dumux issueshttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues2019-05-28T08:54:20Zhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/7092p2c water-air and fuelcell/remediation tests fail due to !16152019-05-28T08:54:20ZSimon Emmert2p2c water-air and fuelcell/remediation tests fail due to !1615The following tests fail on buildbot due to the changes in the viscosity calculation from !1615
dumux (some have a singular matrix and do not converge at all)
```
119 - test_2p2cni_waterair_box (Failed)
120 - test_2p2cni_waterair_buoyan...The following tests fail on buildbot due to the changes in the viscosity calculation from !1615
dumux (some have a singular matrix and do not converge at all)
```
119 - test_2p2cni_waterair_box (Failed)
120 - test_2p2cni_waterair_buoyancy_box (Failed)
121 - test_2p2cni_waterair_tpfa (Failed)
```
dumux-lecture (here only the reference solution does not match anymore)
```
11 - fuelcell (Failed)
22 - remediationscenariosexercise (Failed)
```https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/640A few tests fail without a direct solver present2018-12-20T16:10:15ZTimo Kochtimokoch@math.uio.noA few tests fail without a direct solver presentCould be the case that AMG uses a different smoother in that case. Can probably be made more stable by decreasing Newton tolerance. See buildbot's minimal build setups.Could be the case that AMG uses a different smoother in that case. Can probably be made more stable by decreasing Newton tolerance. See buildbot's minimal build setups.https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/685Appl lens2pexercise3 in dumux-lecture fails after commit updating the timeloop2019-04-06T11:01:54ZTimo Kochtimokoch@math.uio.noAppl lens2pexercise3 in dumux-lecture fails after commit updating the timeloopPossible bug in the timeloop for large time step sizes? Fails since 2fbb615bc761c7c3fa860ced5901204eb15b5975Possible bug in the timeloop for large time step sizes? Fails since 2fbb615bc761c7c3fa860ced5901204eb15b59753.1https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/629Box dfm tests fail with dune master2018-12-04T14:05:56ZTimo Kochtimokoch@math.uio.noBox dfm tests fail with dune mastersee BuildBotsee BuildBot3.0Dennis GläserDennis Gläserhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/561BrineCO2 phaseIdx assertion in test_fluidsystems2018-08-30T07:15:33ZSimon EmmertBrineCO2 phaseIdx assertion in test_fluidsystemsOur fluidsystems-test fails (line 159), because the assertion of ``assert(restrictPhaseIdx_ < 0 || restrictPhaseIdx_ == phaseIdx);`` fails for the pressure.
I guess this has to do with the brine-adapter, but could not fix it or it did n...Our fluidsystems-test fails (line 159), because the assertion of ``assert(restrictPhaseIdx_ < 0 || restrictPhaseIdx_ == phaseIdx);`` fails for the pressure.
I guess this has to do with the brine-adapter, but could not fix it or it did not make perfect sense to me right away. Does someone have an idea? If not this should be perfect for the dumux day.3.0https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1061Disable or fix Python tests in CI for release 3.42021-07-28T10:03:33ZTimo Kochtimokoch@math.uio.noDisable or fix Python tests in CI for release 3.4The new Docker images enable the Python bindings in the full container (previously untested). The Python bindings are tested if Dune >= 2.8.
However due to a configuration issue the tests currently fail to run/compile. Help is on the way...The new Docker images enable the Python bindings in the full container (previously untested). The Python bindings are tested if Dune >= 2.8.
However due to a configuration issue the tests currently fail to run/compile. Help is on the way in !2681 but this is not going to be part of 3.4. Therefore we should probably just manually disable the Python tests in the CI config on master+release/3.4. Or if the problem is solved in !2681 soon, add the fix to the current CI config.3.4https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1148Failed test_co2_tpfa/test_co2_tpfani2022-05-03T17:07:06ZTimo Kochtimokoch@math.uio.noFailed test_co2_tpfa/test_co2_tpfanirtest_co2_tpfa: /dune/modules/dune-alugrid/dune/alugrid/3d/entityseed.hh:78: static bool Dune::ALU3dGridEntitySeedBase<0, const Dune::ALU3dGrid<2, 2, Dune::hexa, Dune::ALUGridMPIComm> >::Bnd<0, ALUGrid::Gitter::hasFace>::isGhost(Dune::AL...rtest_co2_tpfa: /dune/modules/dune-alugrid/dune/alugrid/3d/entityseed.hh:78: static bool Dune::ALU3dGridEntitySeedBase<0, const Dune::ALU3dGrid<2, 2, Dune::hexa, Dune::ALUGridMPIComm> >::Bnd<0, ALUGrid::Gitter::hasFace>::isGhost(Dune::ALU3dGridEntitySeedBase::KeyType *) [codim = 0, GridImp = const Dune::ALU3dGrid<2, 2, Dune::hexa, Dune::ALUGridMPIComm>, cd = 0, Key = ALUGrid::Gitter::hasFace]: Assertion `key' failed.
