImplicitPorousMediaProblem<TypeTag>);
-SET_BOOL_PROP(LensProblemPointSource, AdaptiveGrid, true);
-SET_TYPE_PROP(LensProblemPointSource, AdaptionIndicator, TwoPImplicitGridAdaptIndicator<TypeTag>);
-SET_TYPE_PROP(LensProblemPointSource, AdaptionInitializationIndicator, ImplicitGridAdaptInitializationIndicator<TypeTag>);
-SET_TYPE_PROP(LensProblemPointSource, Grid, Dune::UGGrid<2>);
-SET_TYPE_PROP(LensProblemPointSource, Problem, LensProblemPointSource<TypeTag>);
-}
-
-/*!
- * \ingroup TwoPModel
- * \ingroup ImplicitTestProblems
- * \brief Soil contamination problem where DNAPL infiltrates a fully
- * water saturated medium.
- *
- * The domain is sized 6m times 4m and features a rectangular lens
- * with low permeablility which spans from (1 m , 2 m) to (4 m, 3 m)
- * and is surrounded by a medium with higher permability. Note that
- * this problem is discretized using only two dimensions, so from the
- * point of view of the two-phase model, the depth of the domain
- * implicitly is 1 m everywhere.
- *
- * On the top and the bottom of the domain neumann boundary conditions
- * are used, while dirichlet conditions apply on the left and right
- * boundaries.
- *
- * DNAPL is injected at the top boundary from 3m to 4m at a rate of
- * 0.04 kg/(s m^2), the remaining neumann boundaries are no-flow
- * boundaries.
- *
- * The dirichlet boundaries on the left boundary is the hydrostatic
- * pressure scaled by a factor of 1.125, while on the right side it is
- * just the hydrostatic pressure. The DNAPL saturation on both sides
- * is zero.
- *
- * This problem uses the \ref TwoPModel.
- *
- * This problem should typically be simulated until \f$t_{\text{end}}
- * \approx 20\,000\;s\f$ is reached. A good choice for the initial time step
- * size is \f$t_{\text{inital}} = 250\;s\f$.
- *
- * To run the simulation execute the following line in shell:
- * <tt>./test_box2p -parameterFile test_box2p.input</tt> or
- * <tt>./test_cc2p -parameterFile test_cc2p.input</tt>
- */
-template <class TypeTag >
-class LensProblemPointSource : public LensProblem<TypeTag>
-{
- typedef LensProblem<TypeTag> ParentType;
- typedef typename GET_PROP_TYPE(TypeTag, GridView) GridView;
- typedef typename GET_PROP_TYPE(TypeTag, Indices) Indices;
- typedef typename GET_PROP_TYPE(TypeTag, Scalar) Scalar;
- typedef typename GET_PROP_TYPE(TypeTag, PointSource) PointSource;
- typedef typename GET_PROP_TYPE(TypeTag, TimeManager) TimeManager;
-
-public:
- /*!
- * \brief The constructor
- *
- * \param timeManager The time manager
- * \param gridView The grid view
- */
- LensProblemPointSource(TimeManager &timeManager, const GridView &gridView)
- : ParentType(timeManager, gridView)
- {}
-
- /*!
- * \brief Applies a vector of point sources. The point sources
- * are possibly solution dependent.
- *
- * \param pointSources A vector of PointSource s that contain
- source values for all phases and space positions.
- *
- * For this method, the \a values method of the point source
- * has to return the absolute mass rate in untis
- * \f$ [ \textnormal{unit of conserved quantity} / s ] \f$.
- * Positive values mean that mass is created, negative ones mean that it vanishes.
- */
- void addPointSources(std::vector<PointSource>& pointSources) const
- {
- // inject 2 kg/s of non-wetting phase at position (1, 1);
- pointSources.push_back(PointSource({0.502, 3.02}, {0, 0.1}));
- }
-};
-
-} //end namespace
-
-#endif // HAVE_UG
-
-#endif
diff --git a/test/porousmediumflow/2p/implicit/pointsources/test_ccadaptive2ppointsource.cc b/test/porousmediumflow/2p/implicit/pointsources/test_ccadaptive2ppointsource.cc
deleted file mode 100644
index 36c0cd2c97865af6474e8ec70428c49e1004a563..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/pointsources/test_ccadaptive2ppointsource.cc
+++ /dev/null
@@ -1,74 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-/*!
