dumux merge requestshttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests2018-12-19T12:53:09Zhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1436[cmake] Delete find package opm-common2018-12-19T12:53:09ZMartin Schneider[cmake] Delete find package opm-commonOpm-common changes some of the cmake variables
that are set by dune, e.g. HAVE_UMFPACK.
This should be fixed by these changes.Opm-common changes some of the cmake variables
that are set by dune, e.g. HAVE_UMFPACK.
This should be fixed by these changes.3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1435Merge branch 'cleanup/doxygen-for-3.0-porousmediumflow' into 'master'2018-12-19T12:22:39ZTimo Kochtimokoch@math.uio.noMerge branch 'cleanup/doxygen-for-3.0-porousmediumflow' into 'master'Cleanup/doxygen for 3.0 porousmediumflow
Closes #596
See merge request dumux-repositories/dumux!1416
(cherry picked from commit 72589d1600b138c267ec7ca690334634d757c0aa)
55a2be36 [doxygen] Adapt documentation for 1p, 1pnc, 1pncmin mo...Cleanup/doxygen for 3.0 porousmediumflow
Closes #596
See merge request dumux-repositories/dumux!1416
(cherry picked from commit 72589d1600b138c267ec7ca690334634d757c0aa)
55a2be36 [doxygen] Adapt documentation for 1p, 1pnc, 1pncmin models
47f93884 [doxygen] Adapt documentation for 2p, 2p1c, 2p2c, 2pnc, 2pncmin models
df53d24c [doxygen] Adapt documentation for 3p, 3p3c, 3pwateroil models
e69730ba [doxygen] Adapt documentation for boxdfm, co2, mpnc, mineralization models
7784c756 [doxygen] Adapt documentation for richards, richardsnc, tracer models
a06acdf4 [doxygen] Adapt documentation for nonequilibrium, nonisothermal models
57faf61d [doxygen] Adapt documentation for compositional, immiscible models and general
bd292ebf [doxygen] Adapt modules.txt and handbook.bib
76f567b6 [doxygen] Adapt documentation in 1p sequential
b9b3d5c6 [doxygen] Adapt documentation in 2p sequential
921a3b36 [doxygen] Adapt documentation in 2p2c sequential3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1433[doc][handbook] do not mention debug opts2018-12-19T14:17:23ZDennis Gläser[doc][handbook] do not mention debug optsdebug.opts and optim.opts do not exist anymore. This commit adapts the
respective section in the handbook.debug.opts and optim.opts do not exist anymore. This commit adapts the
respective section in the handbook.3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1432[test][facet][1pconvergence] remove UMFPack cmake guard2018-12-19T11:50:33ZDennis Gläser[test][facet][1pconvergence] remove UMFPack cmake guard3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1429[test][facet][1pconvergence] do not use umfpack2018-12-19T14:14:29ZDennis Gläser[test][facet][1pconvergence] do not use umfpackI tried with gcc6, gcc7, clang3.8 and clang6.0
Fixes #638 I tried with gcc6, gcc7, clang3.8 and clang6.0
Fixes #638 3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1428Merge branch 'feature/improve-handbook' into 'master'2018-12-18T19:36:39ZTimo Kochtimokoch@math.uio.noMerge branch 'feature/improve-handbook' into 'master'[handbook] Update for 3.0
Closes #484
See merge request dumux-repositories/dumux!1338
(cherry picked from commit b0ce2d5adf7b97044cbf68c3f49303706b9c3151)
9a28187b [handbook] rename domain G to Omega
30ead698 time discretization
f19d...[handbook] Update for 3.0
Closes #484
See merge request dumux-repositories/dumux!1338
(cherry picked from commit b0ce2d5adf7b97044cbf68c3f49303706b9c3151)
9a28187b [handbook] rename domain G to Omega
30ead698 time discretization
f19d0dc0 [handbook] Add link to DUNE cheatsheet.
a81c7e71 [handbook] Update structure and folder setup
46a6e2e6 [handbook] Update parameter section
f8021fa7 [handbook] Move passage about guidelines and delete .tex file
aeacd3d6 Mention where 'actual equations' can be found.
a65a0bb4 [handbook] Modify section on staggered grid discretization.
602eb230 [Handbook] replace tutorial section with dumux course reference
e818ce99 [handbook] updated 'getting started' chapter, split in 'quick start' and…
ed726526 [handbook] Update external modules list
6ea7a2d7 [handbook] Update dune-subgrid description in 2_detailedinstall.tex
a4ff23e9 [handbook] Update dune-sub and spgrid in 2_detailedinstall.tex corrected error in last commit
ae990d7c [handbook] Updated dune-subgrid description in 2_detailedinstall.tex
43e9ae6d [bugfix] Make handbook compile again
2ad6ee7d [handbook] update section on propertysystem to new syntax
4a4e3eaf [doc][handbook] Improve text on property system
b5e780f3 [handbook] Add passage about TTag inheritance order
5cfd24af Add the first draft of parrallel section
b16bd7ab Add the section input and outout
b411ac0a Add the section parralel
b0137f18 Finish the parallel and the input/output section.
