From fa076953431ec5191d60e785548f15f6fdfdc009 Mon Sep 17 00:00:00 2001
From: Katherina Baber <katherina.baber@gmail.com>
Date: Thu, 9 Feb 2012 11:13:18 +0000
Subject: [PATCH] more interesting and more reasonable test-problems for the 1p
and 1p2c model
-1ptest_problem is now a lens problem, the lens can be defined in the parameter
file, documentation is corrected
-1p2ctest is not a bio-problem anymore, but uses a new 1phase
fluidsystem for component transport of N2 in water. The problem includes
an outflow condition, the documentation is corrected (for example:
compressible fluids are also possible)
-1p2cmodel: use phaseIdx (set in 1p2cindices) instead of hard coded
index 0 for the phase, so that it is in general possible to use i.e. a
gas phase (see stokes2c as example)
git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@7686 2fb0f335-1f38-0410-981e-8018bf24f1b0
---
dumux/boxmodels/1p/1pfluxvariables.hh | 17 +-
dumux/boxmodels/1p/1plocalresidual.hh | 6 +-
dumux/boxmodels/1p/1pmodel.hh | 11 +-
dumux/boxmodels/1p/1pproblem.hh | 35 +-
dumux/boxmodels/1p/1pproperties.hh | 2 +-
dumux/boxmodels/1p/1pvolumevariables.hh | 17 +-
dumux/boxmodels/1p2c/1p2cfluxvariables.hh | 48 +-
dumux/boxmodels/1p2c/1p2cindices.hh | 1 -
dumux/boxmodels/1p2c/1p2clocalresidual.hh | 39 +-
dumux/boxmodels/1p2c/1p2cmodel.hh | 23 +-
dumux/boxmodels/1p2c/1p2cproblem.hh | 41 +-
dumux/boxmodels/1p2c/1p2cvolumevariables.hh | 54 +-
.../h2on2liquidphasefluidsystem.hh | 634 +++
test/boxmodels/1p/1ptest-reference.vtu | 33 +-
test/boxmodels/1p/1ptestproblem.hh | 14 +-
test/boxmodels/1p/1ptestspatialparameters.hh | 51 +-
test/boxmodels/1p/test_1p.input | 40 +-
test/boxmodels/1p2c/grids/test_1p2c.dgf | 4 +-
test/boxmodels/1p2c/test_1p2c.cc | 2 +-
test/boxmodels/1p2c/test_1p2c.input | 32 +-
test/boxmodels/1p2c/tissue-reference.vtu | 3443 +----------------
test/boxmodels/1p2c/tissue_tumor_problem.hh | 145 +-
.../1p2c/tissue_tumor_spatialparameters.hh | 65 +-
23 files changed, 1109 insertions(+), 3648 deletions(-)
create mode 100644 dumux/material/fluidsystems/h2on2liquidphasefluidsystem.hh
diff --git a/dumux/boxmodels/1p/1pfluxvariables.hh b/dumux/boxmodels/1p/1pfluxvariables.hh
index 8c52db76ee..07b487deac 100644
--- a/dumux/boxmodels/1p/1pfluxvariables.hh
+++ b/dumux/boxmodels/1p/1pfluxvariables.hh
@@ -66,7 +66,7 @@ class OnePFluxVariables
public:
/*
- * \brief The constructor
+ * \brief The constructor.
*
* \param problem The problem
* \param element The finite element
@@ -87,27 +87,28 @@ public:
calculateGradients_(problem, element, elemDat);
};
-
+ /*!
+ * \brief The face of the current sub-control volume.
+ */
const SCVFace &face() const
{ return fvElemGeom_.subContVolFace[scvfIdx_]; }
/*!
- * \brief Return the intrinsic permeability.
+ * \brief Return the intrinsic permeability \f$\mathrm{[m^2]}\f$.
*/
const Tensor &intrinsicPermeability() const
{ return K_; }
/*!
- * \brief Return the pressure potential gradient.
+ * \brief Return the pressure potential gradient \f$\mathrm{[Pa/m]}\f$.
*/
const Vector &potentialGrad() const
{ return potentialGrad_; }
/*!
- * \brief Given the intrinisc permeability times the pressure
- * potential gradient and SCV face normal for a phase,
- * return the local index of the upstream control volume
- * for a given phase.
+ * \brief Return the local index of the upstream control volume
+ * for a given phase, given the intrinisc permeability times the pressure
+ * potential gradient and SCV face normal for a phase.
*
* \param normalFlux The normal flux i.e. the given intrinsic permeability
* times the pressure potential gradient and SCV face normal.
diff --git a/dumux/boxmodels/1p/1plocalresidual.hh b/dumux/boxmodels/1p/1plocalresidual.hh
index 76646e596d..2e763a07bd 100644
--- a/dumux/boxmodels/1p/1plocalresidual.hh
+++ b/dumux/boxmodels/1p/1plocalresidual.hh
@@ -76,7 +76,7 @@ public:
/*!
* \brief Evaluate the rate of change of all conservation
- * quantites (e.g. phase mass) within a sub control
+ * quantites (e.g. phase mass) within a sub-control
* volume of a finite volume element for the OneP
* model.
*
@@ -101,7 +101,7 @@ public:
/*!
- * \brief Evaluates the mass flux over a face of a subcontrol
+ * \brief Evaluate the mass flux over a face of a sub-control
* volume.
*
* \param flux The flux over the SCV (sub-control-volume) face
@@ -131,7 +131,7 @@ public:
}
/*!
- * \brief Calculate the source term of the equation
+ * \brief Calculate the source term of the equation.
*
* \param q The source/sink in the SCV
* \param localVertexIdx The index of the SCV
diff --git a/dumux/boxmodels/1p/1pmodel.hh b/dumux/boxmodels/1p/1pmodel.hh
index 2129d9df7d..3f6ddc90c4 100644
--- a/dumux/boxmodels/1p/1pmodel.hh
+++ b/dumux/boxmodels/1p/1pmodel.hh
@@ -24,7 +24,7 @@
* \file
*
* \brief Base class for all models which use the one-phase,
- * box model
+ * box model.
* Adaption of the BOX scheme to the one-phase flow model.
*/
@@ -50,13 +50,14 @@ namespace Dumux
* centered finite volume (box) scheme as spatial and
* the implicit Euler method as time discretization.
* Of course, the model can also be used for incompressible
- * single phase flow modeling, if in the problem file a fluid with constant density is chosen.
+ * single phase flow modeling, if a fluid with constant density is chosen in the problem file.
*/
template<class TypeTag >
class OnePBoxModel : public BoxModel<TypeTag>
{
typedef typename GET_PROP_TYPE(TypeTag, FVElementGeometry) FVElementGeometry;
typedef typename GET_PROP_TYPE(TypeTag, VolumeVariables) VolumeVariables;
+ typedef typename GET_PROP_TYPE(TypeTag, SpatialParameters) SpatialParameters;
typedef typename GET_PROP_TYPE(TypeTag, ElementBoundaryTypes) ElementBoundaryTypes;
typedef typename GET_PROP_TYPE(TypeTag, SolutionVector) SolutionVector;
@@ -82,6 +83,7 @@ public:
// create the required scalar fields
unsigned numVertices = this->problem_().gridView().size(dim);
ScalarField *p = writer.allocateManagedBuffer(numVertices);
+ ScalarField *K = writer.allocateManagedBuffer(numVertices);
unsigned numElements = this->gridView_().size(0);
ScalarField *rank = writer.allocateManagedBuffer(numElements);
@@ -110,12 +112,17 @@ public:
fvElemGeom,
i,
false);
+ const SpatialParameters &spatialParams = this->problem_().spatialParameters();
(*p)[globalIdx] = volVars.pressure();
+ (*K)[globalIdx] = spatialParams.intrinsicPermeability(*elemIt,
+ fvElemGeom,
+ i);
};
}
writer.attachVertexData(*p, "p");
+ writer.attachVertexData(*K, "K");
writer.attachCellData(*rank, "process rank");
}
};
diff --git a/dumux/boxmodels/1p/1pproblem.hh b/dumux/boxmodels/1p/1pproblem.hh
index 85e40f8fb6..6fb59b6232 100644
--- a/dumux/boxmodels/1p/1pproblem.hh
+++ b/dumux/boxmodels/1p/1pproblem.hh
@@ -23,7 +23,7 @@
* \file
*
* \brief Base class for all problems which use the one-phase box
- * model
+ * model.
*/
#ifndef DUMUX_1P_PROBLEM_HH
#define DUMUX_1P_PROBLEM_HH
@@ -36,7 +36,7 @@ namespace Dumux
/*!
* \ingroup OnePBoxModel
* \ingroup BoxBaseProblems
- * \brief Base class for all problems which use the single-phase box model
+ * \brief Base class for all problems which use the single-phase box model.
*
*/
template<class TypeTag>
@@ -58,7 +58,7 @@ class OnePBoxProblem : public BoxProblem<TypeTag>
public:
/*!
- * \brief The constructor
+ * \brief The constructor.
*
* \param timeManager The time manager
* \param gridView The grid view
@@ -79,14 +79,14 @@ public:
// \{
/*!
- * \brief Returns the temperature \f$\mathrm{[K]}\f$ within a control volume.
+ * \brief Return the temperature \f$\mathrm{[K]}\f$ within a control volume.
*
* This is the discretization specific interface for the box
* method. By default it just calls temperature(pos).
*
* \param element The DUNE Codim<0> enitiy which intersects with
- * the finite volume.
- * \param fvGeom The finite volume geometry of the element.
+ * the finite volume
+ * \param fvGeom The finite volume geometry of the element
* \param scvIdx The local index of the sub control volume inside the element
*/
Scalar boxTemperature(const Element &element,
@@ -95,18 +95,18 @@ public:
{ return asImp_().temperatureAtPos(fvGeom.subContVol[scvIdx].global); }
/*!
- * \brief Returns the temperature \f$\mathrm{[K]}\f$ at a given global position.
+ * \brief Return the temperature \f$\mathrm{[K]}\f$ at a given global position.
*
* This is not specific to the discretization. By default it just
* calls temperature().
*
- * \param pos The position in global coordinates where the temperature should be specified.
+ * \param pos The position in global coordinates where the temperature should be specified
*/
Scalar temperatureAtPos(const GlobalPosition &pos) const
{ return asImp_().temperature(); }
/*!
- * \brief Returns the temperature \f$\mathrm{[K]}\f$ for an isothermal problem.
+ * \brief Return the temperature \f$\mathrm{[K]}\f$ for an isothermal problem.
*
* This is not specific to the discretization. By default it just
* throws an exception so it must be overloaded by the problem if
@@ -116,10 +116,15 @@ public:
{ DUNE_THROW(Dune::NotImplemented, "temperature() method not implemented by the actual problem"); };
/*!
- * \brief Returns the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
+ * \brief Return the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
*
* This is the box discretization specific interface. By default
* it just calls gravityAtPos().
+ *
+ * \param element The DUNE Codim<0> enitiy which intersects with
+ * the finite volume
+ * \param fvGeom The finite volume geometry of the element
+ * \param scvIdx The local index of the sub control volume inside the element
*/
const GlobalPosition &boxGravity(const Element &element,
const FVElementGeometry &fvGeom,
@@ -127,16 +132,18 @@ public:
{ return asImp_().gravityAtPos(fvGeom.subContVol[scvIdx].global); }
/*!
- * \brief Returns the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
+ * \brief Return the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
*
* This is discretization independent interface. By default it
* just calls gravity().
+ *
+ * \param pos The position in global coordinates
*/
const GlobalPosition &gravityAtPos(const GlobalPosition &pos) const
{ return asImp_().gravity(); }
/*!
- * \brief Returns the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
+ * \brief Return the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
*
* This method is used for problems where the gravitational
* acceleration does not depend on the spatial position. The
@@ -148,7 +155,7 @@ public:
{ return gravity_; }
/*!
- * \brief Returns the spatial parameters object.
+ * \brief Return the spatial parameters object.
*/
SpatialParameters &spatialParameters()
{ return *spatialParameters_; }
@@ -160,7 +167,7 @@ public:
{ return *spatialParameters_; }
private:
- //! Returns the implementation of the problem (i.e. static polymorphism)
+ //! Return the implementation of the problem (i.e. static polymorphism)
Implementation &asImp_()
{ return *static_cast<Implementation *>(this); }
diff --git a/dumux/boxmodels/1p/1pproperties.hh b/dumux/boxmodels/1p/1pproperties.hh
index f3674f2147..ab950635ba 100644
--- a/dumux/boxmodels/1p/1pproperties.hh
+++ b/dumux/boxmodels/1p/1pproperties.hh
@@ -26,7 +26,7 @@
* \ingroup OnePBoxModel
* \file
*
- * \brief Defines the properties required for the onephase BOX model.
+ * \brief Defines the properties required for the one-phase BOX model.
*/
#ifndef DUMUX_1P_PROPERTIES_DATA_HH
#define DUMUX_1P_PROPERTIES_DATA_HH
diff --git a/dumux/boxmodels/1p/1pvolumevariables.hh b/dumux/boxmodels/1p/1pvolumevariables.hh
index 1774714240..e074cb2ac4 100644
--- a/dumux/boxmodels/1p/1pvolumevariables.hh
+++ b/dumux/boxmodels/1p/1pvolumevariables.hh
@@ -39,7 +39,7 @@ namespace Dumux
/*!
* \ingroup OnePBoxModel
* \ingroup BoxVolumeVariables
- * \brief Contains the quantities which are are constant within a
+ * \brief Contains the quantities which are constant within a
* finite volume in the one-phase model.
*/
template <class TypeTag>
@@ -123,7 +123,7 @@ public:
}
/*!
- * \brief Returns temperature inside the sub-control volume.
+ * \brief Return temperature \f$\mathrm{[K]}\f$ inside the sub-control volume.
*
* Note that we assume thermodynamic equilibrium, i.e. the
* temperature of the rock matrix and of all fluid phases are
@@ -133,34 +133,35 @@ public:
{ return fluidState_.temperature(); }
/*!
- * \brief Returns the effective pressure of a given phase within
+ * \brief Returns the effective pressure \f$\mathrm{[Pa]}\f$ of a given phase within
* the control volume.
+ *
*/
Scalar pressure() const
{ return fluidState_.pressure(/*phaseIdx=*/0); }
/*!
- * \brief Returns the mass density of a given phase within the
+ * \brief Return the mass density \f$\mathrm{[kg/m13]}\f$ of a given phase within the
* control volume.
*/
Scalar density() const
{ return fluidState_.density(/*phaseIdx=*/0); }
/*!
- * \brief Returns the dynamic viscosity of the fluid within the
+ * \brief Return the dynamic viscosity \f$\mathrm{[Pa s]}\f$ of the fluid within the
* control volume.