with dune master + clang.3.5Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/695Failing non-equil tests after merging !14962019-05-04T13:49:31ZTimo Kochtimokoch@math.uio.noFailing non-equil tests after merging !1496After merging !1496 `test_1p2c_nonequilibrium_tpfa` `test_mpnc_kinetic_box` fail now on buildbot.
In the case of `test_1p2c_nonequilibrium_tpfa` an fv geometry cache is accessed which is not in the stencil.
```
Test command: /data/src/...After merging !1496 `test_1p2c_nonequilibrium_tpfa` `test_mpnc_kinetic_box` fail now on buildbot.
In the case of `test_1p2c_nonequilibrium_tpfa` an fv geometry cache is accessed which is not in the stencil.
```
Test command: /data/src/dumux/bin/testing/runtest.py "--script" "fuzzy" "--files" "/data/src/dumux/test/references/test_1p2c_nonequilibrium_tpfa-reference.vtu" "/data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa-00044.vtu" "--command" "/data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa params.input -Problem.Name test_1p2c_nonequilibrium_tpfa" "--zeroThreshold" "{"velocity_liq (m/s)_1":1e-15}"
Test timeout computed to be: 300
You idiot! You signed the order to destroy Earth!
- Douglas Adams, HGttG
Reading parameters from file params.input.
The H2O-N2 fluid system was configured with the following policy:
- use H2O density as liquid mixture density: true
- use ideal gas density: true
- use N2 viscosity as gas mixture viscosity: true
- use N2 heat conductivity as gas mixture heat conductivity: true
- use ideal gas heat capacities: true
-------------------------------------------------------------------------
Initializing tables for the H2O fluid properties (20000 entries).
Temperature -> min: 2.731e+02, max: 6.231e+02, n: 100
Pressure -> min: 0.000e+00, max: 2.000e+07, n: 200
-------------------------------------------------------------------------
problem uses mole fractions
Writing output for problem "test_1p2c_nonequilibrium_tpfa". Took 8.889e-01 seconds.
Assemble: r(x^k) = dS/dt + div F - q; M = grad rtest_1p2c_nonequilibrium_tpfa: /data/src/dumux/dumux/discretization/cellcentered/tpfa/fvelementgeometry.hh:536: const LocalIndexType Dumux::CCTpfaFVElementGeometry::findLocalIndex(Dumux::CCTpfaFVElementGeometry::GridIndexType, const std::vector::GridIndex>&) const [with GG = Dumux::CCTpfaFVGridGeometry > >, false, Dumux::CCTpfaDefaultGridGeometryTraits > >, Dumux::DefaultMapperTraits > >, Dune::MultipleCodimMultipleGeomTypeMapper > >, Dune::Impl::MCMGFailLayout>, Dune::MultipleCodimMultipleGeomTypeMapper > >, Dune::Impl::MCMGFailLayout> > > >; Dumux::CCTpfaFVElementGeometry::LocalIndexType = unsigned int; Dumux::CCTpfaFVElementGeometry::GridIndexType = unsigned int; typename Dumux::IndexTraits::GridIndex = unsigned int]: Assertion `it != indices.end() && "Could not find the scv/scvf! Make sure to properly bind this class!"' failed.