747fa637 Add "Costumize the VTK output"
cb612777 [Handbook][Grids] remove external grid section, replace with paragraph in grid format subsection
88eb807a [handbook] Revise stepsofasimulation.
93ef16b6 [handbook][course] cleanup course text to match correct tag reference
02f42fc7 [handbook][3_course] add release tag for dumux-course and cleanup
7677fb70 [handbook][3_course] cleanup
8d47510a [handbook] Update CMakeLists for new tex-files and images
fc5fb34a [handbook][dalton] better image quality
a8e771ec [handbook][4_newfoldersetup] cleanup
1dabc408 [handbook] remove all mentioning of tutorial
74cc4fa9 [handbook][cleanup] Replace \ by \par.
2887b292 [handbook] Introduce to 3.0 and add link to wiki
8f4d1922 [temporal discretization]
68b884db [temporal discretization]
8a77e5e4 [handbook][gnuplot] cleanup
c0f0eec5 [handbook][io] cleanup gnuplot
9541a0b2 [handbook] Update box description
eb9ea429 [handbook][disc] Correction of indices used for the box method
aaf245dc [handbook][disc] Use mpfa stuff from Dennis
132fbb01 [handbook][disc] Add first draft of TPFA description
8ac05303 [handbook][disc] Add first draft of MPFA description
928687f8 [handbook][disc] Update tpfa description and general statements
bb148e5b [handbook][disc] Cleanup mpfa
0b1efc32 [handbook][box] Replace V_j by |B_j|
a900006d [handbook][disc] Use dx d\Gamma consistenly for integrals
11469e1c [handbook][box] Replace wrong scalar products in integrals
6808e8d1 [handbook][pics] Apply renaming of png folder
ac702b5e Merge branch 'feature/improve-handbook-discretization' into 'feature/improve-handbook'
3ab21f73 [handbook] Correct some mistakes in input/output and parallel
3b2dd5a3 [handbook][io] cleanup
a2db2fbc [handbook][parallel] cleanup
067ca3db [handbook][parallel] exceptions multidomain and freeflow
5cb67f60 [handbook] Update input output
824eb40b [handbook] Update parallel
ffa020ef Merge branch 'feature/improve-handbook_inoutput-parallel' into 'feature/improve-handbook'
719b48e0 [handbook] Add small section on restart
12829a9b Update contributors3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1427Merge branch 'fix/opm-suggestions' into 'master'2018-12-18T17:59:24ZTimo Kochtimokoch@math.uio.noMerge branch 'fix/opm-suggestions' into 'master'[opm] Add opm-common module to dune.module file
See merge request dumux-repositories/dumux!1426
(cherry picked from commit 8f477e97e28dcd9e84317a71e88625fffd43756d)
29754329 [opm] Add opm-common module to dune.module file[opm] Add opm-common module to dune.module file
See merge request dumux-repositories/dumux!1426
(cherry picked from commit 8f477e97e28dcd9e84317a71e88625fffd43756d)
29754329 [opm] Add opm-common module to dune.module file3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1426[opm] Add opm-common module to dune.module file2018-12-18T17:58:56ZMartin Schneider[opm] Add opm-common module to dune.module fileModules depending on dumux fail to build if opm-common
is not added hereModules depending on dumux fail to build if opm-common
is not added here3.0Martin SchneiderMartin Schneiderhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1425Merge branch 'update-contributors' into 'master'2018-12-18T17:17:36ZTimo Kochtimokoch@math.uio.noMerge branch 'update-contributors' into 'master'Update contributors
See merge request dumux-repositories/dumux!1424
(cherry picked from commit ee8a0013852517b9cebe5a4ead1db930f393fb12)
8f4e91c7 Update contributorsUpdate contributors
See merge request dumux-repositories/dumux!1424
(cherry picked from commit ee8a0013852517b9cebe5a4ead1db930f393fb12)
8f4e91c7 Update contributors3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1424Update contributors2018-12-18T17:17:05ZTimo Kochtimokoch@math.uio.noUpdate contributors3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1423Feature/improve handbook discretization2018-12-18T18:03:55ZMartin SchneiderFeature/improve handbook discretization3.0Dennis GläserDennis Gläserhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1422Merge branch 'cleanup/doxygen-for-3.0-tests' into 'master'2018-12-18T13:17:52ZTimo Kochtimokoch@math.uio.noMerge branch 'cleanup/doxygen-for-3.0-tests' into 'master'[doxygen] Cleanup/doxygen for 3.0 tests
See merge request dumux-repositories/dumux!1404
(cherry picked from commit 12b07f0b63215c8efeec74553a42062f0e02eae2)
689919e1 [doxygen] Add/modify documentation
aacfb75f [doxygen] Adapt document...[doxygen] Cleanup/doxygen for 3.0 tests