*/
Scalar viscosity() const
{ return fluidState_.viscosity(/*phaseIdx=*/0); }
/*!
- * \brief Returns the average porosity within the control volume.
+ * \brief Return the average porosity \f$\mathrm{[-]}\f within the control volume.
*/
Scalar porosity() const
{ return porosity_; }
/*!
- * \brief Returns the fluid state of the control volume.
+ * \brief Return the fluid state of the control volume.
*/
const FluidState &fluidState() const
{ return fluidState_; }
@@ -176,7 +177,7 @@ protected:
}
/*!
- * \brief Called by update() to compute the energy related quantities
+ * \brief Called by update() to compute the energy related quantities.
*/
void updateEnergy_(const PrimaryVariables &sol,
const Problem &problem,
diff --git a/dumux/boxmodels/1p2c/1p2cfluxvariables.hh b/dumux/boxmodels/1p2c/1p2cfluxvariables.hh
index ca29ba8040..95d7471f46 100644
--- a/dumux/boxmodels/1p2c/1p2cfluxvariables.hh
+++ b/dumux/boxmodels/1p2c/1p2cfluxvariables.hh
@@ -27,7 +27,7 @@
* \brief This file contains the data which is required to calculate
* all fluxes of fluid phases over a face of a finite volume.
*
- * This means pressure and temperature gradients, phase densities at
+ * This means pressure and mole-/mass-fraction gradients, phase densities at
* the integration point, etc.
*
*/
@@ -49,7 +49,7 @@ namespace Dumux
* calculate the fluxes of the fluid phases over a face of a
* finite volume for the one-phase, two-component model.
*
- * This means pressure and concentration gradients, phase densities at
+ * This means pressure and mole-/mass-fraction gradients, phase densities at
* the intergration point, etc.
*/
template <class TypeTag>
@@ -90,6 +90,8 @@ public:
* \param elemGeom The finite-volume geometry in the box scheme
* \param scvfIdx The local index of the SCV (sub-control-volume) face
* \param elemDat The volume variables of the current element
+ * \param onBoundary A boolean variable to specify whether the flux variables
+ * are calculated for interior SCV faces or boundary faces, default=false
*/
OnePTwoCFluxVariables(const Problem &problem,
const Element &element,
@@ -121,7 +123,7 @@ public:
* vertex j.
*
* Note that the length of the face's normal is the area of the
- * phase, so this is not the actual velocity by the integral of
+ * phase, so this is not the actual velocity but the integral of
* the velocity over the face's area. Also note that the phase
* mobility is not yet included here since this would require a
* decision on the upwinding approach (which is done in the
@@ -150,25 +152,25 @@ public:
}
/*!
- * \brief Return the intrinsic permeability tensor.
+ * \brief Return the intrinsic permeability tensor \f$\mathrm{[m^2]}\f$.
*/
const Tensor &intrinsicPermeability() const
{ return K_; }
/*!
- * \brief Return the dispersion tensor.
+ * \brief Return the dispersion tensor \f$\mathrm{[m^2/s]}\f$.
*/
const Tensor &dispersionTensor() const
{ return dispersionTensor_; }
/*!
- * \brief Return the pressure potential gradient.
+ * \brief Return the pressure potential gradient \f$\mathrm{[Pa/m]}\f$.
*/
const Vector &potentialGrad() const
{ return potentialGrad_; }
/*!
- * \brief Return the concentration gradient.
+ * \brief Return the concentration gradient \f$\mathrm{[mol/m^3/m]}\f$.
*
* \param compIdx The index of the considered component
*/
@@ -183,7 +185,7 @@ public:
};
/*!
- * \brief The molar concentration gradient of a component in a phase.
+ * \brief Return the mole-fraction gradient of a component in a phase \f$\mathrm{[mol/mol/m)]}\f$.
*
* \param compIdx The index of the considered component
*/
@@ -198,7 +200,7 @@ public:
};
/*!
- * \brief The mass fraction gradient of a component in a phase.
+ * \brief Return the mass-fraction gradient of a component in a phase \f$\mathrm{[kg/kg/m)]}\f$.
*
* \param compIdx The index of the considered component
*/
@@ -213,7 +215,7 @@ public:
};
/*!
- * \brief The binary diffusion coefficient for each fluid phase in the porous medium.
+ * \brief The binary diffusion coefficient for each fluid phase in the porous medium \f$\mathrm{[m^2/s]}\f$.
*/
Scalar porousDiffCoeff() const
{
@@ -243,23 +245,23 @@ public:
{ return densityAtIP_; }
/*!
- * \brief Given the intrinisc permeability times the pressure
+ * \brief Given the intrinsic permeability times the pressure
* potential gradient and SCV face normal for a phase,
* return the local index of the upstream control volume
* for a given phase.
*
- * \param normalFlux The flux over a face of the sub control volume
+ * \param normalFlux The flux over a face of the sub-control volume
*/
int upstreamIdx(Scalar normalFlux) const
{ return (normalFlux >= 0)?face().i:face().j; }
/*!
- * \brief Given the intrinisc permeability times the pressure
+ * \brief Given the intrinsic permeability times the pressure
* potential gradient and SCV face normal for a phase,
* return the local index of the downstream control volume
* for a given phase.
*
- * \param normalFlux The flux over a face of the sub control volume
+ * \param normalFlux The flux over a face of the sub-control volume
*/
int downstreamIdx(Scalar normalFlux) const
{ return (normalFlux > 0)?face().j:face().i; }
@@ -281,7 +283,7 @@ public:
protected:
/*!
- * \brief Calculation of the pressure and concentration gradients
+ * \brief Calculation of the pressure and mole-/mass-fraction gradients.
*
* \param problem The considered problem file
* \param element The considered element of the grid
@@ -317,17 +319,20 @@ protected:
tmp *= elemVolVars[idx].molarity(comp1Idx);
concentrationGrad_ += tmp;
+ // the mole-fraction gradient
tmp = feGrad;
tmp *= elemVolVars[idx].moleFraction(comp1Idx);
moleFracGrad_ += tmp;
+ // the mass-fraction gradient
tmp = feGrad;
tmp *= elemVolVars[idx].massFraction(comp1Idx);
massFracGrad_ += tmp;
+
// phase viscosity
viscosityAtIP_ += elemVolVars[idx].viscosity()*face().shapeValue[idx];
- //phase moledensity
+ //phase molar density
molarDensityAtIP_ += elemVolVars[idx].molarDensity()*face().shapeValue[idx];
//phase density
@@ -403,8 +408,8 @@ protected:
/*!
* \brief Calculation of the velocity normal to face using Darcy's law.
- * Tensorial permeability is multiplied with the potential Gradient and the face normal.
- * Identify upstream node of face
+ * Tensorial permeability is multiplied with the potential gradient and the face normal.
+ * Identify upstream node of face.
*
* \param problem The considered problem file
* \param element The considered element of the grid
@@ -428,7 +433,7 @@ protected:
}
}
/*!
- * \brief Calculation of the effective diffusion coefficient
+ * \brief Calculation of the effective diffusion coefficient.
*
* \param problem The considered problem file
* \param element The considered element of the grid
@@ -450,7 +455,7 @@ protected:
}
/*!
- * \brief Calculation of the dispersion
+ * \brief Calculation of the dispersion.
*
* \param problem The considered problem file
* \param element The considered element of the grid
@@ -504,8 +509,9 @@ protected:
Vector potentialGrad_;
//! concentratrion gradient
Vector concentrationGrad_;
- //! molar concentratrion gradient
+ //! mole-fraction gradient
Vector moleFracGrad_;
+ //! mass-fraction gradient
Vector massFracGrad_;
//! the effective diffusion coefficent in the porous medium
Scalar diffCoeffPM_;
diff --git a/dumux/boxmodels/1p2c/1p2cindices.hh b/dumux/boxmodels/1p2c/1p2cindices.hh
index 76128c6562..2055fb3700 100644
--- a/dumux/boxmodels/1p2c/1p2cindices.hh
+++ b/dumux/boxmodels/1p2c/1p2cindices.hh
@@ -59,7 +59,6 @@ struct OnePTwoCIndices
// primary variable indices
static const int pressureIdx = PVOffset + 0; //!< pressure
static const int x1Idx = PVOffset + 1; //!< mole fraction of the second component
- //in my case the therapeutic agent
};
// \}
diff --git a/dumux/boxmodels/1p2c/1p2clocalresidual.hh b/dumux/boxmodels/1p2c/1p2clocalresidual.hh
index fbde898b45..f76f173fa0 100644
--- a/dumux/boxmodels/1p2c/1p2clocalresidual.hh
+++ b/dumux/boxmodels/1p2c/1p2clocalresidual.hh
@@ -52,7 +52,7 @@ namespace Dumux
* \brief Calculate the local Jacobian for the single-phase,
* two-component model in the BOX scheme.
*
- * This class is used to fill the gaps in BoxLocalResidual for the 1P-2C flow.
+ * This class is used to fill the gaps in BoxLocalResidual for the 1p2c flow.
*/
template<class TypeTag>
class OnePTwoCLocalResidual : public BoxLocalResidual<TypeTag>
@@ -76,8 +76,11 @@ protected:
{
numEq = GET_PROP_VALUE(TypeTag, NumEq),
- // indices of the primary variables
+ //phase index
+ phaseIdx = Indices::phaseIdx,
+ // indices of the primary variables
+ pressuerIdx = Indices::pressureIdx,
comp1Idx = Indices::comp1Idx,
// indices of the equations
@@ -85,6 +88,7 @@ protected:
transEqIdx = Indices::transEqIdx
};
+ //property that defines whether mole or mass fractions are used
static const bool useMoles = GET_PROP_VALUE(TypeTag, UseMoles);
@@ -106,7 +110,7 @@ public:
* (e.g. phase mass) within a finite volume.
*
* \param result The mass of the component within the sub-control volume
- * \param scvIdx The index of the considered face of the sub control volume
+ * \param scvIdx The index of the considered face of the sub-control volume
* \param usePrevSol Evaluate function with solution of current or previous time step
*/
void computeStorage(PrimaryVariables &result, int scvIdx, bool usePrevSol) const
@@ -124,10 +128,10 @@ public:
{
// storage term of continuity equation - massfractions
result[contiEqIdx] +=
- volVars.fluidState().density(/*phaseIdx*/0)*volVars.porosity();
+ volVars.fluidState().density(phaseIdx)*volVars.porosity();
//storage term of the transport equation - massfractions
result[transEqIdx] +=
- volVars.fluidState().density(/*phaseIdx*/0) * volVars.fluidState().massFraction(/*phaseIdx*/0, comp1Idx) * volVars.porosity();
+ volVars.fluidState().density(phaseIdx) * volVars.fluidState().massFraction(phaseIdx, comp1Idx) * volVars.porosity();
}
else
{
@@ -136,19 +140,20 @@ public:
result[contiEqIdx] += volVars.molarDensity()*volVars.porosity();
// storage term of the transport equation - molefractions
result[transEqIdx] +=
- volVars.fluidState().molarDensity(/*phaseIdx*/0)*volVars.fluidState().moleFraction(/*phaseIdx*/0, comp1Idx) *
+ volVars.fluidState().molarDensity(phaseIdx)*volVars.fluidState().moleFraction(phaseIdx, comp1Idx) *
volVars.porosity();
}
}
/*!
- * \brief Evaluates the mass flux over a face of a subcontrol
+ * \brief Evaluate the mass flux over a face of a sub-control
* volume.
*
* \param flux The flux over the SCV (sub-control-volume) face for each component
* \param faceId The index of the considered face of the sub control volume
- * \param onBoundary If the considered face exists at the boundary
+ * \param onBoundary A boolean variable to specify whether the flux variables
+ * are calculated for interior SCV faces or boundary faces, default=false
*/
void computeFlux(PrimaryVariables &flux, int faceId, bool onBoundary=false) const
{
@@ -165,8 +170,8 @@ public:
}
/*!
- * \brief Evaluates the advective mass flux of all components over
- * a face of a subcontrol volume.
+ * \brief Evaluate the advective mass flux of all components over
+ * a face of a sub-control volume.
*
* \param flux The advective flux over the sub-control-volume face for each component
* \param fluxVars The flux variables at the current SCV
@@ -197,9 +202,9 @@ public:
// advective flux of the second component - massfraction
flux[transEqIdx] +=
fluxVars.KmvpNormal() *
- (( upwindWeight_)*up.fluidState().density(/*phaseIdx=*/0) * up.fluidState().massFraction(/*phaseIdx=*/0, comp1Idx)/up.viscosity()
+ (( upwindWeight_)*up.fluidState().density(phaseIdx) * up.fluidState().massFraction(phaseIdx, comp1Idx)/up.viscosity()
+
- (1 - upwindWeight_)*dn.fluidState().density(/*phaseIdx=*/0)*dn.fluidState().massFraction(/*phaseIdx=*/0, comp1Idx)/dn.viscosity());
+ (1 - upwindWeight_)*dn.fluidState().density(phaseIdx)*dn.fluidState().massFraction(phaseIdx, comp1Idx)/dn.viscosity());
}
else
{
@@ -214,16 +219,16 @@ public:
// advective flux of the second component -molefraction
flux[transEqIdx] +=
fluxVars.KmvpNormal() *
- (( upwindWeight_)*up.molarDensity() * up.fluidState().moleFraction(/*phaseIdx=*/0, comp1Idx)/up.viscosity()
+ (( upwindWeight_)*up.molarDensity() * up.fluidState().moleFraction(phaseIdx, comp1Idx)/up.viscosity()
+
- (1 - upwindWeight_)*dn.molarDensity() * dn.fluidState().moleFraction(/*phaseIdx=*/0, comp1Idx)/dn.viscosity());
+ (1 - upwindWeight_)*dn.molarDensity() * dn.fluidState().moleFraction(phaseIdx, comp1Idx)/dn.viscosity());
}
}
/*!
* \brief Adds the diffusive mass flux of all components over
- * a face of a subcontrol volume.
+ * a face of a sub-control volume.
*
* \param flux The diffusive flux over the sub-control-volume face for each component
* \param fluxVars The flux variables at the current SCV
@@ -275,6 +280,10 @@ public:
/*!
* \brief Add Outflow boundary conditions for a single sub-control
* volume face to the local residual.
+ *
+ * \param isIt The intersection iterator of current element
+ * \param scvIdx The index of the considered face of the sub-control volume
+ * \param boundaryFaceIdx The index of the considered boundary face of the sub control volume
*/
void evalOutflowSegment(const IntersectionIterator &isIt,
int scvIdx,
diff --git a/dumux/boxmodels/1p2c/1p2cmodel.hh b/dumux/boxmodels/1p2c/1p2cmodel.hh
index d875818ace..bc56bf2c68 100644
--- a/dumux/boxmodels/1p2c/1p2cmodel.hh
+++ b/dumux/boxmodels/1p2c/1p2cmodel.hh
@@ -25,7 +25,7 @@
* \file
*
* \brief Base class for all models which use the single-phase,
- * two-component box model
+ * two-component box model.