[behandla:19637] *** Process received signal ***
[behandla:19637] Signal: Aborted (6)
[behandla:19637] Signal code: (-6)
[behandla:19637] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x12890)[0x7f3fc9448890]
[behandla:19637] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xc7)[0x7f3fc9083e97]
[behandla:19637] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x141)[0x7f3fc9085801]
[behandla:19637] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x3039a)[0x7f3fc907539a]
[behandla:19637] [ 4] /lib/x86_64-linux-gnu/libc.so.6(+0x30412)[0x7f3fc9075412]
[behandla:19637] [ 5] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(+0xd0faf)[0x55c4b4287faf]
[behandla:19637] [ 6] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZNK5Dumux41NonEquilibriumLocalResidualImplementationINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaELb0EE11computeFluxERKNS_36OnePTwoCThermalNonequilibriumProblemIS3_EERKN4Dune6EntityILi0ELi2EKNS9_8YaspGridILi2ENS9_22EquidistantCoordinatesIdLi2EEEEENS9_10YaspEntityEEERKNS_23CCTpfaFVElementGeometryINS_20CCTpfaFVGridGeometryINS9_8GridViewINS9_25DefaultLeafGridViewTraitsISF_EEEELb0ENS_31CCTpfaDefaultGridGeometryTraitsISP_NS_19DefaultMapperTraitsISP_NS9_35MultipleCodimMultipleGeomTypeMapperISP_NS9_4Impl14MCMGFailLayoutEEESV_EEEEEELb0EEERKNS_28CCTpfaElementVolumeVariablesINS_21CCGridVolumeVariablesINS_38CCTpfaDefaultGridVolumeVariablesTraitsIS6_NS_43NonEquilibriumVolumeVariablesImplementationINS_27OnePNCVolumeVariablesTraitsINS9_11FieldVectorIdLi4EEENS_12FluidSystems11OnePAdapterINS19_5H2ON2IdNS19_18H2ON2DefaultPolicyILb1EEEEELi0EEENS_24NonEquilibriumFluidStateIdS1F_EENS_12SolidSystems15InertSolidPhaseIdNS_10Components8ConstantILi1EdEEEENS_15InertSolidStateIdS1N_EEdNS_25NonEquilibriumModelTraitsINS_30OnePNCUnconstrainedModelTraitsINS_17OnePNCModelTraitsILi2ELb1ELi2EEEEELb0ELb1ELi1ELi1ELNS_18NusseltFormulationE1ELNS_19SherwoodFormulationE0EEEEENS_21OnePNCVolumeVariablesIS1Y_EELb0ELb1ELi1EEEEELb0EEELb0EEERKNS_26CCTpfaSubControlVolumeFaceISP_NS_31CCTpfaDefaultScvfGeometryTraitsISP_EEEERKNS_31CCTpfaElementFluxVariablesCacheINS_28CCTpfaGridFluxVariablesCacheIS6_NS_44PorousMediumFluxVariablesCacheImplementationIS3_LNS_20DiscretizationMethodE2EEENS_50PorousMediumFluxVariablesCacheFillerImplementationIS3_LS2G_2EEELb0ENS_26CCTpfaDefaultGridFVCTraitsIS6_S2H_S2J_EEEELb0EEE+0x1713)[0x55c4b431b873]
[behandla:19637] [ 7] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZNK5Dumux15CCLocalResidualINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaEE8evalFluxERKNS_36OnePTwoCThermalNonequilibriumProblemIS3_EERKN4Dune6EntityILi0ELi2EKNS9_8YaspGridILi2ENS9_22EquidistantCoordinatesIdLi2EEEEENS9_10YaspEntityEEERKNS_23CCTpfaFVElementGeometryINS_20CCTpfaFVGridGeometryINS9_8GridViewINS9_25DefaultLeafGridViewTraitsISF_EEEELb0ENS_31CCTpfaDefaultGridGeometryTraitsISP_NS_19DefaultMapperTraitsISP_NS9_35MultipleCodimMultipleGeomTypeMapperISP_NS9_4Impl14MCMGFailLayoutEEESV_EEEEEELb0EEERKNS_28CCTpfaElementVolumeVariablesINS_21CCGridVolumeVariablesINS_38CCTpfaDefaultGridVolumeVariablesTraitsIS6_NS_43NonEquilibriumVolumeVariablesImplementationINS_27OnePNCVolumeVariablesTraitsINS9_11FieldVectorIdLi4EEENS_12FluidSystems11OnePAdapterINS19_5H2ON2IdNS19_18H2ON2DefaultPolicyILb1EEEEELi0EEENS_24NonEquilibriumFluidStateIdS1F_EENS_12SolidSystems15InertSolidPhaseIdNS_10Components8ConstantILi1EdEEEENS_15InertSolidStateIdS1N_EEdNS_25NonEquilibriumModelTraitsINS_30OnePNCUnconstrainedModelTraitsINS_17OnePNCModelTraitsILi2ELb1ELi2EEEEELb0ELb1ELi1ELi1ELNS_18NusseltFormulationE1ELNS_19SherwoodFormulationE0EEEEENS_21OnePNCVolumeVariablesIS1Y_EELb0ELb1ELi1EEEEELb0EEELb0EEERKNS_31CCTpfaElementFluxVariablesCacheINS_28CCTpfaGridFluxVariablesCacheIS6_NS_44PorousMediumFluxVariablesCacheImplementationIS3_LNS_20DiscretizationMethodE2EEENS_50PorousMediumFluxVariablesCacheFillerImplementationIS3_LS2A_2EEELb0ENS_26CCTpfaDefaultGridFVCTraitsIS6_S2B_S2D_EEEELb0EEERKNS_26CCTpfaSubControlVolumeFaceISP_NS_31CCTpfaDefaultScvfGeometryTraitsISP_EEEE+0x2e3)[0x55c4b431bf03]