- * \file
- *
- * \brief Test for the two-phase CC model with point source
- */
-#include <config.h>
-#if HAVE_UG
-#include "lensproblem.hh"
-#endif
-#include <dumux/common/start.hh>
-
-/*!
- * \brief Provides an interface for customizing error messages associated with
- * reading in parameters.
- *
- * \param progName The name of the program, that was tried to be started.
- * \param errorMsg The error message that was issued by the start function.
- * Comprises the thing that went wrong and a general help message.
- */
-void usage(const char *progName, const std::string &errorMsg)
-{
- if (errorMsg.size() > 0) {
- std::string errorMessageOut = "\nUsage: ";
- errorMessageOut += progName;
- errorMessageOut += " [options]\n";
- errorMessageOut += errorMsg;
- errorMessageOut += "\n\nThe list of mandatory options for this program is:\n"
- "\t-TimeManager.TEnd End of the simulation [s] \n"
- "\t-TimeManager.DtInitial Initial timestep size [s] \n"
- "\t-Grid.File Name of the file containing the grid \n"
- "\t definition in DGF format\n"
- "\t-SpatialParams.LensLowerLeft coordinates of the lower left corner of the lens [m] \n"
- "\t-SpatialParams.LensUpperRight coordinates of the upper right corner of the lens [m] \n"
- "\t-Problem.Name String for naming of the output files \n"
- "\n";
-
- std::cout << errorMessageOut << std::endl;
- }
-}
-
-////////////////////////
-// the main function
-////////////////////////
-int main(int argc, char** argv)
-{
-
-#if HAVE_UG
- typedef TTAG(LensProblemPointSource) TypeTag;
- return Dumux::start<TypeTag>(argc, argv, usage);
-#else
-#warning You need UGGrid to run this test.
- std::cerr << "You need UGGrid to run this test." << std::endl;
- return 77;
-#endif
-
-}
diff --git a/test/porousmediumflow/2p/implicit/pointsources/test_ccadaptive2ppointsource.input b/test/porousmediumflow/2p/implicit/pointsources/test_ccadaptive2ppointsource.input
deleted file mode 100644
index 1047a2871e3b617b29ba6cb62fdd42c8d77b70cf..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/pointsources/test_ccadaptive2ppointsource.input
+++ /dev/null
@@ -1,28 +0,0 @@
-[TimeManager]
-DtInitial = 25 # [s]
-TEnd = 500 # [s]
-
-[Grid]
-LowerLeft = 0 0
-UpperRight = 6 4
-Cells = 48 32
-
-[SpatialParams]
-LensLowerLeft = 1.0 2.0 # [m] coordinates of the lower left lens corner
-LensUpperRight = 4.0 3.0 # [m] coordinate of the upper right lens corner
-
-[Problem]
-Name = lensccadaptive # name passed to the output routines
-
-[Implicit]
-EnablePartialReassemble = 1 # enable partial reassembly of the jacobian matrix?
-EnableJacobianRecycling = 1 # Enable reuse of jacobian matrices?
-
-[GridAdapt]
-EnableInitializationIndicator = 1
-RefineAtDirichletBC = 1
-RefineAtFluxBC = 1
-MinLevel = 0
-MaxLevel = 2
-CoarsenTolerance = 1.0e-4
-RefineTolerance = 1.0e-4
diff --git a/test/porousmediumflow/2p/implicit/test_boxadaptive2p.cc b/test/porousmediumflow/2p/implicit/test_boxadaptive2p.cc
deleted file mode 100644
index f560ef63065654a602e76d729e23319ebc13c110..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/test_boxadaptive2p.cc
+++ /dev/null
@@ -1,70 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-/*!