* Adaption of the BOX scheme to the one-phase two-component flow model.
*/
@@ -45,7 +45,7 @@ namespace Dumux
* \ingroup OnePTwoCBoxModel
* \brief Adaption of the BOX scheme to the one-phase two-component flow model.
*
- * This model implements an one-phase flow of an incompressible fluid, that consists of two components,
+ * This model implements a one-phase flow of a compressible fluid, that consists of two components,
* using a standard Darcy
* approach as the equation for the conservation of momentum:
\f[
@@ -53,17 +53,17 @@ namespace Dumux
\left(\text{grad} p - \varrho g \right)
\f]
*
- * Gravity can be enabled or disabled via the Property system.
+ * Gravity can be enabled or disabled via the property system.
* By inserting this into the continuity equation, one gets
\f[
- - \text{div} \left\{
+ \Phi \frac{\partial \varrho}{\partial t} - \text{div} \left\{
\varrho \frac{K}{\mu} \left(\text{grad} p - \varrho g \right)
\right\} = q \;,
\f]
*
* The transport of the components is described by the following equation:
\f[
- \Phi \varrho \frac{ \partial x}{\partial t} - \text{div} \left( \varrho \frac{K x}{\mu} \left( \text{grad} p -
+ \Phi \frac{ \partial \varrho}{\partial t} - \text{div} \left( \varrho \frac{K x}{\mu} \left( \text{grad} p -
\varrho g \right) + \varrho \tau \Phi D \text{grad} x \right) = q.
\f]
*
@@ -71,7 +71,7 @@ namespace Dumux
* centered finite volume (box) scheme as spatial and
* the implicit Euler method as time discretization.
*
- * The primary variables are the pressure \f$p\f$ and the mole fraction of dissolved component \f$x\f$.
+ * The primary variables are the pressure \f$p\f$ and the mole or mass fraction of dissolved component \f$x\f$.
*/
template<class TypeTag >
@@ -96,6 +96,9 @@ class OnePTwoCBoxModel : public BoxModel<TypeTag>
typedef Dune::FieldVector<Scalar, dimWorld> GlobalPosition;
public:
+ /*!
+ * \brief Constructor. Sets the upwind weight.
+ */
OnePTwoCBoxModel()
{
// retrieve the upwind weight for the mass conservation equations. Use the value
@@ -306,10 +309,10 @@ public:
if (dim > 2)
writer.attachVertexData(velocityZ, "Vz");
#endif
- writer.attachVertexData(moleFrac0, "x_if");
- writer.attachVertexData(moleFrac1, "x_TRAIL");
- writer.attachVertexData(massFrac0, "X_if");
- writer.attachVertexData(massFrac1, "X_TRAIL");
+ writer.attachVertexData(moleFrac0, "x_H2O");
+ writer.attachVertexData(moleFrac1, "x_N2");
+ writer.attachVertexData(massFrac0, "X_H2O");
+ writer.attachVertexData(massFrac1, "X_N2");
// writer.attachVertexData(delFrac, "delFrac_TRAIL");
writer.attachVertexData(rho, "rho");
writer.attachVertexData(mu, "mu");
diff --git a/dumux/boxmodels/1p2c/1p2cproblem.hh b/dumux/boxmodels/1p2c/1p2cproblem.hh
index 8a4ee0dc8d..dd0803b1d9 100644
--- a/dumux/boxmodels/1p2c/1p2cproblem.hh
+++ b/dumux/boxmodels/1p2c/1p2cproblem.hh
@@ -25,7 +25,7 @@
* \file
*
* \brief Base class for all problems which use the single-phase,
- * two-component box model
+ * two-component box model.
*/
#ifndef DUMUX_1P2C_PROBLEM_HH
#define DUMUX_1P2C_PROBLEM_HH
@@ -38,7 +38,7 @@ namespace Dumux
/*!
* \ingroup OnePTwoCBoxModel
* \ingroup BoxBaseProblems
- * \brief Base class for all problems which use the single-phase, two-component box model
+ * \brief Base class for all problems which use the single-phase, two-component box model.
*
*/
template<class TypeTag>
@@ -65,7 +65,7 @@ class OnePTwoCBoxProblem : public BoxProblem<TypeTag>
public:
/*!
- * \brief The constructor
+ * \brief The constructor.
*
* \param timeManager The time manager
* \param gridView The grid view
@@ -85,15 +85,15 @@ public:
// \{
/*!
- * \brief Returns the temperature \f$\mathrm{[K]}\f$ within a control volume.
+ * \brief Return the temperature \f$\mathrm{[K]}\f$ within a control volume.
*
* This is the discretization specific interface for the box
* method. By default it just calls temperature(pos).
*
- * \param element The DUNE Codim<0> enitiy which intersects with
- * the finite volume.
- * \param fvGeom The finite volume geometry of the element.
- * \param scvIdx The local index of the sub control volume inside the element
+ * \param element The DUNE Codim<0> entity which intersects with
+ * the finite volume
+ * \param fvGeom The finite volume geometry of the element
+ * \param scvIdx The local index of the sub-control volume inside the element
*/
Scalar boxTemperature(const Element &element,
const FVElementGeometry fvGeom,
@@ -101,7 +101,7 @@ public:
{ return asImp_().temperatureAtPos(fvGeom.subContVol[scvIdx].global); }
/*!
- * \brief Returns the temperature \f$\mathrm{[K]}\f$ at a given global position.
+ * \brief Return the temperature \f$\mathrm{[K]}\f$ at a given global position.
*
* This is not specific to the discretization. By default it just
* calls temperature().
@@ -112,7 +112,7 @@ public:
{ return asImp_().temperature(); }
/*!
- * \brief Returns the temperature \f$\mathrm{[K]}\f$ for an isothermal problem.
+ * \brief Return the temperature \f$\mathrm{[K]}\f$ for an isothermal problem.
*
* This is not specific to the discretization. By default it just
* throws an exception so it must be overloaded by the problem if
@@ -122,10 +122,15 @@ public:
{ DUNE_THROW(Dune::NotImplemented, "temperature() method not implemented by the actual problem"); };
/*!
- * \brief Returns the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
- *
+ * \brief Return the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
+ *.
* This is the box discretization specific interface. By default
* it just calls gravityAtPos().
+ *
+ * \param element The DUNE Codim<0> entity which intersects with
+ * the finite volume
+ * \param fvGeom The finite volume geometry of the element
+ * \param scvIdx The local index of the sub-control volume inside the element
*/
const Vector &boxGravity(const Element &element,
const FVElementGeometry &fvGeom,
@@ -133,16 +138,18 @@ public:
{ return asImp_().gravityAtPos(fvGeom.subContVol[scvIdx].global); }
/*!
- * \brief Returns the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
+ * \brief Return the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
*
- * This is discretization independent interface. By default it
+ * This is the discretization independent interface. By default it
* just calls gravity().
+ *
+ * \param pos Coordinate vector of the global position
*/
const Vector &gravityAtPos(const GlobalPosition &pos) const
{ return asImp_().gravity(); }
/*!
- * \brief Returns the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
+ * \brief Return the acceleration due to gravity \f$\mathrm{[m/s^2]}\f$.
*
* This method is used for problems where the gravitational
* acceleration does not depend on the spatial position. The
@@ -154,7 +161,7 @@ public:
{ return gravity_; }
/*!
- * \brief Returns the spatial parameters object.
+ * \brief Return the spatial parameters object.
*/
SpatialParameters &spatialParameters()
{ return spatialParams_; }
@@ -168,7 +175,7 @@ public:
// \}
private:
- //! Returns the implementation of the problem (i.e. static polymorphism)
+ //! Return the implementation of the problem (i.e. static polymorphism).
Implementation &asImp_()
{ return *static_cast<Implementation *>(this); }
//! \copydoc asImp_()
diff --git a/dumux/boxmodels/1p2c/1p2cvolumevariables.hh b/dumux/boxmodels/1p2c/1p2cvolumevariables.hh
index 7a919c5ff2..7d774faffd 100644
--- a/dumux/boxmodels/1p2c/1p2cvolumevariables.hh
+++ b/dumux/boxmodels/1p2c/1p2cvolumevariables.hh
@@ -40,7 +40,7 @@ namespace Dumux
/*!
* \ingroup OnePTwoCBoxModel
* \ingroup BoxVolumeVariables
- * \brief Contains the quantities which are are constant within a
+ * \brief Contains the quantities which are constant within a
* finite volume in the single-phase, two-component model.
*/
template <class TypeTag>
@@ -83,7 +83,7 @@ public:
* \param problem The considered problem
* \param element The considered element of the grid
* \param elemGeom The finite-volume geometry in the box scheme
- * \param scvIdx The index of the considered subcontrol volume
+ * \param scvIdx The index of the considered sub-control volume
* \param isOldSol Evaluate function with solution of current or previous time step
*/
void update(const PrimaryVariables &priVars,
@@ -95,6 +95,7 @@ public:
{
ParentType::update(priVars, problem, element, elemGeom, scvIdx, isOldSol);
+ //calculate all secondary variables from the primary variables and store results in fluidstate
completeFluidState(priVars, problem, element, elemGeom, scvIdx, fluidState_);
porosity_ = problem.spatialParameters().porosity(element, elemGeom, scvIdx);
@@ -105,7 +106,7 @@ public:
// Could be avoided if diffusion coefficients also
// became part of the fluid state.
typename FluidSystem::ParameterCache paramCache;
- paramCache.updatePhase(fluidState_, /*phaseIdx=*/0);
+ paramCache.updatePhase(fluidState_, phaseIdx);
diffCoeff_ = FluidSystem::binaryDiffusionCoefficient(fluidState_,
paramCache,
@@ -136,7 +137,7 @@ public:
elemGeom, scvIdx);
fluidState.setTemperature(t);
- fluidState.setPressure(/*phaseIdx=*/0, priVars[pressureIdx]);
+ fluidState.setPressure(phaseIdx, priVars[pressureIdx]);
Scalar x1 = priVars[x1Idx]; //mole or mass fraction of component 1
if(!useMoles) //mass-fraction formulation
@@ -149,17 +150,17 @@ public:
x1 *= meanMolarMass/M1;
}
- fluidState.setMoleFraction(/*phaseIdx=*/0, /*compIdx=*/0, 1 - x1);
- fluidState.setMoleFraction(/*phaseIdx=*/0, /*compIdx=*/1, x1);
+ fluidState.setMoleFraction(phaseIdx, comp0Idx, 1 - x1);
+ fluidState.setMoleFraction(phaseIdx, comp1Idx, x1);
typename FluidSystem::ParameterCache paramCache;
- paramCache.updatePhase(fluidState, /*phaseIdx=*/0);
+ paramCache.updatePhase(fluidState, phaseIdx);
Scalar value;
- value = FluidSystem::density(fluidState, paramCache, /*phaseIdx=*/0);
- fluidState.setDensity(/*phaseIdx=*/0, value);
- value = FluidSystem::viscosity(fluidState, paramCache, /*phaseIdx=*/0);
- fluidState.setViscosity(/*phaseIdx=*/0, value);
+ value = FluidSystem::density(fluidState, paramCache, phaseIdx);
+ fluidState.setDensity(phaseIdx, value);
+ value = FluidSystem::viscosity(fluidState, paramCache, phaseIdx);
+ fluidState.setViscosity(phaseIdx, value);
}
/*!
@@ -170,16 +171,19 @@ public:
{ return fluidState_; }
/*!
- * \brief Returns density the of the fluid phase.
+ * \brief Return density \f$\mathrm{[kg/m^3]}\f$ the of the fluid phase.
*/
Scalar density() const
{ return fluidState_.density(phaseIdx); }
+ /*!
+ * \brief Return molar density \f$\mathrm{[mol/m^3]}\f$ the of the fluid phase.
+ */
Scalar molarDensity() const
{ return fluidState_.molarDensity(phaseIdx);}
/*!
- * \brief Returns mole fraction of a component in the phase
+ * \brief Return mole fraction \f$\mathrm{[mol/mol]}\f$ of a component in the phase.
*
* \param compIdx The index of the component
*/
@@ -187,34 +191,36 @@ public:
{ return fluidState_.moleFraction(phaseIdx, (compIdx==0)?comp0Idx:comp1Idx); }
/*!
- * \brief Returns mass fraction of a component in the phase
+ * \brief Return mass fraction \f$\mathrm{[kg/kg]}\f$ of a component in the phase.
+ *
* \param compIdx The index of the component
*/
Scalar massFraction(int compIdx) const
{ return fluidState_.massFraction(phaseIdx, (compIdx==0)?comp0Idx:comp1Idx); }
/*!
- * \brief Returns concentration of a component in the phase
+ * \brief Return concentration \f$\mathrm{[mol/m^3]}\f$ of a component in the phase.
+ *
* \param compIdx The index of the component
*/
Scalar molarity(int compIdx) const
{ return fluidState_.molarity(phaseIdx, (compIdx==0)?comp0Idx:comp1Idx); }
/*!
- * \brief Returns the effective pressure of a given phase within
+ * \brief Return the effective pressure \f$\mathrm{[Pa]}\f$ of a given phase within
* the control volume.
*/
Scalar pressure() const
{ return fluidState_.pressure(phaseIdx); }
/*!
- * \brief Returns the binary diffusion coefficient in the fluid
+ * \brief Return the binary diffusion coefficient \f$\mathrm{[m^2/s]}\f$ in the fluid.
*/
Scalar diffCoeff() const
{ return diffCoeff_; }
/*!
- * \brief Returns the tortuosity of the streamlines of the fluid.
+ * \brief Return the tortuosity \f$\mathrm{[-]}\f$ of the streamlines of the fluid.
*/
Scalar tortuosity() const
{ return tortuosity_; }
@@ -226,24 +232,24 @@ public:
{ return dispersivity_; }
/*!
- * \brief Returns temperature inside the sub-control volume.
+ * \brief Return temperature \f$\mathrm{[K]}\f$ inside the sub-control volume.
*
* Note that we assume thermodynamic equilibrium, i.e. the
* temperature of the rock matrix and of all fluid phases are
* identical.
*/
Scalar temperature() const
- { return fluidState_.temperature(/*phaseIdx=*/0); }
+ { return fluidState_.temperature(phaseIdx); }
/*!
- * \brief Returns the dynamic viscosity \f$\mathrm{[Pa*s]}\f$ of a given phase
+ * \brief Return the dynamic viscosity \f$\mathrm{[Pa*s]}\f$ of a given phase
* within the control volume.
*/
Scalar viscosity() const
- { return fluidState_.viscosity(/*phaseIdx=*/0); }
+ { return fluidState_.viscosity(phaseIdx); }
/*!