[behandla:19637] [ 8] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZNK5Dumux15FVLocalResidualINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaEE17evalFluxAndSourceERKN4Dune6EntityILi0ELi2EKNS5_8YaspGridILi2ENS5_22EquidistantCoordinatesIdLi2EEEEENS5_10YaspEntityEEERKNS_23CCTpfaFVElementGeometryINS_20CCTpfaFVGridGeometryINS5_8GridViewINS5_25DefaultLeafGridViewTraitsISB_EEEELb0ENS_31CCTpfaDefaultGridGeometryTraitsISL_NS_19DefaultMapperTraitsISL_NS5_35MultipleCodimMultipleGeomTypeMapperISL_NS5_4Impl14MCMGFailLayoutEEESR_EEEEEELb0EEERKNS_28CCTpfaElementVolumeVariablesINS_21CCGridVolumeVariablesINS_38CCTpfaDefaultGridVolumeVariablesTraitsINS_36OnePTwoCThermalNonequilibriumProblemIS3_EENS_43NonEquilibriumVolumeVariablesImplementationINS_27OnePNCVolumeVariablesTraitsINS5_11FieldVectorIdLi4EEENS_12FluidSystems11OnePAdapterINS17_5H2ON2IdNS17_18H2ON2DefaultPolicyILb1EEEEELi0EEENS_24NonEquilibriumFluidStateIdS1D_EENS_12SolidSystems15InertSolidPhaseIdNS_10Components8ConstantILi1EdEEEENS_15InertSolidStateIdS1L_EEdNS_25NonEquilibriumModelTraitsINS_30OnePNCUnconstrainedModelTraitsINS_17OnePNCModelTraitsILi2ELb1ELi2EEEEELb0ELb1ELi1ELi1ELNS_18NusseltFormulationE1ELNS_19SherwoodFormulationE0EEEEENS_21OnePNCVolumeVariablesIS1W_EELb0ELb1ELi1EEEEELb0EEELb0EEERKNS_31CCTpfaElementFluxVariablesCacheINS_28CCTpfaGridFluxVariablesCacheIS12_NS_44PorousMediumFluxVariablesCacheImplementationIS3_LNS_20DiscretizationMethodE2EEENS_50PorousMediumFluxVariablesCacheFillerImplementationIS3_LS28_2EEELb0ENS_26CCTpfaDefaultGridFVCTraitsIS12_S29_S2B_EEEELb0EEERKNS_22CCElementBoundaryTypesE+0x341)[0x55c4b431c3e1]
[behandla:19637] [ 9] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZNK5Dumux20FVLocalAssemblerBaseINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaENS_11FVAssemblerIS3_LNS_10DiffMethodE0ELb1EEENS_16CCLocalAssemblerIS3_S6_LS5_0ELb1EEELb1EE17evalLocalResidualEv+0xd6)[0x55c4b431ccb6]
[behandla:19637] [10] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZN5Dumux16CCLocalAssemblerINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaENS_11FVAssemblerIS3_LNS_10DiffMethodE0ELb1EEELS5_0ELb1EE31assembleJacobianAndResidualImplERN4Dune10BCRSMatrixINS8_11FieldMatrixIdLi4ELi4EEESaISB_EEERNS_27NonEquilibriumGridVariablesIS3_EE+0x74d)[0x55c4b433ef4d]
[behandla:19637] [11] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZNK5Dumux11FVAssemblerINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaELNS_10DiffMethodE0ELb1EE9assemble_IZNS5_27assembleJacobianAndResidualINS_18PartialReassemblerIS5_EEEEvRKN4Dune11BlockVectorINSA_11FieldVectorIdLi4EEESaISD_EEEPKT_EUlRKNSA_6EntityILi0ELi2EKNSA_8YaspGridILi2ENSA_22EquidistantCoordinatesIdLi2EEEEENSA_10YaspEntityEEEE_EEvOSI_+0x132)[0x55c4b4340b52]
[behandla:19637] [12] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(main+0xeb3)[0x55c4b4282c53]
[behandla:19637] [13] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f3fc9066b97]
[behandla:19637] [14] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_start+0x2a)[0x55c4b4286a2a]
[behandla:19637] *** End of error message ***
63/186 Test #63: test_1p2c_nonequilibrium_tpfa .....................***Failed 1.82 sec
```
```
