dumux merge requestshttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests2021-08-20T18:56:45Zhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2777Merge branch 'fix/test-richards-benchmark-robustness' into 'master'2021-08-20T18:56:45ZTimo Kochtimokoch@math.uio.noMerge branch 'fix/test-richards-benchmark-robustness' into 'master'[richards][benchmark] Use direct solver for more robust test
Closes #1072
See merge request dumux-repositories/dumux!2775
(cherry picked from commit bb36f03d480c402a2899a6c611ac815667a57a94)
733173b0 [richards][test][benchmark] Use d...[richards][benchmark] Use direct solver for more robust test
Closes #1072
See merge request dumux-repositories/dumux!2775
(cherry picked from commit bb36f03d480c402a2899a6c611ac815667a57a94)
733173b0 [richards][test][benchmark] Use direct solver to increaes test robustness3.4https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2763Merge branch 'bernd-master-patch-25084' into 'master'2021-08-19T10:59:40ZBernd FlemischMerge branch 'bernd-master-patch-25084' into 'master'Improve CHANGELOG.md by mentioning a new feature and pointing to the release branch
See merge request dumux-repositories/dumux!2762
(cherry picked from commit 4455a367f42bc2ea985045737073c4f3e8c3f76d)
451abb59 Improve CHANGELOG.md by ...Improve CHANGELOG.md by mentioning a new feature and pointing to the release branch
See merge request dumux-repositories/dumux!2762
(cherry picked from commit 4455a367f42bc2ea985045737073c4f3e8c3f76d)
451abb59 Improve CHANGELOG.md by mentioning a new feature and pointing to the release branch3.4Bernd FlemischBernd Flemischhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2762Improve CHANGELOG.md by mentioning a new feature and pointing to the release ...2021-08-03T07:01:18ZBernd FlemischImprove CHANGELOG.md by mentioning a new feature and pointing to the release branch3.4Bernd FlemischBernd Flemischhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2761Merge branch 'fix/headercheck-for-3.4' into 'releases/3.4'2021-08-02T18:24:57ZHanchuan WuMerge branch 'fix/headercheck-for-3.4' into 'releases/3.4'fix headercheck for the dumux folder
See merge request dumux-repositories/dumux!2760
(cherry picked from commit edce36d9be8ed6144f09458c06fb2028b87a3db8)
ed561229 fix headercheck for the dumux folder
ec7c98bb [examples] include requir...fix headercheck for the dumux folder
See merge request dumux-repositories/dumux!2760
(cherry picked from commit edce36d9be8ed6144f09458c06fb2028b87a3db8)
ed561229 fix headercheck for the dumux folder
ec7c98bb [examples] include required header3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2760fix headercheck for the dumux folder2021-08-02T16:33:45ZBernd Flemischfix headercheck for the dumux folder3.4https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2756Fix missing header2021-08-02T17:41:30ZHanchuan WuFix missing header3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2753fix CHANGELOG.md for 3.42021-08-02T07:44:09ZBernd Flemischfix CHANGELOG.md for 3.43.4Bernd FlemischBernd Flemischhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2748[issue_templates] Remove duplicate and Add update doc task2021-07-30T18:28:44ZHanchuan Wu[issue_templates] Remove duplicate and Add update doc task3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2743Merge branch 'fix/deprecation-warning-reordering-dof-mapper' into 'master'2021-07-29T10:23:05ZTimo Kochtimokoch@math.uio.noMerge branch 'fix/deprecation-warning-reordering-dof-mapper' into 'master'[reorderingdofmapper] Remove deprecation warning from update
See merge request dumux-repositories/dumux!2739
(cherry picked from commit fd32ff61e72941c7fdb76693f092ca659f9ffc2a)
a73ebe1a [reorderingdofmapper] Remove deprecation warnin...[reorderingdofmapper] Remove deprecation warning from update
See merge request dumux-repositories/dumux!2739
(cherry picked from commit fd32ff61e72941c7fdb76693f092ca659f9ffc2a)
a73ebe1a [reorderingdofmapper] Remove deprecation warning from update3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2739[reorderingdofmapper] Remove deprecation warning from update2021-07-29T08:55:41ZTimo Kochtimokoch@math.uio.no[reorderingdofmapper] Remove deprecation warning from update3.4Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2732Merge branch 'fix/python-ci' into 'master'2021-07-28T10:26:52ZTimo Kochtimokoch@math.uio.noMerge branch 'fix/python-ci' into 'master'Fixes #1061
[ci][python] Test Python bindings
Closes #1042.