- * \brief Returns the average porosity within the control volume.
+ * \brief Return the average porosity \f$\mathrm{[-]}\f$ within the control volume.
*/
Scalar porosity() const
{ return porosity_; }
@@ -259,7 +265,7 @@ protected:
}
/*!
- * \brief Called by update() to compute the energy related quantities
+ * \brief Called by update() to compute the energy related quantities.
*/
void updateEnergy_(const PrimaryVariables &sol,
const Problem &problem,
diff --git a/dumux/material/fluidsystems/h2on2liquidphasefluidsystem.hh b/dumux/material/fluidsystems/h2on2liquidphasefluidsystem.hh
new file mode 100644
index 0000000000..4886050a0c
--- /dev/null
+++ b/dumux/material/fluidsystems/h2on2liquidphasefluidsystem.hh
@@ -0,0 +1,634 @@
+// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
+// vi: set et ts=4 sw=4 sts=4:
+/*****************************************************************************
+ * Copyright (C) 2012 by Katherina Baber
+ * Copyright (C) 2009-2011 by Andreas Lauser *
+ * Institute for Modelling Hydraulic and Environmental Systems *
+ * University of Stuttgart, Germany *
+ * email: <givenname>.<name>@iws.uni-stuttgart.de *
+ * *
+ * This program is free software: you can redistribute it and/or modify *
+ * it under the terms of the GNU General Public License as published by *
+ * the Free Software Foundation, either version 2 of the License, or *
+ * (at your option) any later version. *
+ * *
+ * This program is distributed in the hope that it will be useful, *
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of *
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the *
+ * GNU General Public License for more details. *
+ * *
+ * You should have received a copy of the GNU General Public License *
+ * along with this program. If not, see <http://www.gnu.org/licenses/>. *
+ *****************************************************************************/
+/*!
+ * \file
+ *
+ * \brief A one-phase (water-phase) fluid system with water and nitrogen as components.
+ */
+#ifndef DUMUX_H2O_N2_LIQUIDPHASE_FLUID_SYSTEM_HH
+#define DUMUX_H2O_N2_LIQUIDPHASE_FLUID_SYSTEM_HH
+
+#include <dumux/material/idealgas.hh>
+
+#include <dumux/material/components/n2.hh>
+#include <dumux/material/components/h2o.hh>
+#include <dumux/material/components/simpleh2o.hh>
+#include <dumux/material/components/tabulatedcomponent.hh>
+#include <dumux/material/binarycoefficients/h2o_n2.hh>
+
+#include <dumux/common/valgrind.hh>
+#include <dumux/common/exceptions.hh>
+
+#include <dumux/material/fluidsystems/basefluidsystem.hh>
+
+#include <assert.h>
+
+#ifdef DUMUX_PROPERTIES_HH
+#include <dumux/common/basicproperties.hh>
+#include <dumux/material/fluidsystems/defaultcomponents.hh>
+#endif
+
+namespace Dumux
+{
+namespace FluidSystems
+{
+
+/*!
+ * \ingroup Fluidsystems
+ *
+ * \brief A one-phase (water-phase) fluid system with water and nitrogen as components.
+ *
+ * This FluidSystem can be used without the PropertySystem that is applied in Dumux,
+ * as all Parameters are defined via template parameters. Hence it is in an
+ * additional namespace Dumux::FluidSystems::.
+ * An adapter class using Dumux::FluidSystem<TypeTag> is also provided
+ * at the end of this file.
+ */
+template <class Scalar, bool useComplexRelations = true>
+class H2ON2LiquidPhase
+ : public BaseFluidSystem<Scalar, H2ON2LiquidPhase<Scalar, useComplexRelations> >
+{
+ typedef H2ON2LiquidPhase<Scalar, useComplexRelations> ThisType;
+ typedef BaseFluidSystem<Scalar, ThisType> Base;
+
+ // convenience typedefs
+ typedef Dumux::IdealGas<Scalar> IdealGas;
+ typedef Dumux::H2O<Scalar> IapwsH2O;
+ typedef Dumux::TabulatedComponent<Scalar, IapwsH2O > TabulatedH2O;
+ typedef Dumux::N2<Scalar> SimpleN2;
+
+public:
+ /****************************************
+ * Fluid phase related static parameters
+ ****************************************/
+
+ //! Number of phases in the fluid system
+ static constexpr int numPhases = 1;
+
+ //! Index of the liquid phase
+ static constexpr int lPhaseIdx = 0;
+ static constexpr int wPhaseIdx = lPhaseIdx;
+
+ /*!
+ * \brief Return the human readable name of a fluid phase.
+ *
+ * \param phaseIdx The index of the fluid phase to consider
+ */
+ static const char *phaseName(int phaseIdx)
+ {
+ static const char *name[] = {
+ "l"
+ };
+
+ assert(0 <= phaseIdx && phaseIdx < numPhases);
+ return name[phaseIdx];
+ }
+
+ /*!
+ * \brief Return whether a phase is liquid.
+ *
+ * \param phaseIdx The index of the fluid phase to consider
+ */
+ static bool isLiquid(int phaseIdx)
+ {
+ assert(0 <= phaseIdx && phaseIdx < numPhases);
+ return true; //only water phase present
+ }
+
+ /*!
+ * \brief Returns true if and only if a fluid phase is assumed to
+ * be an ideal mixture.
+ *
+ * We define an ideal mixture as a fluid phase where the fugacity
+ * coefficients of all components times the pressure of the phase
+ * are independent on the fluid composition. This assumption is true
+ * if Henry's law and Rault's law apply. If you are unsure what
+ * this function should return, it is safe to return false. The
+ * only damage done will be (slightly) increased computation times
+ * in some cases.
+ *
+ * \param phaseIdx The index of the fluid phase to consider
+ */
+ static bool isIdealMixture(int phaseIdx)
+ {
+ assert(0 <= phaseIdx && phaseIdx < numPhases);
+ // we assume Henry's and Rault's laws for the water phase and
+ // and no interaction between gas molecules of different
+ // components, so all phases are ideal mixtures!
+ return true;
+ }
+
+ /*!
+ * \brief Returns true if and only if a fluid phase is assumed to
+ * be compressible.
+ *
+ * Compressible means that the partial derivative of the density
+ * to the fluid pressure is always larger than zero.
+ *
+ * \param phaseIdx The index of the fluid phase to consider
+ */
+ static bool isCompressible(int phaseIdx)
+ {
+ assert(0 <= phaseIdx && phaseIdx < numPhases);
+ // the water component decides for the liquid phase...
+ return H2O::liquidIsCompressible();
+ }
+
+ /*!
+ * \brief Returns true if and only if a fluid phase is assumed to
+ * be an ideal gas.
+ *
+ * \param phaseIdx The index of the fluid phase to consider
+ */
+ static bool isIdealGas(int phaseIdx)
+ {
+ assert(0 <= phaseIdx && phaseIdx < numPhases);
+ return false; // not a gas (only liquid phase present)
+ }
+
+ /****************************************
+ * Component related static parameters
+ ****************************************/
+
+ //! Number of components in the fluid system
+ static constexpr int numComponents = 2;
+
+ static constexpr int H2OIdx = 0;
+ static constexpr int N2Idx = 1;
+
+ //! The components for pure water
+ typedef TabulatedH2O H2O;
+ //typedef SimpleH2O H2O;
+ //typedef IapwsH2O H2O;
+
+ //! The components for pure nitrogen
+ typedef SimpleN2 N2;
+
+ /*!
+ * \brief Return the human readable name of a component
+ *
+ * \param compIdx The index of the component to consider
+ */
+ static const char *componentName(int compIdx)
+ {
+ static const char *name[] = {
+ H2O::name(),
+ N2::name()
+ };
+
+ assert(0 <= compIdx && compIdx < numComponents);
+ return name[compIdx];
+ }
+
+ /*!
+ * \brief Return the molar mass of a component in [kg/mol].
+ *
+ * \param compIdx The index of the component to consider
+ */
+ static Scalar molarMass(int compIdx)
+ {
+ static const Scalar M[] = {
+ H2O::molarMass(),
+ N2::molarMass(),
+ };
+
+ assert(0 <= compIdx && compIdx < numComponents);
+ return M[compIdx];
+ }
+
+ /*!
+ * \brief Critical temperature of a component [K].
+ *
+ * \param compIdx The index of the component to consider
+ */
+ static Scalar criticalTemperature(int compIdx)
+ {
+ static const Scalar Tcrit[] = {
+ H2O::criticalTemperature(), // H2O
+ N2::criticalTemperature() // N2
+ };
+
+ assert(0 <= compIdx && compIdx < numComponents);
+ return Tcrit[compIdx];
+ }
+
+ /*!
+ * \brief Critical pressure of a component [Pa].
+ *
+ * \param compIdx The index of the component to consider
+ */
+ static Scalar criticalPressure(int compIdx)
+ {
+ static const Scalar pcrit[] = {
+ H2O::criticalPressure(),
+ N2::criticalPressure()
+ };
+
+ assert(0 <= compIdx && compIdx < numComponents);
+ return pcrit[compIdx];
+ }
+
+ /*!
+ * \brief Molar volume of a component at the critical point [m^3/mol].
+ *
+ * \param compIdx The index of the component to consider
+ */
+ static Scalar criticalMolarVolume(int compIdx)
+ {
+ DUNE_THROW(Dune::NotImplemented,
+ "H2ON2OnePhaseFluidSystem::criticalMolarVolume()");
+ return 0;
+ }
+
+ /*!
+ * \brief The acentric factor of a component [].
+ *
+ * \param compIdx The index of the component to consider
+ */
+ static Scalar acentricFactor(int compIdx)
+ {
+ static const Scalar accFac[] = {
+ H2O::acentricFactor(), // H2O (from Reid, et al.)
+ N2::acentricFactor()
+ };
+
+ assert(0 <= compIdx && compIdx < numComponents);
+ return accFac[compIdx];
+ }
+
+ /****************************************
+ * thermodynamic relations
+ ****************************************/
+
+ /*!
+ * \brief Initialize the fluid system's static parameters generically.
+ *
+ * If a tabulated H2O component is used, we do our best to create
+ * tables that always work.
+ */
+ static void init()
+ {
+ init(/*tempMin=*/273.15,
+ /*tempMax=*/623.15,
+ /*numTemp=*/100,
+ /*pMin=*/0.0,
+ /*pMax=*/20e6,
+ /*numP=*/200);
+ }
+
+ /*!
+ * \brief Initialize the fluid system's static parameters using
+ * problem specific temperature and pressure ranges.
+ *
+ * \param tempMin The minimum temperature used for tabulation of water [K]
+ * \param tempMax The maximum temperature used for tabulation of water [K]
+ * \param nTemp The number of ticks on the temperature axis of the table of water
+ * \param pressMin The minimum pressure used for tabulation of water [Pa]
+ * \param pressMax The maximum pressure used for tabulation of water [Pa]
+ * \param nPress The number of ticks on the pressure axis of the table of water
+ */
+ static void init(Scalar tempMin, Scalar tempMax, unsigned nTemp,
+ Scalar pressMin, Scalar pressMax, unsigned nPress)
+ {
+ if (useComplexRelations)
+ std::cout << "Using complex H2O-N2 fluid system\n";
+ else
+ std::cout << "Using fast H2O-N2 fluid system\n";
+
+ if (H2O::isTabulated) {
+ std::cout << "Initializing tables for the H2O fluid properties ("
+ << nTemp*nPress
+ << " entries).\n";
+
+ TabulatedH2O::init(tempMin, tempMax, nTemp,
+ pressMin, pressMax, nPress);
+ }
+ }
+
+ /*!
+ * \brief Calculate the density [kg/m^3] of a fluid phase.
+ *
+ * If useComplexRelations == true, we apply
+ * Formula (2.6) from S.O.Ochs:
+ * "Development of a multi-phase multicomponent
+ * model for PEMFC - Technical report: IRTG-NUPUS",
+ * University of Stuttgart, 2008
+ *
+ * \param fluidState An arbitrary fluid state
+ * \param phaseIdx The index of the fluid phase to consider
+ */
+ using Base::density;
+ template <class FluidState>
+ static Scalar density(const FluidState &fluidState,
+ int phaseIdx)
+ {
+ assert(0 <= phaseIdx && phaseIdx < numPhases);
+
+ Scalar T = fluidState.temperature(phaseIdx);
+ Scalar p = fluidState.pressure(phaseIdx);
+
+ Scalar sumMoleFrac = 0;
+ for (int compIdx = 0; compIdx < numComponents; ++compIdx)
+ sumMoleFrac += fluidState.moleFraction(phaseIdx, compIdx);
+
+ // liquid phase
+ if (phaseIdx == lPhaseIdx) {
+ if (!useComplexRelations)
+ // assume pure water
+ return H2O::liquidDensity(T, p);
+ else
+ {
+ // See: Ochs 2008
+ Scalar rholH2O = H2O::liquidDensity(T, p);
+ Scalar clH2O = rholH2O/H2O::molarMass();
+
+ // this assumes each nitrogen molecule displaces exactly one
+ // water molecule in the liquid
+ return
+ clH2O
+ * (H2O::molarMass()*fluidState.moleFraction(lPhaseIdx, H2OIdx)
+ +
+ N2::molarMass()*fluidState.moleFraction(lPhaseIdx, N2Idx))
+ / sumMoleFrac;
+ }
+ }
+ else //gas phase index
+ DUNE_THROW(Dune::InvalidStateException, "Invalid phase index " << phaseIdx);
+ }
+
+ /*!
+ * \brief Calculate the dynamic viscosity of a fluid phase [Pa*s].
+ *
+ * \param fluidState An arbitrary fluid state
+ * \param phaseIdx The index of the fluid phase to consider
+ */
+ using Base::viscosity;
+ template <class FluidState>
+ static Scalar viscosity(const FluidState &fluidState,
+ int phaseIdx)
+ {
+ assert(0 <= phaseIdx && phaseIdx < numPhases);
+
+ Scalar T = fluidState.temperature(phaseIdx);
+ Scalar p = fluidState.pressure(phaseIdx);
+
+ // liquid phase
+ if (phaseIdx == lPhaseIdx) {
+ // assume pure water for the liquid phase
+ return H2O::liquidViscosity(T, p);
+ }
+ else //gas phase index
+ DUNE_THROW(Dune::InvalidStateException, "Invalid phase index " << phaseIdx);
+ }
+
+ /*!
+ * \brief Calculate the fugacity coefficient [Pa] of an individual
+ * component in a fluid phase.