Test command: /data/src/dumux/bin/testing/runtest.py "--script" "fuzzy" "--files" "/data/src/dumux/test/references/test_mpnc_kinetic_box-reference.vtu" "/data/build/dumux/test/porousmediumflow/mpnc/implicit/kinetic/test_mpnc_kinetic_box-00011.vtu" "--command" "/data/build/dumux/test/porousmediumflow/mpnc/implicit/kinetic/test_mpnc_kinetic_box params.input -Problem.Name test_mpnc_kinetic_box"
Test timeout computed to be: 300
Chuck Norris has successfully compiled DuMuX.
Reading parameters from file params.input.
The H2O-N2 fluid system was configured with the following policy:
- use H2O density as liquid mixture density: true
- use ideal gas density: true
- use N2 viscosity as gas mixture viscosity: true
- use N2 heat conductivity as gas mixture heat conductivity: true
- use ideal gas heat capacities: true
-------------------------------------------------------------------------
Initializing tables for the H2O fluid properties (10000 entries).
Temperature -> min: 2.780e+02, max: 4.531e+02, n: 100
Pressure -> min: 7.500e+04, max: 2.250e+05, n: 100
-------------------------------------------------------------------------
Writing output for problem "test_mpnc_kinetic_box". Took 6.039e-01 seconds.
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.278e+00(4.768e+01%)/1.402e+00(5.231e+01%)/3.405e-04(1.270e-02%)
Writing output for problem "test_mpnc_kinetic_box". Took 4.812e-02 seconds.
[ 1%] Time step 1 done in 2.736643 seconds. Wall clock time: 2.785, time: 0.05000, time step size: 0.05000000
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 0.95099143(48.46939834%)/1.01091940(51.52376100%)/0.00013422(0.00684067%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04853347 seconds.
[ 1%] Time step 2 done in 2.051791 seconds. Wall clock time: 4.837, time: 0.12500, time step size: 0.07500000
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 0.94914820(48.59345643%)/1.00394319(51.39879041%)/0.00015144(0.00775316%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04807224 seconds.
[ 2%] Time step 3 done in 2.043512 seconds. Wall clock time: 6.880, time: 0.24375, time step size: 0.11875000
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 0.95115055(48.39749146%)/1.01398697(51.59480356%)/0.00015143(0.00770497%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04845110 seconds.
[ 4%] Time step 4 done in 2.055532 seconds. Wall clock time: 8.936, time: 0.43177, time step size: 0.18802083
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 0.95967631(48.69862390%)/1.01083155(51.29448896%)/0.00013572(0.00688714%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04814657 seconds.
[ 7%] Time step 5 done in 2.060660 seconds. Wall clock time: 10.996, time: 0.72947, time step size: 0.29769965
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.26521772(48.89266931%)/1.32233187(51.09977040%)/0.00019564(0.00756029%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04806234 seconds.
[ 12%] Time step 6 done in 2.691426 seconds. Wall clock time: 13.688, time: 1.20083, time step size: 0.47135778
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.27771621(48.82405213%)/1.33907903(51.16884610%)/0.00018585(0.00710177%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04817870 seconds.
[ 19%] Time step 7 done in 2.720932 seconds. Wall clock time: 16.409, time: 1.90786, time step size: 0.70703668
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.27635560(48.32649627%)/1.36457241(51.66663862%)/0.00018132(0.00686511%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04837157 seconds.
[ 30%] Time step 8 done in 2.745505 seconds. Wall clock time: 19.154, time: 2.96842, time step size: 1.06055501
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.28703688(48.70908916%)/1.35506024(51.28349543%)/0.00019594(0.00741542%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04841897 seconds.
