dumux merge requestshttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests2022-04-18T11:53:26Zhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3005Add graph partitioning via Scotch2022-04-18T11:53:26ZLarissa BrencherAdd graph partitioning via ScotchTask: Implement graph partitioning via PT-Scotch package and use the resulting partitioning for UG's load balancer
Fixes #812, fixes #1110
- [x] ~~parallelization (change graph to dgraph)~~ -> #1141
- [x] extract as header file
- [x] ...Task: Implement graph partitioning via PT-Scotch package and use the resulting partitioning for UG's load balancer
Fixes #812, fixes #1110
- [x] ~~parallelization (change graph to dgraph)~~ -> #1141
- [x] extract as header file
- [x] write tests3.5Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2999[mpnc] include a dune throw for zero fugacity coefficients as the mpnc model does not work with zero fugacity coefficients2022-04-14T07:51:48ZKatharina Heck[mpnc] include a dune throw for zero fugacity coefficients as the mpnc model does not work with zero fugacity coefficientsfixes #1084
This includes a check for all fugacity coefficients that they are not 0.fixes #1084
This includes a check for all fugacity coefficients that they are not 0.3.5Theresa SchollenbergerTheresa Schollenbergerhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3034[test] Remove test description in porous medium flow tests2022-04-07T12:50:35ZMathis Kelm[test] Remove test description in porous medium flow testsRemove test descriptions in porous medium flow tests to avoid being outdated (fixes #1106). The other tests, as well as `porousmediumflow/1p/` have already been addressed in !2988.
Progress through test folders:
- [x] 2p @stefaniekiemle...Remove test descriptions in porous medium flow tests to avoid being outdated (fixes #1106). The other tests, as well as `porousmediumflow/1p/` have already been addressed in !2988.
Progress through test folders:
- [x] 2p @stefaniekiemle
- [x] 2p1c @stefaniekiemle
- [x] 2p2c @stefaniekiemle
- [x] 2pnc @stefaniekiemle
- [x] 2pncmin @stefaniekiemle
- [x] 3p @IvBu
- [x] 3p3c @IvBu
- [x] 3pwateroil @IvBu
- [x] co2 @IvBu
- [x] mpnc @IvBu
- [x] richards @yue
- [x] richardsnc @yue
- [x] solidenergy @yue
- [x] tracer @yue3.5Mathis KelmMathis Kelmhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3031Modify the bed shear stress calculation within the shallow water friction laws.2022-04-07T11:17:20ZMartin UtzModify the bed shear stress calculation within the shallow water friction laws.The function `shearStress` returns the bed shear stress normalized by the water density. This normalisation is unfavourable, since the name of the function (and also the documentation) does not reflect it. Also the name `shearStress` its...The function `shearStress` returns the bed shear stress normalized by the water density. This normalisation is unfavourable, since the name of the function (and also the documentation) does not reflect it. Also the name `shearStress` itself is confusing, since the bed shear stress is not a classical shear stress tensor. The name `bedShearStress` is more clear, since it points to the context of shallow water equations.
TODOs:
- [x] Modify the function `shearStress` to return the bed shear stress and not the bed shear stress normalized by the water density.
- [x] Return the positive shear stress
- [x] Rename `shearStress` to `bedShearStress`
- [x] Improve docs3.5Martin UtzMartin Utzhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2996Improve PNM grid creator2022-04-05T09:11:16ZKilian WeishauptImprove PNM grid creator3.5Hanchuan WuHanchuan Wuhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3041[test][multidomain] resolve deprecation warnings2022-04-01T18:28:43ZMathis Kelm[test][multidomain] resolve deprecation warningsAdopts new multidomain constructors, resolving deprecation warnings as discussed in #1068. Fixes #1068.Adopts new multidomain constructors, resolving deprecation warnings as discussed in #1068. Fixes #1068.3.5Mathis KelmMathis Kelmhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3037Feature/ff momentum numeqtype bcs2022-04-01T13:00:11ZNed ColtmanFeature/ff momentum numeqtype bcsfixes #895 and #1085fixes #895 and #10853.5Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2954Cleanup parameter list generator and input files2022-04-01T11:28:14ZYue Wangyue.wang@iws.uni-stuttgart.deCleanup parameter list generator and input files3.5Yue Wangyue.wang@iws.uni-stuttgart.deYue Wangyue.wang@iws.uni-stuttgart.dehttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3033[fix][richards] Extended richards: Fix balancequationoptions and do porosity update before evaluating effective diffusion coefficients2022-04-01T09:59:00ZKatharina Heck[fix][richards] Extended richards: Fix balancequationoptions and do porosity update before evaluating effective diffusion coefficients<!--
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**What this MR does / why does DuMux need it**:
The richards model never overwrote the balancequation options...<!--
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**What this MR does / why does DuMux need it**:
The richards model never overwrote the balancequation options, which is why, although diffusion was calculated (for the extendend Richards model that considers water diffusion in the gas phase), it was immediatly also substracted, leading to a net diffusive flux of 0. With the richards-specific balancequationopts it depends on the phase index if diffusion is balanced or not. Additionally, the porosity in the volumevariables was updated at the wrong place, now it is updated before the effective diffusion coefficient.
This correction also made it necessary to change the boundary condition in the richards evaporation tests. a fixed value does not work if the liquid phase actually disappears.
fixes #11343.5Katharina HeckKatharina Heckhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3035move gstatrandomfield from dumux/material/spatialparams to dumux/material2022-03-31T22:42:10ZRoman Wintermove gstatrandomfield from dumux/material/spatialparams to dumux/materialcloses #1114closes #11143.5Roman WinterRoman Winterhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3040Cleanup/fix dependencies installexternal2022-03-31T22:24:04ZMathis KelmCleanup/fix dependencies installexternalAdd required dependencies to package `dumux-course` and change version of `dune-mmesh` to `release/1.3`.