+ *
+ * The fugacity coefficient \f$\phi^\kappa_\alpha\f$ of
+ * component \f$\kappa\f$ in phase \f$\alpha\f$ is connected to
+ * the fugacity \f$f^\kappa_\alpha\f$ and the component's mole
+ * fraction \f$x^\kappa_\alpha\f$ by means of the relation
+ *
+ * \f[
+ f^\kappa_\alpha = \phi^\kappa_\alpha\;x^\kappa_\alpha\;p_\alpha
+ \f]
+ * where \f$p_\alpha\f$ is the pressure of the fluid phase.
+ *
+ * The quantity "fugacity" itself is just an other way to express
+ * the chemical potential \f$\zeta^\kappa_\alpha\f$ of the
+ * component. It is defined via
+ *
+ * \f[
+ f^\kappa_\alpha := \exp\left\{\frac{\zeta^\kappa_\alpha}{k_B T_\alpha} \right\}
+ \f]
+ * where \f$k_B = 1.380\cdot10^{-23}\;J/K\f$ is the Boltzmann constant.
+ *
+ * \param fluidState An arbitrary fluid state
+ * \param phaseIdx The index of the fluid phase to consider
+ * \param compIdx The index of the component to consider
+ */
+ using Base::fugacityCoefficient;
+ template <class FluidState>
+ static Scalar fugacityCoefficient(const FluidState &fluidState,
+ int phaseIdx,
+ int compIdx)
+ {
+ assert(0 <= phaseIdx && phaseIdx < numPhases);
+ assert(0 <= compIdx && compIdx < numComponents);
+
+ Scalar T = fluidState.temperature(phaseIdx);
+ Scalar p = fluidState.pressure(phaseIdx);
+
+ // liquid phase
+ if (phaseIdx == lPhaseIdx) {
+ if (compIdx == H2OIdx)
+ return H2O::vaporPressure(T)/p;
+ return Dumux::BinaryCoeff::H2O_N2::henry(T)/p;
+ }
+ else //gas phase index
+ DUNE_THROW(Dune::InvalidStateException, "Invalid phase index " << phaseIdx);
+ }
+
+
+ /*!
+ * \brief Calculate the molecular diffusion coefficient for a
+ * component in a fluid phase [mol^2 * s / (kg*m^3)].
+ *
+ * Molecular diffusion of a compoent \f$\kappa\f$ is caused by a
+ * gradient of the chemical potential and follows the law
+ *
+ * \f[ J = - D \mathbf{grad} mu_\kappa \f]
+ *
+ * where \f$\mu_\kappa\f$ is the component's chemical potential,
+ * \f$D\f$ is the diffusion coefficient and \f$J\f$ is the
+ * diffusive flux. \f$mu_\kappa\f$ is connected to the component's
+ * fugacity \f$f_\kappa\f$ by the relation
+ *
+ * \f[ \mu_\kappa = R T_\alpha \mathrm{ln} \frac{f_\kappa}{p_\alpha} \f]
+ *
+ * where \f$p_\alpha\f$ and \f$T_\alpha\f$ are the fluid phase'
+ * pressure and temperature.
+ *
+ * \param fluidState An arbitrary fluid state
+ * \param phaseIdx The index of the fluid phase to consider
+ * \param compIdx The index of the component to consider
+ */
+ using Base::diffusionCoefficient;
+ template <class FluidState>
+ static Scalar diffusionCoefficient(const FluidState &fluidState,
+ int phaseIdx,
+ int compIdx)
+ {
+ // TODO!
+ DUNE_THROW(Dune::NotImplemented, "Diffusion coefficients");
+ }
+
+ /*!
+ * \brief Given a phase's composition, temperature and pressure,
+ * return the binary diffusion coefficient for components
+ * \f$i\f$ and \f$j\f$ in this phase.
+ *
+ * \param fluidState An arbitrary fluid state
+ * \param phaseIdx The index of the fluid phase to consider
+ * \param compIIdx The index of the first component to consider
+ * \param compJIdx The index of the second component to consider
+ */
+ using Base::binaryDiffusionCoefficient;
+ template <class FluidState>
+ static Scalar binaryDiffusionCoefficient(const FluidState &fluidState,
+ int phaseIdx,
+ int compIIdx,
+ int compJIdx)
+
+ {
+ static Scalar undefined(1e10);
+ Valgrind::SetUndefined(undefined);
+
+ if (compIIdx > compJIdx)
+ std::swap(compIIdx, compJIdx);
+
+#ifndef NDEBUG
+ if (compIIdx == compJIdx ||
+ phaseIdx > numPhases - 1 ||
+ compJIdx > numComponents - 1)
+ {
+ DUNE_THROW(Dune::InvalidStateException,
+ "Binary diffusion coefficient of components "
+ << compIIdx << " and " << compJIdx
+ << " in phase " << phaseIdx << " is undefined!\n");
+ }
+#endif
+
+ Scalar T = fluidState.temperature(phaseIdx);
+ Scalar p = fluidState.pressure(phaseIdx);
+
+ // liquid phase
+ if (phaseIdx == lPhaseIdx) {
+ if (compIIdx == H2OIdx && compJIdx == N2Idx)
+ return BinaryCoeff::H2O_N2::liquidDiffCoeff(T, p);
+ return undefined;
+ }
+ else //gas phase index
+ DUNE_THROW(Dune::InvalidStateException, "Invalid phase index " << phaseIdx);
+ }
+
+ /*!
+ * \brief Given a phase's composition, temperature, pressure and
+ * density, calculate its specific enthalpy [J/kg].
+ *
+ * \todo This fluid system neglects the contribution of
+ * gas-molecules in the liquid phase. This contribution is
+ * probably not big. Somebody would have to find out the
+ * enthalpy of solution for this system. ...
+ *
+ * \param fluidState An arbitrary fluid state
+ * \param phaseIdx The index of the fluid phase to consider
+ */
+ using Base::enthalpy;
+ template <class FluidState>
+ static Scalar enthalpy(const FluidState &fluidState,
+ int phaseIdx)
+ {
+ Scalar T = fluidState.temperature(phaseIdx);
+ Scalar p = fluidState.pressure(phaseIdx);
+ Valgrind::CheckDefined(T);
+ Valgrind::CheckDefined(p);
+
+ // liquid phase
+ if (phaseIdx == lPhaseIdx) {
+ // TODO: correct way to deal with the solutes???
+ return H2O::liquidEnthalpy(T, p);
+ }
+ else //gas phase index
+ DUNE_THROW(Dune::InvalidStateException, "Invalid phase index " << phaseIdx);
+ }
+
+ /*!
+ * \brief Thermal conductivity of a fluid phase [W/(m K)].
+ *
+ * Use the conductivity of water as a first approximation.
+ *
+ * \param fluidState An arbitrary fluid state
+ * \param phaseIdx The index of the fluid phase to consider
+ */
+ using Base::thermalConductivity;
+ template <class FluidState>
+ static Scalar thermalConductivity(const FluidState &fluidState,
+ const int phaseIdx)
+ {
+ assert(0 <= phaseIdx && phaseIdx < numPhases);
+
+ if (phaseIdx == lPhaseIdx){// liquid phase
+ if(useComplexRelations){
+ Scalar temperature = fluidState.temperature(phaseIdx) ;
+ Scalar pressure = fluidState.pressure(phaseIdx);
+ return H2O::liquidThermalConductivity(temperature, pressure);
+ }
+ else
+ return 0.578078; // conductivity of water[W / (m K ) ] IAPWS evaluated at p=.1 MPa, T=8C
+ }
+ else //gas phase index
+ DUNE_THROW(Dune::InvalidStateException, "Invalid phase index " << phaseIdx);
+ }
+
+ /*!
+ * \brief Specific isobaric heat capacity of a fluid phase.
+ * \f$\mathrm{[J/kg]}\f$.
+ *
+ * \param fluidState An arbitrary fluid state
+ * \param phaseIdx The index of the fluid phase to consider
+ */
+ using Base::heatCapacity;
+ template <class FluidState>
+ static Scalar heatCapacity(const FluidState &fluidState,
+ int phaseIdx)
+ {
+ if (phaseIdx == lPhaseIdx) {
+ return H2O::liquidHeatCapacity(fluidState.temperature(phaseIdx),
+ fluidState.pressure(phaseIdx));
+ }
+ else //gas phase index
+ DUNE_THROW(Dune::InvalidStateException, "Invalid phase index " << phaseIdx);
+ }
+};
+
+} // end namepace FluidSystems
+
+#ifdef DUMUX_PROPERTIES_HH
+/*!
+ * \brief A one-phase fluid system with water and nitrogen as components.
+ *
+ * This is an adapter to use Dumux::H2ON2OnePhaseFluidSystem<TypeTag>, as is
+ * done with most other classes in Dumux.
+ */
+template<class TypeTag>
+class H2ON2LiquidPhaseFluidSystem
+: public FluidSystems::H2ON2LiquidPhase<typename GET_PROP_TYPE(TypeTag, Scalar),
+ GET_PROP_VALUE(TypeTag, EnableComplicatedFluidSystem)>
+{};
+#endif
+
+} // end namepace
+
+#endif
diff --git a/test/boxmodels/1p/1ptest-reference.vtu b/test/boxmodels/1p/1ptest-reference.vtu
index 0cd12c469e..1c9f844ba2 100644
--- a/test/boxmodels/1p/1ptest-reference.vtu
+++ b/test/boxmodels/1p/1ptest-reference.vtu
@@ -4,18 +4,31 @@
<Piece NumberOfCells="100" NumberOfPoints="121">
<PointData Scalars="p">
<DataArray type="Float32" Name="p" NumberOfComponents="1" format="ascii">
- 200000 200000 190000 190000 200000 190000 200000 190000 200000 190000 200000 190000
- 200000 190000 200000 190000 200000 190000 200000 190000 200000 190000 180000 180000
- 180000 180000 180000 180000 180000 180000 180000 180000 180000 170000 170000 170000
- 170000 170000 170000 170000 170000 170000 170000 170000 160000 160000 160000 160000
- 160000 160000 160000 160000 160000 160000 160000 150000 150000 150000 150000 150000
- 150000 150000 150000 150000 150000 150000 140000 140000 140000 140000 140000 140000
- 140000 140000 140000 140000 140000 130000 130000 130000 130000 130000 130000 130000
- 130000 130000 130000 130000 120000 120000 120000 120000 120000 120000 120000 120000
- 120000 120000 120000 110000 110000 110000 110000 110000 110000 110000 110000 110000
- 110000 110000 100000 100000 100000 100000 100000 100000 100000 100000 100000 100000
+ 200000 200000 191207 191581 200000 192887 200000 194783 200000 196179 200000 196611
+ 200000 196179 200000 194783 200000 192887 200000 191581 200000 191207 181806 182275
+ 184427 190784 193272 194034 193272 190784 184427 182275 181806 171621 171876 172210
+ 178567 182873 183849 182873 178567 172210 171876 171621 160910 160982 161193 163089
+ 165581 166314 165581 163089 161193 160982 160910 150000 150000 150000 150000 150000
+ 150000 150000 150000 150000 150000 150000 139090 139018 138807 136911 134419 133686
+ 134419 136911 138807 139018 139090 128379 128124 127790 121433 117127 116151 117127
+ 121433 127790 128124 128379 118194 117725 115573 109216 106728 105966 106728 109216
+ 115573 117725 118194 108793 108419 107113 105217 103821 103389 103821 105217 107113
+ 108419 108793 100000 100000 100000 100000 100000 100000 100000 100000 100000 100000
100000
</DataArray>
+ <DataArray type="Float32" Name="K" NumberOfComponents="1" format="ascii">
+ 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10
+ 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10
+ 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10
+ 1e-12 1e-12 1e-12 1e-12 1e-12 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-12
+ 1e-12 1e-12 1e-12 1e-12 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-12 1e-12
+ 1e-12 1e-12 1e-12 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-12 1e-12 1e-12
+ 1e-12 1e-12 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-12 1e-12 1e-12 1e-12
+ 1e-12 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10
+ 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10
+ 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10 1e-10
+ 1e-10
+ </DataArray>
</PointData>
<CellData Scalars="process rank">
<DataArray type="Float32" Name="process rank" NumberOfComponents="1" format="ascii">
diff --git a/test/boxmodels/1p/1ptestproblem.hh b/test/boxmodels/1p/1ptestproblem.hh
index cec00d0408..9f5699e806 100644
--- a/test/boxmodels/1p/1ptestproblem.hh
+++ b/test/boxmodels/1p/1ptestproblem.hh
@@ -23,7 +23,8 @@
/*!
* \file
*
- * \brief A test problem for the one-phase box model
+ * \brief A test problem for the one-phase box model:
+ * water is flowing from bottom to top through and around a low permeable lens.
*/
#ifndef DUMUX_1PTEST_PROBLEM_HH
#define DUMUX_1PTEST_PROBLEM_HH
@@ -98,6 +99,9 @@ SET_BOOL_PROP(OnePTestProblem, EnableGravity, true);
* except the top and bottom boundaries (Dirichlet), where water is
* flowing from bottom to top.
*
+ * In the middle of the domain, a lens with low permeability (\f$ K=10e-12f$)
+ * compared to the surrounding material (\f$ K=10e-10f$) is defined.
+ *
* To run the simulation execute the following line in shell:
* <tt>./test_1p grids/1p_2d.dgf 10 0.01</tt>
* where start simulation time = 0.01 second, end simulation time = 10 seconds
@@ -157,12 +161,12 @@ public:
{ return "1ptest"; }
/*!
- * \brief Returns the temperature within the domain.
+ * \brief Return the temperature within the domain.
*
* This problem assumes a temperature of 10 degrees Celsius.
*/
Scalar temperature() const
- { return 273.15 + 10; } // 10°C
+ { return 273.15 + 10; } // 10C
// \}
void sourceAtPos(PrimaryVariables &values,
@@ -177,7 +181,7 @@ public:
// \{
/*!
- * \brief Specifies which kind of boundary condition should be
+ * \brief Specify which kind of boundary condition should be
* used for which equation on a given boundary segment.
*/
void boundaryTypes(BoundaryTypes &values, const Vertex &vertex) const
@@ -192,7 +196,7 @@ public:
}
/*!
- * \brief Evaluate the boundary conditions for a dirichlet
+ * \brief Evaluate the boundary conditions for a Dirichlet
* boundary segment.