[ 46%] Time step 9 done in 2.747992 seconds. Wall clock time: 21.902, time: 4.55925, time step size: 1.59083252
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.27011454(48.08293266%)/1.37121299(51.91023325%)/0.00018052(0.00683409%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04838746 seconds.
[ 69%] Time step 10 done in 2.745616 seconds. Wall clock time: 24.648, time: 6.94550, time step size: 2.38624878
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.27372658(48.61208584%)/1.34627708(51.38099319%)/0.00018134(0.00692096%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04840041 seconds.
[100%] Time step 11 done in 2.725102 seconds. Wall clock time: 27.373, time: 10.00000, time step size: 3.05449874
Simulation took 27.37315323 seconds on 1 processes.
The cumulative CPU time was 27.37315323 seconds.
# Runtime-specified parameters used:
[ BoundaryConditions ]
TInject = "293"
massFluxInjectedPhase = "0.75"
percentOfEquil = ".1"
[ Component ]
SolidDensity = "2600"
SolidHeatCapacity = "817"
SolidThermalConductivity = "3"
[ FluidSystem ]
nPressure = "100"
nTemperature = "100"
[ Grid ]
Cells0 = "14"
Cells1 = "15 15"
Grading0 = "1.0"
Grading1 = "-0.833333 0.833333"
Positions0 = "0.0 1.0"
Positions1 = "0.0 0.25 0.5"
[ InitialConditions ]
SwFFInitial = "1e-4"
SwPMInitial = "0.8"
TInitial = "293"
pnInitial = "1e5"
pnInjection = "100003"
[ Problem ]
Name = "test_mpnc_kinetic_box"
[ SpatialParams ]
[ SpatialParams.FreeFlow ]
meanPoreSize = "1e-2"
permeability = "1e-6"
porosity = "0.99"
[ SpatialParams.PorousMedium ]
factorEnergyTransfer = "1"
factorMassTransfer = "1"
meanPoreSize = "1e-4"
permeability = "1e-11"
porosity = "0.4"
[ SpatialParams.soil ]
BCPd = "2.290e+03"
BClambda = "2.740e+00"
Snr = "0"
Swr = "0"
aNonWettingSolidA1 = "1.369e+03"
aNonWettingSolidA2 = "-3.782e+00"
aNonWettingSolidA3 = "1.063e-09"
aWettingNonWettingA1 = "-1.603e-01"
aWettingNonWettingA2 = "1.429e-05"
aWettingNonWettingA3 = "1.915e-01"
[ TimeLoop ]
DtInitial = "0.05"
TEnd = "10"
[ Vtk ]
AddVelocity = "1"
# Global default parameters used:
[ Assembly ]
NumericDifferenceMethod = "1"
[ Flux ]
UpwindWeight = "1.0"
[ LinearSolver ]
MaxIterations = "250"
PreconditionerIterations = "1"
PreconditionerRelaxation = "1.0"
ResidualReduction = "1e-13"
Verbosity = "0"
[ Newton ]
EnableAbsoluteResidualCriterion = "false"
EnableChop = "false"
EnablePartialReassembly = "false"
EnableResidualCriterion = "false"
EnableShiftCriterion = "true"
MaxAbsoluteResidual = "1e-5"
MaxRelativeShift = "1e-8"
MaxSteps = "18"
ResidualReduction = "1e-5"
SatisfyResidualAndShiftCriterion = "false"
TargetSteps = "10"
UseLineSearch = "false"
[ Problem ]
EnableGravity = "true"
[ TimeLoop ]
MaxTimeStepSize = "1e300"
[ Vtk ]
AddProcessRank = "true"
# Unused parameters:
SpatialParams.soil.VGAlpha = "3.512e-04"
SpatialParams.soil.VGN = "4.716e+00"
SpatialParams.soil.specificSolidsurface = "4022.994"
SourceSink.heatIntoSolid = "0"
Constants.nRestart = "100"
FluidSystem.hammer = "1e4"
Chuck Norris has compiled DuMuX even two times in a row!
Fuzzy comparison...
Comparing /data/src/dumux/test/references/test_mpnc_kinetic_box-reference.vtu and /data/build/dumux/test/porousmediumflow/mpnc/implicit/kinetic/test_mpnc_kinetic_box-00011.vtu
... with a maximum relative error of 0.01 and a maximum absolute error of 1.5e-07*max_abs_parameter_value.
