diff --git a/doc/handbook/2_detailedinstall.tex b/doc/handbook/2_detailedinstall.tex
index 438a85b68726d942b709ac812c2b604a6a10408a..b110f791cfb44f402f522e6753bb84cff1f3db94 100644
--- a/doc/handbook/2_detailedinstall.tex
+++ b/doc/handbook/2_detailedinstall.tex
@@ -78,7 +78,7 @@ The slightly old-fashionedly named tape-archive-file, shortly named tar file or
tarball, is a common file format for distributing collections of files contained
within these archives.
The extraction from the tar files is done as follows:
-Download the tarballs from the respective \Dune (version 2.3) and \Dumux websites
+Download the tarballs from the respective \Dune (version 2.4) and \Dumux websites
to a certain folder in your file system.
Create the {\Dune} root directory, named \texttt{dune} in the example below.
Then extract the content of the tar files, e.\,g. with the command-line program
@@ -91,14 +91,14 @@ After extraction, the actual name of the \emph{dumux root directory} is \texttt{
\begin{lstlisting}[style=Bash]
$ mkdir dune
$ cd dune
-$ tar xzvf path_to_tarball_of/dune-common-2.3.1.tar.gz
-$ tar xzvf path_to_tarball_of/dune-geometry-2.3.1.tar.gz
-$ tar xzvf path_to_tarball_of/dune-grid-2.3.1.tar.gz
-$ tar xzvf path_to_tarball_of/dune-istl-2.3.1.tar.gz
-$ tar xzvf path_to_tarball_of/dune-localfunctions-2.3.1.tar.gz
+$ tar xzvf path_to_tarball_of/dune-common-2.4.0.tar.gz
+$ tar xzvf path_to_tarball_of/dune-geometry-2.4.0.tar.gz
+$ tar xzvf path_to_tarball_of/dune-grid-2.4.0.tar.gz
+$ tar xzvf path_to_tarball_of/dune-istl-2.4.0.tar.gz
+$ tar xzvf path_to_tarball_of/dune-localfunctions-2.4.0.tar.gz
$ tar xzvf path_to_tarball_of/dune-pdelab-2.0.0.tar.gz
-$ tar xzvf path_to_tarball_of/dune-typetree-2.3.1.tar.gz
-$ tar xzvf path_to_tarball_of/dumux-2.7.tar.gz
+$ tar xzvf path_to_tarball_of/dune-typetree-2.4.0.tar.gz
+$ tar xzvf path_to_tarball_of/dumux-2.9.tar.gz
\end{lstlisting}
Furthermore, if you wish to install the optional \Dune Grid-Howto which provides a tutorial
diff --git a/doc/handbook/4_structure.tex b/doc/handbook/4_structure.tex
index f97cac6275ea9264204de0cbaa8da768f25bc55d..d685f33b095b25db4dc1a47cfa17b98b9df9ee8b 100644
--- a/doc/handbook/4_structure.tex
+++ b/doc/handbook/4_structure.tex
@@ -14,22 +14,18 @@
\item \texttt{common}: general methods shared by all models,
like the \texttt{start.hh} or the time manager
- \item \texttt{decoupled}: contains sequential models (pressure equation as part of
- the fractional flow formulation). The general decoupled formulation can be found in
- the subdirectory \texttt{common}. In each model folder, there are subdirectories
- for the implicit pressure equation sorted by the employed discretization method,
- and for the explicit transport equation.
-
\item \texttt{freeflow}: single-phase free-flow models. All models are discretized
fully implicitly using the box-method.
\item \texttt{geomechanics}: models for solving rock mechanics and flow.
- \item \texttt{implicit}: contains all fully implicit models. General methods shared
- by all models are contained in \texttt{common}, together with specilized methods
- for the two discretization types \texttt{box} and \texttt{cellcentered}. The
- \texttt{adaptive} folder contains methods for grid adaption. Each of the other
- subdirectories contain a derived specific numerical model.
+ \item \texttt{implicit}: contains the general methods shared
+ by all implicit models, together with specilized methods
+ for the two discretization types \texttt{box} and \texttt{cellcentered}.
+ The \texttt{adaptive} folder contains methods for grid adaption.
+ The specialized model files can be found
+ at \texttt{porousmediumflow/model of interest/implicit/},
+ \texttt{freeflow/model of interest/}, or \texttt{geomechanics/model of interest/}.
\item \texttt{io}: additional in-/output possibilities like restart files,
gnuplot-interface and a VTKWriter.
@@ -43,14 +39,20 @@
(e.g. viscosity, density).
The folder \texttt{spatialparams} contains all spatially dependend variables, like permeability and porosity.
The class in \texttt{implicitspatialparameters.hh} provides spatial averaging routines.
- Constitutive relations are found in \texttt{fluidmatrixinteractions},.