*
* For this method, the \a values parameter stores primary variables.
diff --git a/test/boxmodels/1p/1ptestspatialparameters.hh b/test/boxmodels/1p/1ptestspatialparameters.hh
index bad4962030..085f6591db 100644
--- a/test/boxmodels/1p/1ptestspatialparameters.hh
+++ b/test/boxmodels/1p/1ptestspatialparameters.hh
@@ -49,12 +49,37 @@ class OnePTestSpatialParameters : public BoxSpatialParametersOneP<TypeTag>
typedef typename GET_PROP_TYPE(TypeTag, GridView) GridView;
typedef typename GET_PROP_TYPE(TypeTag, FVElementGeometry) FVElementGeometry;
+ enum {
+ dim=GridView::dimension,
+ dimWorld=GridView::dimensionworld
+ };
+
+ typedef Dune::FieldVector<Scalar,dimWorld> GlobalPosition;
typedef typename GridView::template Codim<0>::Entity Element;
public:
OnePTestSpatialParameters(const GridView& gridView)
: ParentType(gridView)
- {}
+ {
+ try
+ {
+ lensLowerLeft_[0] = GET_RUNTIME_PARAM(TypeTag, Scalar, SpatialParameters.lensLowerLeftX);
+ lensLowerLeft_[1] = GET_RUNTIME_PARAM(TypeTag, Scalar, SpatialParameters.lensLowerLeftY);
+ lensUpperRight_[0] = GET_RUNTIME_PARAM(TypeTag, Scalar, SpatialParameters.lensUpperRightX);
+ lensUpperRight_[1] = GET_RUNTIME_PARAM(TypeTag, Scalar, SpatialParameters.lensUpperRightY);
+
+ permeability_ = GET_RUNTIME_PARAM(TypeTag, Scalar, SpatialParameters.permeability);
+ permeabilityLens_=GET_RUNTIME_PARAM(TypeTag, Scalar, SpatialParameters.permeabilityLens);
+ }
+ catch (Dumux::ParameterException &e) {
+ std::cerr << e << ". Abort!\n";
+ exit(1) ;
+ }
+ catch (...) {
+ std::cerr << "Unknown exception thrown!\n";
+ exit(1);
+ }
+ }
/*!
* \brief Apply the intrinsic permeability tensor to a pressure
@@ -68,7 +93,14 @@ public:
Scalar intrinsicPermeability(const Element &element,
const FVElementGeometry &fvElemGeom,
int scvIdx) const
- { return 1e-10; }
+ {
+ const GlobalPosition &globalPos = fvElemGeom.subContVol[scvIdx].global;
+
+ if (isInLens_(globalPos))
+ return permeabilityLens_;
+ else
+ return permeability_;
+ }
/*! \brief Define the porosity.
*
@@ -80,9 +112,22 @@ public:
const FVElementGeometry &fvElemGeom,
int scvIdx) const
{ return 0.4; }
-};
+private:
+ bool isInLens_(const GlobalPosition &pos) const
+ {
+ for (int i = 0; i < dim; ++i) {
+ if (pos[i] < lensLowerLeft_[i] || pos[i] > lensUpperRight_[i])
+ return false;
+ }
+ return true;
+ }
+
+ GlobalPosition lensLowerLeft_;
+ GlobalPosition lensUpperRight_;
+ Scalar permeability_, permeabilityLens_;
+};
} // end namespace
#endif
diff --git a/test/boxmodels/1p/test_1p.input b/test/boxmodels/1p/test_1p.input
index ea0d612ffe..2a1984fbe8 100644
--- a/test/boxmodels/1p/test_1p.input
+++ b/test/boxmodels/1p/test_1p.input
@@ -1,24 +1,38 @@
#############################################################
-# Parameter file for test_1p #
-# Everything behind a '#' is a comment #
-# Groups can be ordered e.g. : [BoundaryConditions], #
-# see ../2p2c/ for a more detailed example #
+# Parameter file for test_1p #
+# Everything behind a '#' is a comment #
+# Groups can be ordered e.g. : [BoundaryConditions], #
+# see ../2p2c/ for a more detailed example #
#############################################################
#############################################################
-# Mandatory arguments #
+# Mandatory arguments #
#############################################################
dtInitial =1 # seconds
tEnd =1 # seconds
gridFile =./grids/test_1p_2d.dgf
+##########################################################################
+# Simulation restart #
+# #
+# DuMux simulations can be restarted from *.drs files #
+# Set restart to the value of a specific file, e.g.: 'restart = 27184.1'#
+# for the restart file #
+# name_time=27184.1_rank=0.drs #
+# Please comment in the below value, if restart is desired. #
+##########################################################################
+# restart= ...
+
#####################################################################
-# Simulation restart #
-# #
-# DuMux simulations can be restarted from *.drs files #
-# Set restart to the value of a specific file, e.g.: 'restart = 27184.1' #
-# for the restart file #
-# name_time=27184.1_rank=0.drs #
-# Please comment in the below value, if restart is desired. #
+# SpatialParameters #
#####################################################################
-# restart= ...
\ No newline at end of file
+[SpatialParameters]
+#lens from (0.25|0.25) to (0.75|0.75) box-wise definition of permability
+lensLowerLeftX = 0.25
+lensLowerLeftY = 0.25
+lensUpperRightX = 0.75
+lensUpperRightY = 0.75
+
+#permeabilities
+permeability = 1e-10
+permeabilityLens= 1e-12
\ No newline at end of file
diff --git a/test/boxmodels/1p2c/grids/test_1p2c.dgf b/test/boxmodels/1p2c/grids/test_1p2c.dgf
index 2a818f5eb3..1a778b5473 100644
--- a/test/boxmodels/1p2c/grids/test_1p2c.dgf
+++ b/test/boxmodels/1p2c/grids/test_1p2c.dgf
@@ -1,8 +1,8 @@
DGF
Interval
0 0 % first corner
-22e-3 22e-3 % second corner
-44 44 % number of cells in x and y direction
+1 1 % second corner
+20 2 % number of cells in x and y direction
#
BOUNDARYDOMAIN
diff --git a/test/boxmodels/1p2c/test_1p2c.cc b/test/boxmodels/1p2c/test_1p2c.cc
index 18054b3987..6048e23526 100644
--- a/test/boxmodels/1p2c/test_1p2c.cc
+++ b/test/boxmodels/1p2c/test_1p2c.cc
@@ -58,6 +58,6 @@ void usage(const char *progName, const std::string &errorMsg)
int main(int argc, char** argv)
{
- typedef TTAG(TissueTumorProblem) ProblemTypeTag;
+ typedef TTAG(OnePTwoCOutflowProblem) ProblemTypeTag;
return Dumux::startWithParameters<ProblemTypeTag>(argc, argv, usage);
}
diff --git a/test/boxmodels/1p2c/test_1p2c.input b/test/boxmodels/1p2c/test_1p2c.input
index d885b1bec9..98b7b3305c 100644
--- a/test/boxmodels/1p2c/test_1p2c.input
+++ b/test/boxmodels/1p2c/test_1p2c.input
@@ -1,24 +1,24 @@
#############################################################
-# Parameter file for test_1p2c #
-# Everything behind a '#' is a comment #
-# Groups can be ordered e.g. : [BoundaryConditions], #
-# see ../2p2c/ for a more detailed example #
+# Parameter file for test_1p2c #
+# Everything behind a '#' is a comment #
+# Groups can be ordered e.g. : [BoundaryConditions], #
+# see ../2p2c/ for a more detailed example #
#############################################################
#############################################################
-# Mandatory arguments #
+# Mandatory arguments #
#############################################################
-dtInitial =1e3 # seconds
-tEnd =2e3 # seconds
+dtInitial =1 # seconds
+tEnd =100 # seconds
gridFile =./grids/test_1p2c.dgf
-#####################################################################
-# Simulation restart #
-# #
-# DuMux simulations can be restarted from *.drs files #
-# Set restart to the value of a specific file, e.g.: 'restart = 27184.1' #
-# for the restart file #
-# name_time=27184.1_rank=0.drs #
-# Please comment in the below value, if restart is desired. #
-#####################################################################
+##########################################################################
+# Simulation restart #
+# #
+# DuMux simulations can be restarted from *.drs files #
+# Set restart to the value of a specific file, e.g.: 'restart = 27184.1'#
+# for the restart file #
+# name_time=27184.1_rank=0.drs #
+# Please comment in the below value, if restart is desired. #
+##########################################################################
# restart= ...
\ No newline at end of file
diff --git a/test/boxmodels/1p2c/tissue-reference.vtu b/test/boxmodels/1p2c/tissue-reference.vtu
index 37feda7536..686831dde6 100644
--- a/test/boxmodels/1p2c/tissue-reference.vtu
+++ b/test/boxmodels/1p2c/tissue-reference.vtu
@@ -1,1879 +1,91 @@
<?xml version="1.0"?>
<VTKFile type="UnstructuredGrid" version="0.1" byte_order="LittleEndian">
<UnstructuredGrid>
- <Piece NumberOfCells="1936" NumberOfPoints="2025">
+ <Piece NumberOfCells="40" NumberOfPoints="63">
<PointData Scalars="P">
<DataArray type="Float32" Name="P" NumberOfComponents="1" format="ascii">
- 0 0 0 5.41738e-08 0 1.08347e-07 0 1.62511e-07 0 2.16644e-07 0 2.70705e-07
- 0 3.24621e-07 0 3.78288e-07 0 4.31561e-07 0 4.84248e-07 0 5.36106e-07 0 5.86841e-07
- 0 6.36103e-07 0 6.8349e-07 0 7.28554e-07 0 7.70807e-07 0 8.09735e-07 0 8.44814e-07
- 0 8.75525e-07 0 9.01376e-07 0 9.21924e-07 0 9.36792e-07 0 9.45688e-07 0 9.48414e-07
- 0 9.44879e-07 0 9.35096e-07 0 9.19183e-07 0 8.97354e-07 0 8.69903e-07 0 8.37194e-07
- 0 7.9964e-07 0 7.5769e-07 0 7.11808e-07 0 6.6246e-07 0 6.10104e-07 0 5.55173e-07
- 0 4.98073e-07 0 4.39173e-07 0 3.78806e-07 0 3.17268e-07 0 2.54815e-07 0 1.91674e-07
- 0 1.28044e-07 0 6.40984e-08 0 0 0 1.08347e-07 2.16699e-07 3.25047e-07 4.33355e-07 5.41545e-07
- 6.4948e-07 7.56959e-07 8.63696e-07 9.6931e-07 1.07332e-06 1.17514e-06 1.27407e-06 1.36929e-06 1.45991e-06 1.54494e-06 1.62332e-06 1.694e-06
- 1.75592e-06 1.80807e-06 1.84955e-06 1.87958e-06 1.89757e-06 1.90312e-06 1.89603e-06 1.87634e-06 1.8443e-06 1.80035e-06 1.74508e-06 1.67924e-06
- 1.60368e-06 1.51931e-06 1.42708e-06 1.32792e-06 1.22278e-06 1.11251e-06 9.97936e-07 8.79804e-07 7.58776e-07 6.35441e-07 5.10311e-07 3.83833e-07
- 2.56398e-07 1.28348e-07 0 0 1.62511e-07 3.25047e-07 4.87613e-07 6.50171e-07 8.1262e-07 9.74777e-07 1.13635e-06 1.29693e-06
- 1.45595e-06 1.6127e-06 1.76631e-06 1.91571e-06 2.05968e-06 2.19685e-06 2.3257e-06 2.44462e-06 2.55197e-06 2.64611e-06 2.72548e-06 2.78866e-06
- 2.83447e-06 2.86195e-06 2.87051e-06 2.85984e-06 2.83e-06 2.78139e-06 2.71468e-06 2.63084e-06 2.53103e-06 2.41654e-06 2.2888e-06 2.14926e-06
- 1.99937e-06 1.84055e-06 1.67413e-06 1.50134e-06 1.32331e-06 1.14103e-06 9.55391e-07 7.6714e-07 5.7694e-07 3.85357e-07 1.92893e-07 0
- 0 2.16644e-07 4.33355e-07 6.50171e-07 8.67074e-07 1.08396e-06 1.30062e-06 1.5167e-06 1.73167e-06 1.94481e-06 2.15519e-06 2.36164e-06
- 2.56274e-06 2.75685e-06 2.94208e-06 3.11637e-06 3.27749e-06 3.42316e-06 3.5511e-06 3.65911e-06 3.74523e-06 3.80774e-06 3.84536e-06 3.85721e-06
- 3.84289e-06 3.80251e-06 3.73662e-06 3.64621e-06 3.53263e-06 3.3975e-06 3.24267e-06 3.07009e-06 2.88178e-06 2.67974e-06 2.4659e-06 2.24208e-06
- 2.00996e-06 1.77103e-06 1.52663e-06 1.27792e-06 1.0259e-06 7.7141e-07 5.15187e-07 2.57861e-07 0 0 2.70705e-07 5.41545e-07
