Note: It is not clear to me we use atOnceAccu and not
successiveAccu. Anyway as long as we use less than 100 processes
this should not bite us too much.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13269 2fb0f335-1f38-0410-981e-8018bf24f1b0

Previously this was done in every apply call. Unfortunately, the
initial condition for the algorithm was only satisfied in the first call.
This patch make sure that initGhostsAndOwners is only called during the
first apply method.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13266 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13253 2fb0f335-1f38-0410-981e-8018bf24f1b0

This patch fixes various bugs in the non-pdelab implementation:
1. The index sets are now correctly setup.
2. For the box model it is made sure that the right hand side is
consistent.

Now the test_box1pwithamg converges in the same number of steps of
the non-linear solve in parallel as in serial. (Not the case with
pdelab!)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13252 2fb0f335-1f38-0410-981e-8018bf24f1b0

Patch provided by Bernd Flemisch.

Implements the datahandles completely and correctly and adds
missing call to initGhostsAndOwners for the nonoverlapping case.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13251 2fb0f335-1f38-0410-981e-8018bf24f1b0

We use the normal initializers of the class constructor for this now.

NOTE: The member will be uninitialized if the default constructor is called!


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13250 2fb0f335-1f38-0410-981e-8018bf24f1b0

The compiler error was:
/home/mblatt/src/dune/release/dumux/dumux/decoupled/2p/diffusion/fvmpfa/lmethod/fvmpfal3dinteractionvolumecontaineradaptive.hh:96:5: error: a class-key must be used when declaring a friend
/home/mblatt/src/dune/release/dumux/dumux/decoupled/2p/diffusion/fvmpfa/lmethod/fvmpfal3dinteractionvolumecontaineradaptive.hh:96:5: error: friend declaration does not name a class or function
make[4]: *** [test_adaptive2p2c2d.o] Fehler 1

Seems like g++-4.6 is having problems with typedefs in a friend
declaration. We now us the original class type for this.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13249 2fb0f335-1f38-0410-981e-8018bf24f1b0

The correct usage of wildcards is "$(wildcard *.hh)".
With this patch we use these instead of "*.hh".

Quoting from https://www.gnu.org/software/make/manual/html_node/Wildcard-Examples.html#Wildcard-Examples

Wildcard expansion does not happen when you define a variable. Thus, if you write this:

     objects = *.o

then the value of the variable objects is the actual string ‘*.o’. However, if you use the value of objects in a target or prerequisite, wildcard expansion will take place there. If you use the value of objects in a recipe, the shell may perform wildcard expansion when the recipe runs. To set objects to the expansion, instead use:

     objects := $(wildcard *.o)



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13248 2fb0f335-1f38-0410-981e-8018bf24f1b0

We need to include $(top_srcdir) in AM_CPPFLAGS for this to work.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13246 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13242 2fb0f335-1f38-0410-981e-8018bf24f1b0

writer: call that function in order to write it to result file
reference: identical except one additional variable present


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13234 2fb0f335-1f38-0410-981e-8018bf24f1b0

in output


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13223 2fb0f335-1f38-0410-981e-8018bf24f1b0

void space. 

reviewed by Bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13220 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13204 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Bernd.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13199 2fb0f335-1f38-0410-981e-8018bf24f1b0

For the box porous media spatial parameters, we allow 
- both cell-wise and vertex-wise defined permeabilities,
- both scalar and tensorial permeabilities.

The reverted commits assumed vertex-wise scalar permeabilities 
and are not general enough. The currently correct way to give 
the permeabilities to the VTK output is to overwrite the method 
addOutputVtkFields in the problem at hand. There, it should be 
clear what type of permeabilities are used. See 
test/implicit/co2/heterogeneousproblem.hh
for details. Admittedly, this is not a very nice way, a better, but
general solution would be great.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13197 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13193 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13192 2fb0f335-1f38-0410-981e-8018bf24f1b0

included the energy fluxes transported by the diffusive component fluxes
times the enthalpy of the components
applies only for the free flow region

reviewed by Bernd and Vishal


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13165 2fb0f335-1f38-0410-981e-8018bf24f1b0

Added new property in basicproperties.hh called VTKMultiWriter, which can be used to change the type of output files either ascii (default) or appendedraw (binary format which saves space). For the implicit problems the VTKMultiWriter type is set in implicitproblem.hh by calling the property.
Reviewed by Bernd.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13109 2fb0f335-1f38-0410-981e-8018bf24f1b0

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Reviewed by Philipp.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13095 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Christoph.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13089 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Christoph.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13088 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13071 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13070 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13069 2fb0f335-1f38-0410-981e-8018bf24f1b0

It is 10% faster in the test.
We have to investigate to use UMFPack more.
(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13068 2fb0f335-1f38-0410-981e-8018bf24f1b0

Be aware that doxygen might timeout with older versions
of dune-common.
(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13066 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13048 2fb0f335-1f38-0410-981e-8018bf24f1b0

Steffen moved the multidomain(grid) repositories.
Since UG 3.10.0 flex and yacc are no longer needed.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13047 2fb0f335-1f38-0410-981e-8018bf24f1b0

In general there is now method gridView at the model.
Patch provided by Bernd.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13042 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13041 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13040 2fb0f335-1f38-0410-981e-8018bf24f1b0

In general the gridView is only available from the problem directly. Therefore
this patch does problem.model().gridView()->problem.gridView() to fix
this.

In addition the model might be null during the constructor, which
might be called somewhere in NewtonConroller. It seems like the model
is initialized at a later stage. Therefore we now use a new method
initGhostsAndOwners to populate the arrays needed for the projections
in the parallel solvers. Using a boolean flag we make sure that this
is done only once.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13039 2fb0f335-1f38-0410-981e-8018bf24f1b0

This is needed for AMG that needs to know where the unknowns are
attached. This patch was actually provided by Bernd.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13038 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13010 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13009 2fb0f335-1f38-0410-981e-8018bf24f1b0

Update core modules to 2.3.
PDELab to 1.1
MultidomainGrid 2.3 release branch.
Stick with hand-picked version of Multidomain.

Many thanks to Steffen for updating Multidomani and fixing my bug.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13008 2fb0f335-1f38-0410-981e-8018bf24f1b0