- * \file
- *
- * \brief Test for the two-phase box model
- */
-#include <config.h>
-#include "lensproblem.hh"
-#include <dumux/common/start.hh>
-
-/*!
- * \brief Provides an interface for customizing error messages associated with
- * reading in parameters.
- *
- * \param progName The name of the program, that was tried to be started.
- * \param errorMsg The error message that was issued by the start function.
- * Comprises the thing that went wrong and a general help message.
- */
-void usage(const char *progName, const std::string &errorMsg)
-{
- if (errorMsg.size() > 0) {
- std::string errorMessageOut = "\nUsage: ";
- errorMessageOut += progName;
- errorMessageOut += " [options]\n";
- errorMessageOut += errorMsg;
- errorMessageOut += "\n\nThe list of mandatory options for this program is:\n"
- "\t-TimeManager.TEnd End of the simulation [s] \n"
- "\t-TimeManager.DtInitial Initial timestep size [s] \n"
- "\t-Grid.File Name of the file containing the grid \n"
- "\t definition in DGF format\n"
- "\t-SpatialParams.LensLowerLeft coordinates of the lower left corner of the lens [m] \n"
- "\t-SpatialParams.LensUpperRight coordinates of the upper right corner of the lens [m] \n"
- "\t-Problem.Name String for naming of the output files \n"
- "\n";
-
- std::cout << errorMessageOut << std::endl;
- }
-}
-
-////////////////////////
-// the main function
-////////////////////////
-int main(int argc, char** argv)
-{
-#if HAVE_UG
- typedef TTAG(LensBoxAdaptiveProblem) TypeTag;
- return Dumux::start<TypeTag>(argc, argv, usage);
-#else
-#warning You need UGGrid to run this test.
- std::cerr << "You need UGGrid to run this test." << std::endl;
- return 77;
-#endif
-}
diff --git a/test/porousmediumflow/2p/implicit/test_boxadaptive2p.input b/test/porousmediumflow/2p/implicit/test_boxadaptive2p.input
deleted file mode 100644
index ff185bdc7ca3c38f1df59a5a962291f21ba25e57..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/test_boxadaptive2p.input
+++ /dev/null
@@ -1,31 +0,0 @@
-[TimeManager]
-DtInitial = 250 # [s]
-TEnd = 3000 # [s]
-
-[Grid]
-LowerLeft = 0 0
-UpperRight = 6 4
-Cells = 48 32
-Refinement = 0
-CellType = Cube
-ClosureType = Green
-
-[SpatialParams]
-LensLowerLeft = 1.0 2.0 # [m] coordinates of the lower left lens corner
-LensUpperRight = 4.0 3.0 # [m] coordinates of the upper right lens corner
-
-[Problem]
-Name = lensboxadaptive # name passed to the output routines
-
-[Implicit]
-EnablePartialReassemble = 1 # enable partial reassembly of the jacobian matrix?
-EnableJacobianRecycling = 1 # Enable reuse of jacobian matrices?
-
-[GridAdapt]
-EnableInitializationIndicator = 1
-RefineAtDirichletBC = 1
-RefineAtFluxBC = 1
-MinLevel = 0
-MaxLevel = 2
-CoarsenTolerance = 1.0e-4
-RefineTolerance = 1.0e-4
\ No newline at end of file
diff --git a/test/porousmediumflow/2p/implicit/test_cc2pcornerpoint.cc b/test/porousmediumflow/2p/implicit/test_cc2pcornerpoint.cc
deleted file mode 100644
index ba154429ce438c6b799f28f7a753848790ee6580..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/test_cc2pcornerpoint.cc
+++ /dev/null
@@ -1,75 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-/*!
- * \file
- *
- * \brief Test for the fully-implicit two-phase cell-centered model that uses
- * a cornerpoint grid.
- */
-#include <config.h>
-
-#if HAVE_OPM_GRID
-
-#include "cc2pcornerpointproblem.hh"
-#include <dumux/common/start.hh>
-
-/*!
- * \brief Provides an interface for customizing error messages associated with
- * reading in parameters.
- *
- * \param progName The name of the program, that was tried to be started.