See merge request dumux-repositories/dumux!1404
(cherry picked from commit 12b07f0b63215c8efeec74553a42062f0e02eae2)
689919e1 [doxygen] Add/modify documentation
aacfb75f [doxygen] Adapt documentation for all 1p related tests
af703b06 [doxygen] Adapt documentation for all 2p related tests
aa2a1769 [doxygen] Adapt documentation for all 3p related tests
16e2517f [doxygen] Adapt documentation for co2 tests
88c1b546 [doxygen] Adapt documentation for mpnc tests
303bac48 [doxygen] Adapt documentation for richards tests
9aeb02bb [doxygen] Adapt documentation for tracer tests
3ae3bf32 [doc][freeflow] Improve docu for freeflow tests
86fdd52a [doxygen] Adapt documentation for material tests
f3b086d4 [doxygen] Fix more typos, blank spaces, etc. in tests folders
25269a4e [doxygen] Add missing citations in tests and handbook.bib
e420306d [doxygen] Adapt documentation for multidomain tests
5e34c2c0 [doxygen] Adapt documentation for geomechanics tests
58da3381 [doxygen] Remove doxygen command in main files3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1421Bugfix/turbulentdissipation nc2018-12-19T12:21:52ZNed ColtmanBugfix/turbulentdissipation ncfound this with @heck and Lisa Bahlmann.
Given >2 components, the multiple fields are titled D_t, and the component isn't specified. Here the component/phase are named like usual. Given multiple components, paraview crashes (multiple...found this with @heck and Lisa Bahlmann.
Given >2 components, the multiple fields are titled D_t, and the component isn't specified. Here the component/phase are named like usual. Given multiple components, paraview crashes (multiple fields with the same name)
* [x] update compositional rans test field names.3.0Katharina HeckKatharina Heckhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1420Merge branch 'feature/opm-newest-version' into 'master'2018-12-18T11:08:00ZTimo Kochtimokoch@math.uio.noMerge branch 'feature/opm-newest-version' into 'master'Feature/opm newest version
See merge request dumux-repositories/dumux!1419
(cherry picked from commit 7941a31fb803bf2f67f41edfb78af6bbffec7b09)
2bd37f28 [installexternal] Update to newest opm release
d3f8ef87 [patches] Delete unnecess...Feature/opm newest version
See merge request dumux-repositories/dumux!1419
(cherry picked from commit 7941a31fb803bf2f67f41edfb78af6bbffec7b09)
2bd37f28 [installexternal] Update to newest opm release
d3f8ef87 [patches] Delete unnecessary patches
2541ce80 [cmake][opts] Add opm cmake variables to opts-file
2bd6a660 [install] Update opm installation output3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1419Feature/opm newest version2018-12-18T11:06:56ZMartin SchneiderFeature/opm newest version3.0Bernd FlemischBernd Flemischhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1418[cmake] Don't install tests2018-12-17T20:42:32ZTimo Kochtimokoch@math.uio.no[cmake] Don't install testsFixes #631Fixes #6313.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1417[readme] Fix typo2018-12-17T18:11:47ZTimo Kochtimokoch@math.uio.no[readme] Fix typo3.0https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1416Cleanup/doxygen for 3.0 porousmediumflow2018-12-19T12:01:32ZSina AckermannCleanup/doxygen for 3.0 porousmediumflow* [x] Adapt documentation for sequential models
Fixes #596.* [x] Adapt documentation for sequential models
Fixes #596.3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1415[license] Upgrade license to GPL >= 32018-12-17T16:36:09ZTimo Kochtimokoch@math.uio.no[license] Upgrade license to GPL >= 33.0Bernd FlemischBernd Flemischhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1414[mpfa][fluxlaws] use correct flux sign switch query2018-12-18T07:49:20ZDennis Gläser[mpfa][fluxlaws] use correct flux sign switch queryThe queries if the sign of a flux has to be flipped was done in the wrong way in fickslaw and fouriers law. This lead to compiler errors in the context of models that consider e.g. diffusion but no advection. Also, it would have introduc...The queries if the sign of a flux has to be flipped was done in the wrong way in fickslaw and fouriers law. This lead to compiler errors in the context of models that consider e.g. diffusion but no advection. Also, it would have introduced wrong flux signs in mpfa schemes in which the interaction volume regions depend on cell parameters (e.g. mpfa-l).3.0Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.no