Data differs in parameter: velocity_gas (m/s)_1
Difference is too large: 8.70% -> between: 1.91128e-06 and 1.74495e-06
Info for velocity_gas (m/s)_1: max_abs_parameter_value=0.564606 and min_abs_parameter_value=1.74495e-06.
Data differs in parameter: velocity_liq (m/s)_0
Difference is too large: 1.00% -> between: 6.90209e-08 and 6.97191e-08
Info for velocity_liq (m/s)_0: max_abs_parameter_value=7.2564e-08 and min_abs_parameter_value=8.35171e-16.
Data differs in parameter: x^H2O_gas
Difference is too large: 55.46% -> between: 0.023197 and 0.0103322
Info for x^H2O_gas: max_abs_parameter_value=0.0232059 and min_abs_parameter_value=0.00232059.
Data differs in parameter: x^N2_gas
Difference is too large: 1.30% -> between: 0.976803 and 0.989668
Info for x^N2_gas: max_abs_parameter_value=0.997679 and min_abs_parameter_value=0.976794.
Test #155: test_mpnc_kinetic_box .............................***Failed 29.19 sec
```3.1Katharina HeckKatharina Heckhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/980Failing parallel tests2021-01-09T18:48:44ZTimo Kochtimokoch@math.uio.noFailing parallel testsParallel tests fail with
```
NotImplemented [get:/data/dune-istl/dune/istl/solverfactory.hh:190]: The solver factory is currently only implemented for sequential solvers!
```
for Dune 2.7, did we remove some version checks?Parallel tests fail with
```
NotImplemented [get:/data/dune-istl/dune/istl/solverfactory.hh:190]: The solver factory is currently only implemented for sequential solvers!
```
for Dune 2.7, did we remove some version checks?3.4Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/820Failing tests after change of VanGenuchten Law2020-03-24T09:36:27ZKilian WeishauptFailing tests after change of VanGenuchten Law3fff0a215373e66b081ea544b7e37ef277ee082a introduces some changes to the VanGenuchten Law.
Several reference solutions were updated afterwards but on my system,
* test_md_boundary_darcy2p2cni_stokes1p2cni_horizontal
and
* test_2p_in...3fff0a215373e66b081ea544b7e37ef277ee082a introduces some changes to the VanGenuchten Law.
Several reference solutions were updated afterwards but on my system,
* test_md_boundary_darcy2p2cni_stokes1p2cni_horizontal
and
* test_2p_incompressible_box_ifsolver
still fail (while passing on buildbot). Could somebody else try those tests?3.2https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/667Failing tests due to !15072019-02-28T15:14:00ZTimo Kochtimokoch@math.uio.noFailing tests due to !1507The MR !1507 changed the input file which is used for several tests but only adjusts one reference solution. The parameter should be instead just adjusted in the CMakelists for that specific test.The MR !1507 changed the input file which is used for several tests but only adjusts one reference solution. The parameter should be instead just adjusted in the CMakelists for that specific test.3.1https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/930Failing tests test_md_embedded1d3d_1p_richards_*2020-10-27T10:31:22ZTimo Kochtimokoch@math.uio.noFailing tests test_md_embedded1d3d_1p_richards_*master -> fails
release 3.2 -> fails
Error: Residual=nan in BiCGSTAB first time step, Newton fails to converge.
release 3.1 -> passesmaster -> fails
release 3.2 -> fails
Error: Residual=nan in BiCGSTAB first time step, Newton fails to converge.
release 3.1 -> passes3.3Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1072Failure of richards benchmark2021-08-20T18:39:45ZTimo Kochtimokoch@math.uio.noFailure of richards benchmarkThere was a spurious failure of the Richards benchmark in the CI. No such failure had been previously observed in many runs. The job log is attached [job_log](/uploads/de092059c7504c36e9b73073c68aa798/job_log)
Seems to be quite a consis...There was a spurious failure of the Richards benchmark in the CI. No such failure had been previously observed in many runs. The job log is attached [job_log](/uploads/de092059c7504c36e9b73073c68aa798/job_log)
Seems to be quite a consistent failure ~~after !2736~~ when using the new runner on sal.Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/849Fixed derivative in VanGenuchten makes tests fail2020-04-01T08:03:44ZTimo Kochtimokoch@math.uio.noFixed derivative in VanGenuchten makes tests failIn 44e10bfc84cc047d5e0278cb2b8886d51eee3a52 the derivative of Van Genuchten `krn_swe` was fixed. I thought it's not used anywhere. I overlooked that it's actually used in the regularization of `krn` for small saturations.In 44e10bfc84cc047d5e0278cb2b8886d51eee3a52 the derivative of Van Genuchten `krn_swe` was fixed. I thought it's not used anywhere. I overlooked that it's actually used in the regularization of `krn` for small saturations.3.2Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/851Fix `test_2p2cni_waterair_buoyancy_box`2020-04-06T18:37:59ZTimo Kochtimokoch@math.uio.noFix `test_2p2cni_waterair_buoyancy_box`I accidentally "fixed" the reference solution for `test_2p2cni_waterair_buoyancy_box` in !1932.