Fixes #1137Add required dependencies to package `dumux-course` and change version of `dune-mmesh` to `release/1.3`.
Fixes #11373.5Mathis KelmMathis Kelmhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3012Component-aware dispersion2022-03-31T14:16:48ZDmitry PavlovComponent-aware dispersionIt will be useful to allow different dispersion parameters for different components, even when they are in one phase. For instance, single-well chemical tracer tests are usually modeled in one phase (oil is immobile), but dispersion coef...It will be useful to allow different dispersion parameters for different components, even when they are in one phase. For instance, single-well chemical tracer tests are usually modeled in one phase (oil is immobile), but dispersion coefficients for different components are different.
See e.g. [this article](
https://doi.org/10.2118/129724-MS
): "Dispersivity is taken to be a history match parameter and can be different for each tracer".
Fixes #11043.5Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3039Cleanup/move tensor average helper2022-03-31T12:29:51ZMathis KelmCleanup/move tensor average helperMove the tensor-averaging helpers for interfaces from spatialparams to a separate header in `dumux/flux`.
Closes #1097Move the tensor-averaging helpers for interfaces from spatialparams to a separate header in `dumux/flux`.
Closes #10973.5Mathis KelmMathis Kelmhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3038[handbook] change the version of supported compilers2022-03-31T08:34:37ZYue Wangyue.wang@iws.uni-stuttgart.de[handbook] change the version of supported compilersUpdate the version of compilers in handbook.Update the version of compilers in handbook.3.5https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2415Improve brine fluidsystem2022-03-30T22:04:42ZTheresa SchollenbergerImprove brine fluidsystemCloses #970Closes #9703.5Johannes HommelJohannes Hommelhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/1781Add script to extract CO2 tables from NIST website2022-03-30T22:03:58ZMartin UtzAdd script to extract CO2 tables from NIST websiteThis MR provides a python script, which can create CO2 tables, like the one used in the CO2 test. The tables contain density and enthalpy values for a specified temperature and pressure range. The CO2 tables are created by the help of a ...This MR provides a python script, which can create CO2 tables, like the one used in the CO2 test. The tables contain density and enthalpy values for a specified temperature and pressure range. The CO2 tables are created by the help of a website (https://webbook.nist.gov/chemistry/fluid), which calculate the needed values. The query for the values is automated by the python script, which also does the formatting of the received values.
The former way to generate the CO2 table was a Fortran script, which can't be published due to copy right issues. Therefore it was decided in #690 to use the NIST website and a python script to generate the new CO2 tables. Both approaches use the formula of Span and Wagner to calculate the values and produce the same result (within a acceptable tolerance). The new approach has the advantage, that we can publish the script.3.5Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2856[material][components] add temperature dependent vaporization enthalpy to gas enthalpy of simpleh2o2022-03-30T18:41:30ZKatharina Heck[material][components] add temperature dependent vaporization enthalpy to gas enthalpy of simpleh2o<!--
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**What this MR does / why does DuMux need it**:
This adds the vaporization enthalpy to the gas enthalpy. This...<!--
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**What this MR does / why does DuMux need it**:
This adds the vaporization enthalpy to the gas enthalpy. This is needed for components that can have a phase change. A temperature dependence on tRef is introduced according to a simple formula found in literature.
Remark: This is consistent with constant component as both calculate the gas enthalpy as
```gasHeatCapacity(temperature, pressure)*(temperature - tRef) + vaporizationEnthalpy()```. However, for constant component the vaporization enthalpy is an input value (constant) while simpleh2o uses the calculation based on literature.
**Which issue this MR fixes**:
fixes #1013
Todo:
- [x] check if any test is influenced by this. so far i could not find one3.5Katharina HeckKatharina Heckhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3032Feature/handbook update2022-03-30T14:09:28ZIvan BunticFeature/handbook updateMR to issue #1133.MR to issue #1133.3.5Ivan BunticIvan Buntichttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2988[test] Remove test description (except porous medium flow tests)2022-03-30T10:17:18ZLarissa Brencher[test] Remove test description (except porous medium flow tests)Remove test descriptions to avoid being outdated (#1106 and #1110)
Progress through test folders:
- [x] common
- [x] discretization
- [x] flux
- [x] freeflow
- [x] geomechanics
- [x] geometry
- [x] io
- [x] linear
- [x] material
- [x] m...Remove test descriptions to avoid being outdated (#1106 and #1110)
Progress through test folders:
- [x] common
- [x] discretization
- [x] flux
- [x] freeflow
- [x] geomechanics
- [x] geometry
- [x] io
- [x] linear
- [x] material
- [x] multidomain
- [x] nonlinear
- [x] porenetwork
- [ ] porousmediumflow
- [x] 1p* folders
- [ ] ~~remaining folders~~ -> separate MR
- [x] python
- [x] references
- [x] timestepping3.5https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/3030Examples for Dumux 3.52022-03-28T09:53:54ZSina AckermannExamples for Dumux 3.5- [x] update READMEs according to latest commits (code changes)
- [x] check if everything compiles and runs (tests)- [x] update READMEs according to latest commits (code changes)
- [x] check if everything compiles and runs (tests)3.5Yue Wangyue.wang@iws.uni-stuttgart.deYue Wangyue.wang@iws.uni-stuttgart.de