[3p3c] Removed permeability function in volumevariables and moved perm-output to problem file - so that the model gives no error when choosing anisotropic/tensor-valued permeabilities.

This changed order of output fields, so reference vtus where adjusted too

(Reviewed by bernd)



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- Deprecated the 3p3cni model
- Added effective thermal conductivity calculation in fluidmatrixinteractions for 3p
- Added thermal conductivity functions to the 3p fluidsystem h2oairmesitylen.hh and h2oairxylene.hh
- Upddated the 3p3cni test for the generic non-isothermal model
- Changed the reference vtus for the two tests, since results are slightly different due to different thermal conductivities


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(reviewed by bernd)


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(reviewed by natalies)


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length = 150, thanks to kristopherg

reviewed by fetzer


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nonetheless  it's namespaces should be properly commented :-)

reviewed by Christoph


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modules file, removed some trailing whitespaces



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variables. 
Reviewed by Christoph.


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Only public member names have been treated so far. Local variables
will be done shortly, classes maybe not before the next release cycle.
Everything old could be marked deprecated.

Reviewed by Benjamin and Christoph. 


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saturation. In particular, it deals with the capitalized "C" in the
capillary-pressure-saturation relationships:
entryPC -> entryPc
maxPC -> maxPc
pC -> pc
pCAlpha -> pcalpha
pCGW -> pcgw
pCNW -> pcnw
pCGN -> pcgn
pCHighSw -> pcHighSw
pCLowSw -> pcLowSw
setEntryPC -> setEntryPc
setMaxPC -> setMaxPc

Reviewed by Christoph.


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fully-implicit models." In particular, it replaces 
OnePBoxModel -> OnePModel
OnePTwoCBoxModel -> OnePTwoCModel
boxGravity -> gravityAtPos
boxSDNeumann -> solDependentNeumann
boxSDSource -> solDependentSource
boxTemperature -> temperatureAtPos



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(reviewed by bernd)


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implicit branch: add attachDofData method to the VTKMultiWriter to uniformly treat vertex and cell data. Simplify addOutputVtkFields methods of the models correspondingly. Get the global indices from the dofMapper instead of vertexMapper or elementMapper whereever possible, avoiding corresponding if-statements.

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implicit branch: unify Box- and CC-Model to ImplicitModel. Delete ccmodel.hh. Deprecate BoxModel in favor of ImplicitModel. Adapt includes and names.

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implicit branch: deprecate BoxVolumeVariables in favor of ImplicitVolumeVariables. Adapt includes and names.

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implicit branch: change directory structure. Add dumux/implicit directory. Copy models from boxmodels/model to implicit/model. Copy boxmodels/common to implicit/box. Copy ccmodels/common (from devel) to implicit/cellcentered. Copy boxmodels/common/box*.hh to implicit/common/implicit*.hh. Move test/boxmodels to test/implicit. Adapt configure.ac and Makefile.ams. Everything still builds.

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volumevariables


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Use copydoc for BoxVolumeVariables::update.


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been renamed to Indices for all box models. This implements FS 128, at
least for the box models. The old names have been kept for
compatibility. They cannot be marked deprecated, only a // DEPRECATED comment has been
made at the appropriate places.


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                  again. professorial directive


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- remove stray AC_MSG_RESULT from DUMUX_CHECK_QUAD
- slight reformulations of the usage message of test_2p
- replace tabulators with four spaces
- remove trailing whitespaceformating

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- new institute name
- add missing modelines
- reformat the entry for leopold stadler in air.hh

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