- * \param errorMsg The error message that was issued by the start function.
- * Comprises the thing that went wrong and a general help message.
- */
-void usage(const char *progName, const std::string &errorMsg)
-{
- if (errorMsg.size() > 0) {
- std::string errorMessageOut = "\nUsage: ";
- errorMessageOut += progName;
- errorMessageOut += " [options]\n";
- errorMessageOut += errorMsg;
- errorMessageOut += "\n\nThe list of mandatory options for this program is:\n"
- "\t-TimeManager.TEnd End of the simulation [s] \n"
- "\t-TimeManager.DtInitial Initial timestep size [s] \n"
- "\t-Grid.File Name of the file containing the grid \n"
- "\t definition in Petrel/Eclipse format\n"
- "\t-Problem.Name String for naming of the output files \n"
- "\n";
-
- std::cout << errorMessageOut << std::endl;
- }
-}
-
-////////////////////////
-// the main function
-////////////////////////
-int main(int argc, char** argv)
-{
- typedef TTAG(CC2PCornerPointProblem) TypeTag;
- return Dumux::start<TypeTag>(argc, argv, usage);
-}
-#else
-#include<iostream>
-int main(int argc, char** argv)
-{
-#warning You need to have opm-grid installed to run this test
- std::cerr << "You need to have opm-grid installed to run this test\n";
- return 77;
-}
-#endif
diff --git a/test/porousmediumflow/2p/implicit/test_cc2pcornerpoint.input b/test/porousmediumflow/2p/implicit/test_cc2pcornerpoint.input
deleted file mode 100644
index 19f0f5f6bd479f5ba1d4bd242ed17a420bb38ffb..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/test_cc2pcornerpoint.input
+++ /dev/null
@@ -1,12 +0,0 @@
-[TimeManager]
-DtInitial = 1e3 # [s]
-TEnd = 1e4 # [s]
-
-[Grid]
-File = ./grids/hardsmall.grdecl
-
-[Problem]
-Name = cc2pcornerpoint # name passed to the output routines
-Homogeneous = 0 # use a homogeneous permeablity/porosity distribution
-InjectionElement = 0 # index of the element where injection should take place
-InjectionRate = 0.1 # injection rate in kg/s
diff --git a/test/porousmediumflow/2p/implicit/test_ccadaptive2p.cc b/test/porousmediumflow/2p/implicit/test_ccadaptive2p.cc
deleted file mode 100644
index 06912047125e6203dcd05fee13e665cb6a16a95c..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/test_ccadaptive2p.cc
+++ /dev/null
@@ -1,72 +0,0 @@
-// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
-// vi: set et ts=4 sw=4 sts=4:
-/*****************************************************************************
- * See the file COPYING for full copying permissions. *
- * *
- * This program is free software: you can redistribute it and/or modify *
- * it under the terms of the GNU General Public License as published by *
- * the Free Software Foundation, either version 2 of the License, or *
- * (at your option) any later version. *
- * *
- * This program is distributed in the hope that it will be useful, *
- * but WITHOUT ANY WARRANTY; without even the implied warranty of *
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
- * GNU General Public License for more details. *
- * *
- * You should have received a copy of the GNU General Public License *
- * along with this program. If not, see <http://www.gnu.org/licenses/>. *
- *****************************************************************************/
-/*!
- * \file
- *
- * \brief Test for the two-phase CC model
- */
-#include <config.h>
-#include "lensproblem.hh"
-#include <dumux/common/start.hh>
-
-/*!
- * \brief Provides an interface for customizing error messages associated with
- * reading in parameters.
- *
- * \param progName The name of the program, that was tried to be started.
- * \param errorMsg The error message that was issued by the start function.
- * Comprises the thing that went wrong and a general help message.
