dumux merge requestshttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests2021-07-18T13:09:29Zhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2716Remove deprecation warning from Vtk::FieldType2021-07-18T13:09:29ZHanchuan WuRemove deprecation warning from Vtk::FieldTypeCloses #1053
Backport to 3.4Closes #1053
Backport to 3.43.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2713[porousmediumflow][velocity] Remove namespace Dune from referenceElement2021-07-18T19:32:45ZTimo Kochtimokoch@math.uio.no[porousmediumflow][velocity] Remove namespace Dune from referenceElement* allow ADL
backport to 3.4* allow ADL
backport to 3.43.4Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2712Deprecate old dumux mapper.update() interface"2021-07-17T19:13:12ZHanchuan WuDeprecate old dumux mapper.update() interface"Closes #1051Closes #10513.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2711Remove deprecation warning from mapper.update()2021-07-17T00:02:44ZHanchuan WuRemove deprecation warning from mapper.update()Closes #1051Closes #10513.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2709feature/add-extract-module-python-script2021-07-30T18:27:16ZDennis Gläserfeature/add-extract-module-python-scriptContinuation of !2654
Closes #1021 Closes #1037
TODO:
- [x] fix issue with quotations in patches (TODO: test shell script case - see explanation below)
- [x] after getting rid of the patches the `getCurrentTimeStamp` function is now o...Continuation of !2654
Closes #1021 Closes #1037
TODO:
- [x] fix issue with quotations in patches (TODO: test shell script case - see explanation below)
- [x] after getting rid of the patches the `getCurrentTimeStamp` function is now obsolete. We could remove it.
- [x] test several situations
- [x] change code using snake_case to camelCase
- [x] squash commits, at least those from !2654
- [x] make sure that paths are printed correctly without intermediate `../` or `.`
- [x] Allow untracked files in module dependencies (-> create patches for them)
- [x] Fix generated CMakeLists to contain only one subfolder level
- [x] Fix the missing opts file if `dumux` is not copied
- [x] Apply patch in a correct order: untracked->uncommitted->unpublished.3.4Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2703Merge branch 'mention-dependencies' into 'releases/3.4'2021-07-07T11:57:18ZHanchuan WuMerge branch 'mention-dependencies' into 'releases/3.4'mention version requirements for Dune, CMake and OPM in the CHANGELOG
See merge request dumux-repositories/dumux!2702
(cherry picked from commit ac95cf09c0f62003a76afa0bf66ac81759549d07)
eaeabc14 mention version requirements for Dune,...mention version requirements for Dune, CMake and OPM in the CHANGELOG
See merge request dumux-repositories/dumux!2702
(cherry picked from commit ac95cf09c0f62003a76afa0bf66ac81759549d07)
eaeabc14 mention version requirements for Dune, CMake and OPM in the CHANGELOG3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2702mention version requirements for Dune, CMake and OPM in the CHANGELOG2021-07-07T11:56:09ZBernd Flemischmention version requirements for Dune, CMake and OPM in the CHANGELOGPlease port also to master.Please port also to master.3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2699[bin][installDumux] Add missing cd for commands which ask user to copy & run2021-07-07T14:59:23ZHanchuan Wu[bin][installDumux] Add missing cd for commands which ask user to copy & run3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2677Draft: Check CMakeLists.txt files2021-06-08T23:23:21ZHanchuan WuDraft: Check CMakeLists.txt files<!--
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**What this MR does / why does DuMux need it**: Update cmake files
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**What this MR does / why does DuMux need it**: Update cmake files
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fixes #1044
-->3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2676Resolve "Unify guards for uggrid"2021-06-28T12:45:42ZHanchuan WuResolve "Unify guards for uggrid"Closes #1043Closes #10433.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2675Fix make headercheck2021-06-28T17:14:13ZHanchuan WuFix make headercheckFixes #1040Fixes #10403.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2674Improve python script extrat module part2021-06-06T20:48:14ZHanchuan WuImprove python script extrat module part3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2671[test][math] Lower precision for polynomial test2021-06-02T18:04:15ZTimo Kochtimokoch@math.uio.no[test][math] Lower precision for polynomial testWhen the roots are very close together the inversion becomes ill-conditioned.
Exclude these cases from the random generation, test some corner cases
with close roots and decrease the tolerance for root comparison.
Needs backport to rele...When the roots are very close together the inversion becomes ill-conditioned.
Exclude these cases from the random generation, test some corner cases
with close roots and decrease the tolerance for root comparison.
Needs backport to releases 3.43.4Dennis GläserDennis Gläserhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2666[handbook] Fix path of example and add hint to website guide2021-06-02T15:55:48ZTimo Kochtimokoch@math.uio.no[handbook] Fix path of example and add hint to website guideNeeds backportNeeds backport3.4Dennis GläserDennis Gläserhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2664[handbook] Fix and update installation instructions2021-06-02T16:20:44ZTimo Kochtimokoch@math.uio.no[handbook] Fix and update installation instructionsIn particular remove non-recommended installation command that also
contained an outdated --use-cmake option which doesn't exist anymore.
Needs backporting to 3.4In particular remove non-recommended installation command that also
contained an outdated --use-cmake option which doesn't exist anymore.
Needs backporting to 3.43.4Dennis GläserDennis Gläserhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2654WIP: refactor-make-install-script2021-07-26T18:41:30ZDennis GläserWIP: refactor-make-install-scriptThe install-script functionality (or similar) is now in bin/extractmodule/util.py
Closes #1021
Closes #1037The install-script functionality (or similar) is now in bin/extractmodule/util.py
Closes #1021
Closes #10373.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2648[dune.module][release/3.4] Fix version to stable version number2021-05-31T16:41:04ZTimo Kochtimokoch@math.uio.no[dune.module][release/3.4] Fix version to stable version number3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2647[install] update script versions to 3.42021-05-27T13:11:54ZSimon Emmert[install] update script versions to 3.4Bumps the dumux version to 3.4 in the install scripts
We merge this right before the final release, correct?Bumps the dumux version to 3.4 in the install scripts
We merge this right before the final release, correct?3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2645[cleanup][boxdfm] Remove CubeTopology deprecation warning2021-05-26T19:58:59ZTimo Kochtimokoch@math.uio.no[cleanup][boxdfm] Remove CubeTopology deprecation warning3.4Ned ColtmanNed Coltmanhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2642[mailmap][license] Update Theresas lastname in mailmap and license2021-05-31T17:02:37ZSimon Emmert[mailmap][license] Update Theresas lastname in mailmap and licenseI adapted the mailmap file for Theresa (and myself) and the lincense to now show Theresas new lastname.
@tkurz: please check if I wrote your lastname and email address correctly. You can then approve this MR before Hanchuan merges.I adapted the mailmap file for Theresa (and myself) and the lincense to now show Theresas new lastname.
@tkurz: please check if I wrote your lastname and email address correctly. You can then approve this MR before Hanchuan merges.3.4Hanchuan WuHanchuan Wu