See merge request dumux-repositories/dumux!2731
(cherry picked from commit c31c8f3f158ed1cd43734c8b6ccb7dbc051f6792)
2c698a69 [ci][python] Test Python bindingsFixes #1061
[ci][python] Test Python bindings
Closes #1042.
See merge request dumux-repositories/dumux!2731
(cherry picked from commit c31c8f3f158ed1cd43734c8b6ccb7dbc051f6792)
2c698a69 [ci][python] Test Python bindings3.4Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2731[ci][python] Test Python bindings2021-07-28T10:00:00ZTimo Kochtimokoch@math.uio.no[ci][python] Test Python bindingsCloses #1042Closes #10423.4Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2727Merge branch 'cleanup/remove-deprecated-warnings-for-releases-3.4' into 'master'2021-07-23T09:39:45ZHanchuan WuMerge branch 'cleanup/remove-deprecated-warnings-for-releases-3.4' into 'master'Resolve "Remove deprecated warnings"
Closes #1055
See merge request dumux-repositories/dumux!2725
(cherry picked from commit 15ea79b6dfe84e83c9c9498a9e6cbfdc4cfffc7f)
5265a4de [cleanup] Remove decpreated warnings from dumux-customise...Resolve "Remove deprecated warnings"
Closes #1055
See merge request dumux-repositories/dumux!2725
(cherry picked from commit 15ea79b6dfe84e83c9c9498a9e6cbfdc4cfffc7f)
5265a4de [cleanup] Remove decpreated warnings from dumux-customised mapper.update3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2725Resolve "Remove deprecated warnings"2021-07-23T08:45:42ZHanchuan WuResolve "Remove deprecated warnings"Closes #1055Closes #10553.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2716Remove deprecation warning from Vtk::FieldType2021-07-18T13:09:29ZHanchuan WuRemove deprecation warning from Vtk::FieldTypeCloses #1053
Backport to 3.4Closes #1053
Backport to 3.43.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2714Merge branch 'feature/remove-deprecation-warning-from-mapper-update' into 'ma...2021-07-17T15:18:53ZTimo Kochtimokoch@math.uio.noMerge branch 'feature/remove-deprecation-warning-from-mapper-update' into 'master'Remove deprecation warning from mapper.update()
Closes #1051
See merge request dumux-repositories/dumux!2711
(cherry picked from commit 3d75f3fcbf4c8be4349c2e7d282be83c4a79293b)
9af849b7 [deprecated] Add deprecation helpers for mappe...Remove deprecation warning from mapper.update()
Closes #1051
See merge request dumux-repositories/dumux!2711
(cherry picked from commit 3d75f3fcbf4c8be4349c2e7d282be83c4a79293b)
9af849b7 [deprecated] Add deprecation helpers for mapper.update()
db174bd4 [mapper] Allow for new interface mapper.update(gridView) and deprecate usage of old mappers3.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2713[porousmediumflow][velocity] Remove namespace Dune from referenceElement2021-07-18T19:32:45ZTimo Kochtimokoch@math.uio.no[porousmediumflow][velocity] Remove namespace Dune from referenceElement* allow ADL
backport to 3.4* allow ADL
backport to 3.43.4Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2712Deprecate old dumux mapper.update() interface"2021-07-17T19:13:12ZHanchuan WuDeprecate old dumux mapper.update() interface"Closes #1051Closes #10513.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2711Remove deprecation warning from mapper.update()2021-07-17T00:02:44ZHanchuan WuRemove deprecation warning from mapper.update()Closes #1051Closes #10513.4Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2709feature/add-extract-module-python-script2021-07-30T18:27:16ZDennis Gläserfeature/add-extract-module-python-scriptContinuation of !2654
Closes #1021 Closes #1037
TODO:
- [x] fix issue with quotations in patches (TODO: test shell script case - see explanation below)
- [x] after getting rid of the patches the `getCurrentTimeStamp` function is now o...Continuation of !2654
Closes #1021 Closes #1037
TODO:
- [x] fix issue with quotations in patches (TODO: test shell script case - see explanation below)
- [x] after getting rid of the patches the `getCurrentTimeStamp` function is now obsolete. We could remove it.
- [x] test several situations
- [x] change code using snake_case to camelCase
- [x] squash commits, at least those from !2654
- [x] make sure that paths are printed correctly without intermediate `../` or `.`
- [x] Allow untracked files in module dependencies (-> create patches for them)
- [x] Fix generated CMakeLists to contain only one subfolder level
- [x] Fix the missing opts file if `dumux` is not copied
- [x] Apply patch in a correct order: untracked->uncommitted->unpublished.3.4Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.no