- 8.1262e-07 1.08396e-06 1.3555e-06 1.62701e-06 1.89811e-06 2.16819e-06 2.43638e-06 2.70155e-06 2.96225e-06 3.21671e-06 3.46284e-06 3.69822e-06
- 3.92018e-06 4.12582e-06 4.31212e-06 4.47606e-06 4.61473e-06 4.72548e-06 4.80604e-06 4.85466e-06 4.87019e-06 4.85213e-06 4.80062e-06 4.71646e-06
- 4.60099e-06 4.45601e-06 4.28372e-06 4.08655e-06 3.8671e-06 3.628e-06 3.37187e-06 3.10119e-06 2.8183e-06 2.52533e-06 2.22418e-06 1.9165e-06
- 1.60373e-06 1.28709e-06 9.67593e-07 6.46103e-07 3.23355e-07 0 0 3.24621e-07 6.4948e-07 9.74777e-07 1.30062e-06 1.62701e-06
- 1.95377e-06 2.28048e-06 2.60651e-06 2.93089e-06 3.25229e-06 3.56902e-06 3.87894e-06 4.1795e-06 4.46773e-06 4.74027e-06 4.99347e-06 5.22347e-06
- 5.42636e-06 5.59837e-06 5.73604e-06 5.83642e-06 5.89721e-06 5.91693e-06 5.89496e-06 5.83154e-06 5.72774e-06 5.58535e-06 5.40677e-06 5.19485e-06
- 4.95273e-06 4.68374e-06 4.39124e-06 4.0785e-06 3.74864e-06 3.40455e-06 3.04883e-06 2.68378e-06 2.3114e-06 1.93337e-06 1.55109e-06 1.16574e-06
- 7.78255e-07 3.89446e-07 0 0 3.78288e-07 7.56959e-07 1.13635e-06 1.5167e-06 1.89811e-06 2.28048e-06 2.66347e-06 3.04641e-06
- 3.42827e-06 3.80761e-06 4.18248e-06 4.55041e-06 4.9084e-06 5.25285e-06 5.57967e-06 5.88432e-06 6.16196e-06 6.40763e-06 6.61649e-06 6.78408e-06
- 6.90658e-06 6.98105e-06 7.0056e-06 6.97946e-06 6.90303e-06 6.77776e-06 6.60603e-06 6.39095e-06 6.13621e-06 5.84579e-06 5.52389e-06 5.17467e-06
- 4.80219e-06 4.41026e-06 4.00235e-06 3.58158e-06 3.15065e-06 2.71188e-06 2.26718e-06 1.81813e-06 1.36597e-06 9.11708e-07 4.5616e-07 0
- 0 4.31561e-07 8.63696e-07 1.29693e-06 1.73167e-06 2.16819e-06 2.60651e-06 3.04641e-06 3.48727e-06 3.92806e-06 4.36726e-06 4.80273e-06
- 5.23171e-06 5.65069e-06 6.05548e-06 6.44115e-06 6.80214e-06 7.13244e-06 7.42579e-06 7.67603e-06 7.87742e-06 8.02504e-06 8.11511e-06 8.14523e-06
- 8.11452e-06 8.02359e-06 7.87442e-06 7.67018e-06 7.4149e-06 7.11327e-06 6.77034e-06 6.39131e-06 5.98131e-06 5.54526e-06 5.08775e-06 4.61291e-06
- 4.12437e-06 3.62527e-06 3.1182e-06 2.60528e-06 2.0882e-06 1.56825e-06 1.04642e-06 5.23469e-07 0 0 4.84248e-07 9.6931e-07
- 1.45595e-06 1.94481e-06 2.43638e-06 2.93089e-06 3.42827e-06 3.92806e-06 4.42931e-06 4.93047e-06 5.42931e-06 5.9228e-06 6.40701e-06 6.87708e-06
- 7.32718e-06 7.75059e-06 8.13988e-06 8.48718e-06 8.78463e-06 9.02483e-06 9.20141e-06 9.3095e-06 9.34608e-06 9.31015e-06 9.20267e-06 9.0264e-06
- 8.78552e-06 8.48529e-06 8.13167e-06 7.73098e-06 7.28963e-06 6.8139e-06 6.30969e-06 5.78245e-06 5.23702e-06 4.67761e-06 4.10773e-06 3.53025e-06
- 2.94745e-06 2.36106e-06 1.77234e-06 1.18221e-06 5.9128e-07 0 0 5.36106e-07 1.07332e-06 1.6127e-06 2.15519e-06 2.70155e-06
- 3.25229e-06 3.80761e-06 4.36726e-06 4.93047e-06 5.4958e-06 6.06102e-06 6.62292e-06 7.17722e-06 7.71842e-06 8.23971e-06 8.73305e-06 9.1893e-06
- 9.59855e-06 9.95073e-06 1.02362e-05 1.04467e-05 1.05759e-05 1.062e-05 1.05778e-05 1.04509e-05 1.02432e-05 9.96037e-06 9.60915e-06 9.19715e-06
- 8.73223e-06 8.22227e-06 7.67483e-06 7.097e-06 6.49517e-06 5.87496e-06 5.24114e-06 4.59762e-06 3.9475e-06 3.29311e-06 2.63616e-06 1.97779e-06
- 1.31875e-06 6.59417e-07 0 0 5.86841e-07 1.17514e-06 1.76631e-06 2.36164e-06 2.96225e-06 3.56902e-06 4.18248e-06 4.80273e-06
- 5.42931e-06 6.06102e-06 6.69576e-06 7.33033e-06 7.96021e-06 8.57933e-06 9.17992e-06 9.75242e-06 1.02856e-05 1.07671e-05 1.11838e-05 1.15231e-05
- 1.1774e-05 1.19282e-05 1.19807e-05 1.19306e-05 1.17804e-05 1.15356e-05 1.12038e-05 1.07939e-05 1.03155e-05 9.77846e-06 9.19225e-06 8.566e-06
- 7.9081e-06 7.22605e-06 6.52629e-06 5.81417e-06 5.09394e-06 4.36884e-06 3.64119e-06 2.91255e-06 2.18385e-06 1.45551e-06 7.27617e-07 0
- 0 6.36103e-07 1.27407e-06 1.91571e-06 2.56274e-06 3.21671e-06 3.87894e-06 4.55041e-06 5.23171e-06 5.9228e-06 6.62292e-06 7.33033e-06
- 8.04205e-06 8.75353e-06 9.45833e-06 1.01478e-05 1.08107e-05 1.14336e-05 1.20006e-05 1.24947e-05 1.28992e-05 1.3199e-05 1.33831e-05 1.34451e-05
- 1.33843e-05 1.32051e-05 1.29152e-05 1.25254e-05 1.20471e-05 1.14926e-05 1.08737e-05 1.02021e-05 9.48858e-06 8.74309e-06 7.97436e-06 7.18971e-06
- 6.39505e-06 5.5949e-06 4.79253e-06 3.9901e-06 3.18889e-06 2.38944e-06 1.59178e-06 7.9551e-07 0 0 6.8349e-07 1.36929e-06
- 2.05968e-06 2.75685e-06 3.46284e-06 4.1795e-06 4.9084e-06 5.65069e-06 6.40701e-06 7.17722e-06 7.96021e-06 8.75353e-06 9.55297e-06 1.03521e-05
- 1.11415e-05 1.19086e-05 1.2637e-05 1.33068e-05 1.38958e-05 1.43808e-05 1.47411e-05 1.49614e-05 1.50335e-05 1.49576e-05 1.47408e-05 1.43952e-05
- 1.39354e-05 1.33766e-05 1.27338e-05 1.20216e-05 1.12536e-05 1.04428e-05 9.60099e-06 8.73821e-06 7.86277e-06 6.9811e-06 6.09782e-06 5.21606e-06
- 4.33762e-06 3.46332e-06 2.59316e-06 1.72659e-06 8.62612e-07 0 0 7.28554e-07 1.45991e-06 2.19685e-06 2.94208e-06 3.69822e-06
- 4.46773e-06 5.25285e-06 6.05548e-06 6.87708e-06 7.71842e-06 8.57933e-06 9.45833e-06 1.03521e-05 1.12546e-05 1.21566e-05 1.30442e-05 1.38982e-05
- 1.46939e-05 1.54013e-05 1.59883e-05 1.64253e-05 1.66899e-05 1.67718e-05 1.66729e-05 1.6406e-05 1.59896e-05 1.54444e-05 1.47899e-05 1.40444e-05
- 1.32249e-05 1.23475e-05 1.14277e-05 1.04794e-05 9.51424e-06 8.54164e-06 7.56835e-06 6.59892e-06 5.636e-06 4.68082e-06 3.73346e-06 2.79321e-06
- 1.85873e-06 9.2832e-07 0 0 7.70807e-07 1.54494e-06 2.3257e-06 3.11637e-06 3.92018e-06 4.74027e-06 5.57967e-06 6.44115e-06
- 7.32718e-06 8.23971e-06 9.17992e-06 1.01478e-05 1.11415e-05 1.21566e-05 1.31847e-05 1.42118e-05 1.52166e-05 1.61685e-05 1.70276e-05 1.7748e-05
- 1.82849e-05 1.86048e-05 1.86934e-05 1.85578e-05 1.82209e-05 1.77126e-05 1.7062e-05 1.62939e-05 1.54289e-05 1.44859e-05 1.34836e-05 1.24407e-05
- 1.13739e-05 1.02971e-05 9.22062e-06 8.15129e-06 7.09312e-06 6.04794e-06 5.01599e-06 3.99636e-06 2.98736e-06 1.98675e-06 9.91906e-07 0
- 0 8.09735e-07 1.62332e-06 2.44462e-06 3.27749e-06 4.12582e-06 4.99347e-06 5.88432e-06 6.80214e-06 7.75059e-06 8.73305e-06 9.75242e-06
- 1.08107e-05 1.19086e-05 1.30442e-05 1.42118e-05 1.53994e-05 1.65853e-05 1.77339e-05 1.87927e-05 1.96941e-05 2.03669e-05 2.07568e-05 2.08435e-05
- 2.06456e-05 2.02066e-05 1.95764e-05 1.87962e-05 1.78945e-05 1.68915e-05 1.58061e-05 1.466e-05 1.34766e-05 1.22774e-05 1.10788e-05 9.89174e-06
- 8.72254e-06 7.57395e-06 6.44637e-06 5.33863e-06 4.24849e-06 3.17305e-06 2.10894e-06 1.05253e-06 0 0 8.44814e-07 1.694e-06
- 2.55197e-06 3.42316e-06 4.31212e-06 5.22347e-06 6.16196e-06 7.13244e-06 8.13988e-06 9.1893e-06 1.02856e-05 1.14336e-05 1.2637e-05 1.38982e-05
- 1.52166e-05 1.65853e-05 1.79869e-05 1.93848e-05 2.07135e-05 2.18728e-05 2.27418e-05 2.32226e-05 2.32852e-05 2.29754e-05 2.23808e-05 2.15865e-05
- 2.06495e-05 1.95962e-05 1.84376e-05 1.71877e-05 1.5873e-05 1.4527e-05 1.31788e-05 1.18477e-05 1.05442e-05 9.2726e-06 8.03338e-06 6.82473e-06
- 5.64351e-06 4.48583e-06 3.34734e-06 2.22341e-06 1.10925e-06 0 0 8.75525e-07 1.75592e-06 2.64611e-06 3.5511e-06 4.47606e-06
- 5.42636e-06 6.40763e-06 7.42579e-06 8.48718e-06 9.59855e-06 1.07671e-05 1.20006e-05 1.33068e-05 1.46939e-05 1.61685e-05 1.77339e-05 1.93848e-05
- 2.10948e-05 2.27962e-05 2.43467e-05 2.55253e-05 2.61291e-05 2.61099e-05 2.55878e-05 2.4746e-05 2.37309e-05 2.26146e-05 2.14049e-05 2.00795e-05
- 1.86359e-05 1.71157e-05 1.55769e-05 1.40607e-05 1.25874e-05 1.11638e-05 9.78978e-06 8.46195e-06 7.17546e-06 5.92473e-06 4.70391e-06 3.50703e-06
- 2.32807e-06 1.16105e-06 0 0 9.01376e-07 1.80807e-06 2.72548e-06 3.65911e-06 4.61473e-06 5.59837e-06 6.61649e-06 7.67603e-06
- 8.78463e-06 9.95073e-06 1.11838e-05 1.24947e-05 1.38958e-05 1.54013e-05 1.70276e-05 1.87927e-05 2.07135e-05 2.27962e-05 2.50003e-05 2.71896e-05
- 2.89366e-05 2.97101e-05 2.94504e-05 2.85059e-05 2.72624e-05 2.59604e-05 2.4663e-05 2.33353e-05 2.18571e-05 2.01641e-05 1.83695e-05 1.65988e-05
- 1.48966e-05 1.3276e-05 1.17332e-05 1.02604e-05 8.84904e-06 7.49035e-06 6.17602e-06 4.89806e-06 3.64879e-06 2.42081e-06 1.2069e-06 0
- 0 9.21924e-07 1.84955e-06 2.78866e-06 3.74523e-06 4.72548e-06 5.73604e-06 6.78408e-06 7.87742e-06 9.02483e-06 1.02362e-05 1.15231e-05
- 1.28992e-05 1.43808e-05 1.59883e-05 1.7748e-05 1.96941e-05 2.18728e-05 2.43467e-05 2.71896e-05 3.02726e-05 3.3652e-05 3.43368e-05 3.35278e-05
- 3.16433e-05 2.97989e-05 2.8165e-05 2.67222e-05 2.53899e-05 2.3978e-05 2.174e-05 1.95913e-05 1.75417e-05 1.56483e-05 1.38859e-05 1.22324e-05
- 1.06698e-05 9.18352e-06 7.76098e-06 6.39103e-06 5.06358e-06 3.76932e-06 2.4995e-06 1.24576e-06 0 0 9.36792e-07 1.87958e-06
- 2.83447e-06 3.80774e-06 4.80604e-06 5.83642e-06 6.90658e-06 8.02504e-06 9.20141e-06 1.04467e-05 1.1774e-05 1.3199e-05 1.47411e-05 1.64253e-05
- 1.82849e-05 2.03669e-05 2.27418e-05 2.55253e-05 2.89366e-05 3.3652e-05 3.78626e-05 3.79597e-05 3.65775e-05 3.35629e-05 3.12428e-05 2.94078e-05
- 2.79191e-05 2.6688e-05 2.56637e-05 2.34389e-05 2.06319e-05 1.83274e-05 1.62705e-05 1.43882e-05 1.26413e-05 1.10033e-05 9.45463e-06 7.97929e-06
- 6.56373e-06 5.19605e-06 3.8655e-06 2.56216e-06 1.27666e-06 0 0 9.45688e-07 1.89757e-06 2.86195e-06 3.84536e-06 4.85466e-06
- 5.89721e-06 6.98105e-06 8.11511e-06 9.3095e-06 1.05759e-05 1.19282e-05 1.33831e-05 1.49614e-05 1.66899e-05 1.86048e-05 2.07568e-05 2.32226e-05
- 2.61291e-05 2.97101e-05 3.43368e-05 3.79597e-05 3.79346e-05 3.65324e-05 3.35072e-05 3.12491e-05 2.94878e-05 2.80692e-05 2.69168e-05 2.60068e-05
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diff --git a/test/boxmodels/1p2c/tissue_tumor_problem.hh b/test/boxmodels/1p2c/tissue_tumor_problem.hh
index f11bec689b..15181c1401 100644
--- a/test/boxmodels/1p2c/tissue_tumor_problem.hh
+++ b/test/boxmodels/1p2c/tissue_tumor_problem.hh
@@ -1,6 +1,7 @@
// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
// vi: set et ts=4 sw=4 sts=4:
/*****************************************************************************
+ * Copyright (C) 2009 by Katherina Baber
* Copyright (C) 2009 by Karin Erbertseder *
* Copyright (C) 2009 by Andreas Lauser *
* Copyright (C) 2008 by Bernd Flemisch *
@@ -23,12 +24,11 @@
*****************************************************************************/
/**
* \file
- * \brief Definition of a problem, where the distribution of a therapeutic agent
- * within pulmonary tissue is described
- * \author Karin Erbertseder, Bernd Flemisch
+ * \brief Definition of a problem, for the 1p2c box problem:
+ * Component transport of nitrogen dissolved in the water phase.