On BuildBot it fails however.
I know from many people that they have problems with this test. It doesn't seem to be very stable.
We should h...I accidentally "fixed" the reference solution for `test_2p2cni_waterair_buoyancy_box` in !1932.
On BuildBot it fails however.
I know from many people that they have problems with this test. It doesn't seem to be very stable.
We should have a better look at the test, identify what can be done to make it both a
good test for the 2p2cni model and make it tractable for reliable testing.3.2Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/889[freeflow][test] New convergence test fails2020-05-27T19:01:05ZTimo Kochtimokoch@math.uio.no[freeflow][test] New convergence test failsNew test merged in https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2128.
Fails on BuildBot setup.
I suspect that the convergence script does not use unique filenames so the two tests overwrite each other when...New test merged in https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2128.
Fails on BuildBot setup.
I suspect that the convergence script does not use unique filenames so the two tests overwrite each other when run in parallel. Possible bug in the Python script.3.3Kilian WeishauptKilian Weishaupthttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/642High residuals in poromechanics test el1p/el2p2019-01-02T14:52:45ZTimo Kochtimokoch@math.uio.noHigh residuals in poromechanics test el1p/el2p3.1Dennis GläserDennis Gläserhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1025InvertCubicPolynomial test fails2021-05-10T14:35:37ZDennis GläserInvertCubicPolynomial test failsIn our pipeline, `test_math` regularly fails. According to GitLab it failed 4 times in the last 14 days - although I think we have the CI only since about a week. The `invertCubicPolynomial` test seems to be the cause of error, here is t...In our pipeline, `test_math` regularly fails. According to GitLab it failed 4 times in the last 14 days - although I think we have the CI only since about a week. The `invertCubicPolynomial` test seems to be the cause of error, here is the output from tonight:
```sh
terminate called after throwing an instance of 'Dune::Exception'
what(): Dune::Exception [operator():/builds/dumux-repositories/dumux/test/common/math/test_math.cc:282]: [invertCubicPolynomial] Root 0 of 3: -7.81946 does not match reference
```
The night before, for instance, it seems that it did not fail. @timok, I believe you implemented this? I haven't looked into the test yet, but could it be that the deviation threshold in the test is chosen too small?3.4Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/720Merge of feature/improve-parameters breaks tests2019-06-04T09:25:06ZKilian WeishauptMerge of feature/improve-parameters breaks testsAfter the merge of 5c1c052467bbe86f903dac3f1de4990c41a03320, at least one test (test_ff_stokes_channel_3d) fails
because the output file changed its name from
`test_ff_stokes_channel_3d-00001.vtu` to `test_stokes_channel_3d-00001.vtu`
...After the merge of 5c1c052467bbe86f903dac3f1de4990c41a03320, at least one test (test_ff_stokes_channel_3d) fails
because the output file changed its name from
`test_ff_stokes_channel_3d-00001.vtu` to `test_stokes_channel_3d-00001.vtu`
`CMakeLists.txt` explicitly states
```
-Problem.Name test_ff_stokes_channel_3d
```
but somehow this is ignored and the name given in `parmas.input` is used.3.1Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1026Minimal CI Setup failing tests2021-05-10T12:22:33ZTimo Kochtimokoch@math.uio.noMinimal CI Setup failing tests421 - test_3p3cni_columnxylol_box (Failed)
427 - test_3pwateroil_sagd_box (Failed)
Probably related to the solver tolerance in the AMG without direct solver backend.421 - test_3p3cni_columnxylol_box (Failed)
427 - test_3pwateroil_sagd_box (Failed)
Probably related to the solver tolerance in the AMG without direct solver backend.3.4Dennis GläserDennis Gläser