+ Constitutive relations are found in \texttt{fluidmatrixinteractions}.
\item \texttt{multidomain}: coupling handling and coupling conditions for connecting
different model types in different subdomains.
\item \texttt{nonlinear}: Newton's method.
- \item \texttt{parallel}: helper files for parallel simulations
+ \item \texttt{parallel}: helper files for parallel simulations.
+
+ \item \texttt{porousmediumflow}: contains all models for porous media setups.
+
+ \item \texttt{sequential}: contains the general methods shared
+ by all sequential models. The specialized model files can be found
+ at \texttt{porousmediumflow/model of interest/sequential/}.
\end{itemize}
\item \texttt{test}: tests for each numerical model and some functionality.
@@ -101,18 +103,13 @@
[.\node[FirstLevel] {common};
\node[ThirdLevel] {
Common files of the implicit (box and cell centered) models and the
- decoupled models: time integration, start routine, the property
+ sequential models: time integration, start routine, the property
system, ...};
]
- [.\node[FirstLevel] {decoupled};
+ [.\node[FirstLevel] {freeflow};
[.\node[SecondLevel] {\emph{models}};
- \node[ThirdLevel] {
- Specific model definition for the decoupled formulation. In each model
- folder are subdirectories for the implicit pressure equation, sorted by
- discretization method, and for the explicit transport.};
- ]
- [.\node[SecondLevel] {common};
- \node[ThirdLevel] {Base classes and general files for the decoupled formulation.};
+ \node[ThirdLevel] {Specific model definition for free flow problems using the (Navier-) Stokes
+ and algebraic turbulence models.};
]
]
[.\node[FirstLevel] {geomechanics};
@@ -120,32 +117,22 @@
\node[ThirdLevel] {Specific model definition for coupled flow and geomechnics simulations.};
]
]
- [.\node[FirstLevel] {freeflow};
- [.\node[SecondLevel] {\emph{models}};
- \node[ThirdLevel] {Specific model definition for free flow problems using the (Navier-) Stokes
- and algebraic turbulence models.};
- ]
- ]
[.\node[FirstLevel] {implicit};
- [.\node[SecondLevel] {\emph{models}};
- \node[ThirdLevel] {Model and problem definition: implementation of equations,
- model specific properties and indices.};
- ]
+% [.\node[SecondLevel] {\emph{models}};
+ \node[ThirdLevel] {Common functionality of cell centered and box formulation:
+ assembling in implicitlocaljacobian.hh, evaluation of partial derivative
+ in implicitlocalresidual.hh, base classes for model and problem definition.};
+% ]
[.\node[SecondLevel] {box};
- \node[ThirdLevel] {Specific files for gerenal fully implicit boxmethod:
- boxassembler, dual mesh geometry in boxfvelementgeometry.hh,
+ \node[ThirdLevel] {Specific files for the gerenal fully implicit boxmethod:
+ assembler, dual mesh geometry in fvelementgeometry.hh,
base classes for model and problem definition.};
]
[.\node[SecondLevel] {cellcentered};
- \node[ThirdLevel] {Specific files for fully implicit cell centered method: ccassembler,
- mesh geometry in ccfvelementgeometry.hh, base classes for model and
+ \node[ThirdLevel] {Specific files for fully implicit cell centered method: assembler,
+ mesh geometry in fvelementgeometry.hh, base classes for model and
problem definition.};
]
- [.\node[SecondLevel] {common};
- \node[ThirdLevel] {Common functionality of cell centered and box formulation:
- assembling in implicitlocaljacobian.hh, evaluation of partial derivative
- in implicitlocalresidual.hh, base classes for model and problem definition.};
- ]
]
[.\node[FirstLevel] {io};
\node[ThirdLevel] {Additional in-/output possibilities like restart files, gnuplot-interface
@@ -206,6 +193,20 @@
]
[.\node[FirstLevel] {parallel};
\node[ThirdLevel] {Files for parallel programming.};
+ ]
+ [.\node[FirstLevel] {porousmediumflow};
+ [.\node[SecondLevel] {\emph{models}};
+ \node[ThirdLevel] {Specific model definition for porous medium flow simulations,
+ in both \emph{implicit} or \emph{sequential} formulation:
+ implementation of equations,
+ model specific properties and indices.};
+ ]
+ ]
+ [.\node[FirstLevel] {sequential};
+% [.\node[SecondLevel] {\emph{models}};
+ \node[ThirdLevel] {
+ General model definitions for the sequential formulation.};
+% ]
]
]
\end{tikzpicture}
diff --git a/doc/handbook/SVG/dumux_strucutre_flowchart_horizontal_explained.svg b/doc/handbook/SVG/dumux_strucutre_flowchart_horizontal_explained.svg
deleted file mode 100644
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