*/
-#ifndef DUMUX_TISSUE_TUMOR_PROBLEM_HH
-#define DUMUX_TISSUE_TUMOR_PROBLEM_HH
+#ifndef DUMUX_1P2C_OUTFLOW_PROBLEM_HH
+#define DUMUX_1P2C_OUTFLOW_PROBLEM_HH
#ifdef HAVE_UG
#include <dune/grid/io/file/dgfparser/dgfug.hh>
@@ -38,21 +38,21 @@
#include <dumux/boxmodels/1p2c/1p2cmodel.hh>
-#include "interstitialfluidtrailfluidsystem.hh"
+#include <dumux/material/fluidsystems/h2on2liquidphasefluidsystem.hh>
#include "tissue_tumor_spatialparameters.hh"
namespace Dumux
{
template <class TypeTag>
-class TissueTumorProblem;
+class OnePTwoCOutflowProblem;
namespace Properties
{
-NEW_TYPE_TAG(TissueTumorProblem, INHERITS_FROM(BoxOnePTwoC));
+NEW_TYPE_TAG(OnePTwoCOutflowProblem, INHERITS_FROM(BoxOnePTwoC));
// Set the grid type
-SET_PROP(TissueTumorProblem, Grid)
+SET_PROP(OnePTwoCOutflowProblem, Grid)
{
#if HAVE_UG
typedef Dune::UGGrid<2> type;
@@ -63,29 +63,29 @@ SET_PROP(TissueTumorProblem, Grid)
};
// Set the problem property
-SET_PROP(TissueTumorProblem, Problem)
+SET_PROP(OnePTwoCOutflowProblem, Problem)
{
- typedef Dumux::TissueTumorProblem<TTAG(TissueTumorProblem)> type;
+ typedef Dumux::OnePTwoCOutflowProblem<TTAG(OnePTwoCOutflowProblem)> type;
};
// Set fluid configuration
-SET_PROP(TissueTumorProblem, FluidSystem)
+SET_PROP(OnePTwoCOutflowProblem, FluidSystem)
{ private:
typedef typename GET_PROP_TYPE(TypeTag, Scalar) Scalar;
public:
- typedef Dumux::FluidSystems::InterstitialFluidTrail<Scalar> type;
+ typedef Dumux::FluidSystems::H2ON2LiquidPhase<Scalar, false> type;
};
// Set the spatial parameters
-SET_TYPE_PROP(TissueTumorProblem,
+SET_TYPE_PROP(OnePTwoCOutflowProblem,
SpatialParameters,
- Dumux::TissueTumorSpatialParameters<TypeTag>);
+ Dumux::OnePTwoCOutflowSpatialParameters<TypeTag>);
//Define whether mole(true) or mass (false) fractions are used
-SET_BOOL_PROP(TissueTumorProblem, UseMoles, true);
+SET_BOOL_PROP(OnePTwoCOutflowProblem, UseMoles, false);
// Disable gravity
-SET_BOOL_PROP(TissueTumorProblem, EnableGravity, false);
+SET_BOOL_PROP(OnePTwoCOutflowProblem, EnableGravity, false);
}
@@ -93,35 +93,28 @@ SET_BOOL_PROP(TissueTumorProblem, EnableGravity, false);
* \ingroup OnePTwoCBoxModel
* \ingroup BoxTestProblems
*
- * \brief Definition of a problem, where the distribution of a therapeutic agent
- * within pulmonary tissue is described
+ * \brief Definition of a problem, for the 1p2c box problem:
+ * Nitrogen is dissolved in the water phase and
+ * is transported with the water flow from the left side to the right.
*
- * The model domain is 22 mm long in x-direction and in y-direction with a discretization length of 0.1
- * mm. The tumour area is located in the middle of the model domain. The diameter of the tumour is
- * assumed to be 2 mm.
+ * The model domain is 1m times 1m with a discretization length of 0.05m
+ * and homogeneous soil properties (\f$ K=10e-10, \Phi=0.4\f$).
+ * Initially the domain is filled with pure water.
*
- * The intercapillary distance is in the range of 0.1 mm. So the distance between the grid nodes is
- * equal to the intercapillary distance. It is assumed that at each node within the model domain the
- * transition of the therapeutic agent from the blood capillary into the tissue can take place.
- * Based on this assumption, the initial conditions are adapted. The mole fraction of the dissolved
- * therapeutic agent x is set to 1.1249 e-8 within the normal pulmonary tissue. Within the tumour the
- * mole fraction of dissolved therapeutic agent is set to zero due to the assumption of a blood vessel
- * free tumour. As initial condition for the pressure p, an interstitial fluid pressure of -1067 Pa is
- * assumed. This value corresponds to the interstitial fluid pressure in healthy pulmonary tissue.
- *
- * All four sides of the model domain are described by Dirichlet boundary conditions. The primary
- * variable p is instantiated with the value -1067 Pa and the primary variable x with the value
- * 1.1249 e-8.
- *
- * The pressure field of the tumour is generated by an additional source term of 1.98 e-9 l/h,
- * that is set in the center of the tumour region.
+ * At the left side, a Dirichlet condition defines a nitrogen mole fraction
+ * of 0.3 mol/mol.
+ * The water phase flows from the left side to the right due to the applied pressure
+ * gradient of 1e5Pa/m. The nitrogen is transported with the water flow
+ * and leaves the domain at the right boundary
+ * where an outflow boundary condition is applied.
+ * This problem uses the \ref OnePTwoCModel.
*
* To run the simulation execute the following line in shell:
- * <tt>./test_1p2c grids/test_1p2c.dgf 1 1</tt>
+ * <tt>./test_1p2c grids/test_1p2c.dgf 100 1</tt>
*/
-template <class TypeTag = TTAG(TissueTumorProblem) >
-class TissueTumorProblem : public OnePTwoCBoxProblem<TypeTag>
+template <class TypeTag = TTAG(OnePTwoCOutflowProblem) >
+class OnePTwoCOutflowProblem : public OnePTwoCBoxProblem<TypeTag>
{
typedef OnePTwoCBoxProblem<TypeTag> ParentType;
@@ -129,6 +122,7 @@ class TissueTumorProblem : public OnePTwoCBoxProblem<TypeTag>
typedef typename GET_PROP_TYPE(TypeTag, Scalar) Scalar;
typedef typename GET_PROP_TYPE(TypeTag, FVElementGeometry) FVElementGeometry;
typedef typename GET_PROP_TYPE(TypeTag, PrimaryVariables) PrimaryVariables;
+ typedef typename GET_PROP_TYPE(TypeTag, FluidSystem) FluidSystem;
typedef typename GET_PROP_TYPE(TypeTag, BoundaryTypes) BoundaryTypes;
typedef typename GET_PROP_TYPE(TypeTag, TimeManager) TimeManager;
@@ -157,22 +151,11 @@ class TissueTumorProblem : public OnePTwoCBoxProblem<TypeTag>
typedef Dune::FieldVector<Scalar, dimWorld> GlobalPosition;
public:
- TissueTumorProblem(TimeManager &timeManager, const GridView &gridView)
+ OnePTwoCOutflowProblem(TimeManager &timeManager, const GridView &gridView)
: ParentType(timeManager, gridView)
{
- // calculate the injection volume
- totalInjectionVolume_ = 0;
- FVElementGeometry fvGeom;
- ElementIterator elemIt = gridView.template begin<0>();
- const ElementIterator endIt = gridView.template end<0>();
- for (; elemIt != endIt; ++ elemIt) {
- fvGeom.update(gridView, *elemIt);
- for (int i = 0; i < fvGeom.numVertices; ++i) {
- const GlobalPosition &pos = fvGeom.subContVol[i].global;
- if (inInjectionVolume_(pos))
- totalInjectionVolume_ += fvGeom.subContVol[i].volume;
- };
- }
+ //initialize fluid system
+ FluidSystem::init();
}
/*!
@@ -186,15 +169,15 @@ public:
* This is used as a prefix for files generated by the simulation.
*/
const char *name() const
- { return "tissue"; }
+ { return "outflow"; }
/*!
* \brief Returns the temperature within the domain.
*
- * This problem assumes a temperature of 36 degrees Celsius.
+ * This problem assumes a temperature of 20 degrees Celsius.
*/
Scalar temperature() const
- { return 273.15 + 36; }; // in [K]
+ { return 273.15 + 20; }; // in [K]
// \}
@@ -209,7 +192,16 @@ public:
*/
void boundaryTypes(BoundaryTypes &values, const Vertex &vertex) const
{
- values.setAllDirichlet();
+ const GlobalPosition globalPos = vertex.geometry().center();
+
+ if(globalPos[0] < eps_ || globalPos[0] > this->bboxMax()[0] - eps_)
+ values.setAllDirichlet();
+ else
+ values.setAllNeumann();
+
+ //outflow condition for the transport equation at right boundary
+ if(globalPos[0] > this->bboxMax()[0] - eps_)
+ values.setOutflow(transEqIdx);
}
/*!
@@ -223,6 +215,9 @@ public:
const GlobalPosition globalPos = vertex.geometry().center();
initial_(values, globalPos);
+ //condition for the trail molefraction at left boundary
+ if(globalPos[0] < eps_)
+ values[x1Idx] = 0.3;
}
/*!
@@ -264,26 +259,6 @@ public:
const GlobalPosition &globalPos) const
{
values = Scalar(0.0);
-
- if (inInjectionVolume_(globalPos)) {
- // total volumetric injection rate in ml/h
- Scalar injRateVol = 0.1;
- // convert to m^3/s
- injRateVol *= 1e-6/3600;
- // total mass injection rate. assume a density of 1030kg/m^3
- Scalar injRateMass = injRateVol*1030.0;
-
- // trail concentration in injected fluid in [mol/ml]
- Scalar trailInjRate = 1e-5;
- // convert to mol/m^3
- trailInjRate *= 1e6;
- // convert to mol/s
- trailInjRate *= injRateVol;
-
- // source term of the total mass
- values[contiEqIdx] = injRateMass / totalInjectionVolume_; // [kg/(s*m^3)]
- values[transEqIdx] = trailInjRate / totalInjectionVolume_; // [mol/(s*m^3)]
- }
}
/*!
@@ -306,25 +281,15 @@ public:
// \}
private:
- bool inInjectionVolume_(const GlobalPosition &globalPos) const
- {
- return
- 10e-3 < globalPos[0] && globalPos[0] < 12e-3 &&
- 10e-3 < globalPos[1] && globalPos[1] < 12e-3;
- };
-
-
// the internal method for the initial condition
void initial_(PrimaryVariables &values,
const GlobalPosition &globalPos) const
{
- values[pressureIdx] = 0.0; //initial condition for the pressure
+ values[pressureIdx] = 2e5 - 1e5*globalPos[0];//0.0; //initial condition for the pressure
values[x1Idx] = 0.0; //initial condition for the trail molefraction
-// if(globalPos[0] > 0.4 && globalPos[0] < 0.6 && globalPos[1] > 0.4 && globalPos[1] < 0.6)
-// values[x1Idx] = 0.6;
}
- Scalar totalInjectionVolume_;
+ static const Scalar eps_ = 1e-4;
}; //end namespace
}
#endif
diff --git a/test/boxmodels/1p2c/tissue_tumor_spatialparameters.hh b/test/boxmodels/1p2c/tissue_tumor_spatialparameters.hh
index f6862eb736..abe019d97f 100644
--- a/test/boxmodels/1p2c/tissue_tumor_spatialparameters.hh
+++ b/test/boxmodels/1p2c/tissue_tumor_spatialparameters.hh
@@ -24,10 +24,10 @@
* \file
*
* \brief Definition of the spatial parameters for the 1p2c
- * tissue-tumor problem
+ * outlfow problem.
*/
-#ifndef DUMUX_TISSUE_TUMOR_SPATIAL_PARAMETERS_HH
-#define DUMUX_TISSUE_TUMOR_SPATIAL_PARAMETERS_HH
+#ifndef DUMUX_1P2C_OUTFLOW_SPATIAL_PARAMETERS_HH
+#define DUMUX_1P2C_OUTFLOW_SPATIAL_PARAMETERS_HH
#include <dumux/material/spatialparameters/boxspatialparameters1p.hh>
#include <dumux/material/fluidmatrixinteractions/2p/linearmaterial.hh>
@@ -42,10 +42,10 @@ namespace Dumux
* \ingroup BoxTestProblems
*
* \brief Definition of the spatial parameters for the 1p2c
- * tissue-tumor problem
+ * outflow problem.
*/
template<class TypeTag>
-class TissueTumorSpatialParameters : public BoxSpatialParametersOneP<TypeTag>
+class OnePTwoCOutflowSpatialParameters : public BoxSpatialParametersOneP<TypeTag>
{
typedef BoxSpatialParametersOneP<TypeTag> ParentType;
typedef typename GET_PROP_TYPE(TypeTag, Grid) Grid;
@@ -68,18 +68,15 @@ class TissueTumorSpatialParameters : public BoxSpatialParametersOneP<TypeTag>
//typedef LinearMaterial<Scalar> EffMaterialLaw;
public:
- TissueTumorSpatialParameters(const GridView &gv)
+ OnePTwoCOutflowSpatialParameters(const GridView &gv)
: ParentType(gv)
{
- permTumor_ = 2.142e-11;
- permTissue_ = 4.424e-12;
- porosityTumor_ = 0.31;
- porosityTissue_ = 0.13;
- tortuosityTumor_ = 0.706;
- tortuosityTissue_ = 0.280;
+ permeability_ = 1e-10;
+ porosity_ = 0.4;
+ tortuosity_ = 0.28;
}
- ~TissueTumorSpatialParameters()
+ ~OnePTwoCOutflowSpatialParameters()
{}
@@ -104,11 +101,7 @@ public:
const FVElementGeometry &fvElemGeom,
int scvIdx) const
{
- const GlobalPosition &pos = fvElemGeom.subContVol[scvIdx].global;
- if (isTumor_(pos))
- return permTumor_;
- else
- return permTissue_;
+ return permeability_;
}
/*!
@@ -122,11 +115,7 @@ public:
const FVElementGeometry &fvElemGeom,
int scvIdx) const
{
- const GlobalPosition &pos = fvElemGeom.subContVol[scvIdx].global;
- if (isTumor_(pos))
- return porosityTumor_;
- else
- return porosityTissue_;
+ return porosity_;
}
/*!
@@ -140,11 +129,7 @@ public:
const FVElementGeometry &fvElemGeom,
int scvIdx) const
{
- const GlobalPosition &pos = fvElemGeom.subContVol[scvIdx].global;
- if (isTumor_(pos))
- return tortuosityTumor_;
- else
- return tortuosityTissue_;
+ return tortuosity_;
}
/*!
@@ -165,31 +150,13 @@ public:
int vertexI,
int vertexJ) const
{
- bool inTumor = isTumor_(elem.geometry().corner(0));
- int n = elem.template count<dim>();
- for (int i = 1; i < n; ++i) {
- if ((inTumor && !isTumor_(elem.geometry().corner(i))) ||
- (!inTumor && isTumor_(elem.geometry().corner(i))))
- return true;
- }
return false;
}
private:
- bool isTumor_(const Dune::FieldVector<CoordScalar,dim>& globalPos) const
- {
- if(10e-3 < globalPos[0] && globalPos[0] < 15e-3 &&
- 10e-3 < globalPos[1] && globalPos[1] < 15e-3)
- return true;
- return false;
- }
-
- Scalar permTumor_;
- Scalar permTissue_;
- Scalar porosityTumor_;
- Scalar porosityTissue_;
- Scalar tortuosityTumor_;
- Scalar tortuosityTissue_;
+ Scalar permeability_;
+ Scalar porosity_;
+ Scalar tortuosity_;
};
}
--
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