- */
-void usage(const char *progName, const std::string &errorMsg)
-{
- if (errorMsg.size() > 0) {
- std::string errorMessageOut = "\nUsage: ";
- errorMessageOut += progName;
- errorMessageOut += " [options]\n";
- errorMessageOut += errorMsg;
- errorMessageOut += "\n\nThe list of mandatory options for this program is:\n"
- "\t-TimeManager.TEnd End of the simulation [s] \n"
- "\t-TimeManager.DtInitial Initial timestep size [s] \n"
- "\t-Grid.File Name of the file containing the grid \n"
- "\t definition in DGF format\n"
- "\t-SpatialParams.LensLowerLeft coordinates of the lower left corner of the lens [m] \n"
- "\t-SpatialParams.LensUpperRight coordinates of the upper right corner of the lens [m] \n"
- "\t-Problem.Name String for naming of the output files \n"
- "\n";
-
- std::cout << errorMessageOut << std::endl;
- }
-}
-
-////////////////////////
-// the main function
-////////////////////////
-int main(int argc, char** argv)
-{
-
-#if HAVE_DUNE_ALUGRID
- typedef TTAG(LensCCAdaptiveProblem) TypeTag;
- return Dumux::start<TypeTag>(argc, argv, usage);
-#else
-#warning You need dune-ALUGrid to run this test.
- std::cerr << "You need dune-ALUGrid to run this test." << std::endl;
- return 77;
-#endif
-
-}
diff --git a/test/porousmediumflow/2p/implicit/test_ccadaptive2p.input b/test/porousmediumflow/2p/implicit/test_ccadaptive2p.input
deleted file mode 100644
index 4a3dff50e752ee0faef529cf7dc89079357c2136..0000000000000000000000000000000000000000
--- a/test/porousmediumflow/2p/implicit/test_ccadaptive2p.input
+++ /dev/null
@@ -1,26 +0,0 @@
-[TimeManager]
-DtInitial = 250 # [s]
-TEnd = 3000 # [s]
-
-[Grid]
-File = ./grids/rectangle-domain.msh
-
-[SpatialParams]
-LensLowerLeft = 1.0 2.0 # [m] coordinates of the lower left lens corner
-LensUpperRight = 4.0 3.0 # [m] coordinates of the upper right lens corner
-
-[Problem]
-Name = lensccadaptive # name passed to the output routines
-
-[Implicit]
-EnablePartialReassemble = 1 # enable partial reassembly of the jacobian matrix?
-EnableJacobianRecycling = 1 # Enable reuse of jacobian matrices?
-
-[GridAdapt]
-EnableInitializationIndicator = 1
-RefineAtDirichletBC = 1
-RefineAtFluxBC = 1
-MinLevel = 0
-MaxLevel = 2
-CoarsenTolerance = 1.0e-4
-RefineTolerance = 1.0e-4
diff --git a/test/references/lensboxadaptive-reference.vtu b/test/references/lensboxadaptive-reference.vtu
index 192343b08581d4bddbc6110c159c7be6b66a171d..162c0578c37ee50a0200a67591e99d2e7d3c536b 100644
--- a/test/references/lensboxadaptive-reference.vtu
+++ b/test/references/lensboxadaptive-reference.vtu
@@ -3033,309 +3033,6 @@
0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4 0.4
0.4 0.4 0.4 0.4 0.4 0.4 0.4
</DataArray>
- <DataArray type="Float32" Name="temperature" NumberOfComponents="1" format="ascii">
- 293.15 293.15 293.15 293.15 293.15 293.15 293.15 293.15 293.15 293.15 293.15 293.15
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diff --git a/test/references/lensccadaptive-reference.vtu b/test/references/lensccadaptive-reference.vtu
index 034df4ddcc67e0317f5bc9cb22ffe6866ea07cff..05264d541e2e2f4e9d5f00b00a6f3dd36cc50a39 100644
--- a/test/references/lensccadaptive-reference.vtu
+++ b/test/references/lensccadaptive-reference.vtu
@@ -4053,411 +4053,6 @@
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diff --git a/test/references/lensccadaptivepointsource-reference.vtu b/test/references/lensccadaptivepointsource-reference.vtu
index a0e673a553bb82114320b04a2237d1c5571ac23e..048aa6d7b43134c07091ad95dcca633fe69ecab2 100644
--- a/test/references/lensccadaptivepointsource-reference.vtu
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