dumux-repositories issueshttps://git.iws.uni-stuttgart.de/groups/dumux-repositories/-/issues2023-10-26T08:13:30Zhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1180New Compositional Staggered2023-10-26T08:13:30ZNed ColtmanNew Compositional Staggeredmentioned in #1115
Implementation and ported tests addressed in !2986 .
New Analytical solution and convergence test implemented in !3044 . Also implemented for old staggered in !3561 .
Troubleshooting branch: `feature/misc_naviersto...mentioned in #1115
Implementation and ported tests addressed in !2986 .
New Analytical solution and convergence test implemented in !3044 . Also implemented for old staggered in !3561 .
Troubleshooting branch: `feature/misc_navierstokesnc` .
Using this issue to collect all of the ideas and progress we have made (the MRs are not organized for this)3.8Ned ColtmanNed Coltmanhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1185TabularizedComponent is not thread-safe2022-10-04T14:02:06ZTimo Kochtimokoch@math.uio.noTabularizedComponent is not thread-safeI've `test_1pncni_transientbc_tpfa_caching` failing spuriously/rarely and the error message is usually not conclusive.
See e.g. https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/jobs/120228 were an error is thrown.I've `test_1pncni_transientbc_tpfa_caching` failing spuriously/rarely and the error message is usually not conclusive.
See e.g. https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/jobs/120228 were an error is thrown.3.6Mathis KelmMathis Kelmhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1153Spurious segfault of test_1p_convergence_box2022-05-27T08:31:03ZTimo Kochtimokoch@math.uio.noSpurious segfault of test_1p_convergence_box```
315/545 Test #314: test_1p_convergence_box_conforming .........................***Exception: SegFault 0.55 sec
670Chuck Norris has successfully compiled DuMuX.
671Reading parameters from file params.input.
672 --- Solving finest sol...```
315/545 Test #314: test_1p_convergence_box_conforming .........................***Exception: SegFault 0.55 sec
670Chuck Norris has successfully compiled DuMuX.
671Reading parameters from file params.input.
672 --- Solving finest solution (dx = 0.0125) ---
673Computed bounding box tree with 12799 nodes for 6400 grid entites in 0.00150703 seconds.
674Colored 6400 elements with 4 colors in 0.001164546 seconds.
675Assemble: r(x^k) = dS/dt + div F - q; M = grad r -- Using the default temperature of 293.15 in the entire domain. Overload temperatureAtPos() in your spatial params class to define a custom temperature field.Or provide the preferred domain temperature via the SpatialParams.Temperature parameter.
676Update: x^(k+1) = x^k - deltax^kAssemble/solve/update time: 0.0062936(24.8438%)/0.0190219(75.0882%)/1.723e-05(0.0680149%)
677Writing output for problem "test_1p_convergence_box_conforming". Took 0.025 seconds.
678 --- Solving with dx = 10 ---
679Computed bounding box tree with 199 nodes for 100 grid entites in 2.2181e-05 seconds.
680Colored 100 elements with 4 colors in 2.577e-05 seconds.
681Assemble: r(x^k) = dS/dt + div F - q; M = grad r[runner-d5rncghq-project-31-concurrent-0:03562] *** Process received signal ***
682[runner-d5rncghq-project-31-concurrent-0:03562] Signal: Segmentation fault (11)
683[runner-d5rncghq-project-31-concurrent-0:03562] Signal code: Address not mapped (1)
684[runner-d5rncghq-project-31-concurrent-0:03562] Failing at address: 0x8
685[runner-d5rncghq-project-31-concurrent-0:03562] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f3da283b420]
686[runner-d5rncghq-project-31-concurrent-0:03562] [ 1] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt18_Rb_tree_decrementPSt18_Rb_tree_node_base+0xe)[0x7f3da220125e]
687
```
Most likely some multithreading issue. `test_1p_convergence_box_nonconforming` has the same spurious failures.
Here is another one from master.
```
315/545 Test #315: test_1p_convergence_box_nonconforming ......................***Exception: SegFault 0.58 sec
Let's get the cow off the ice.
Reading parameters from file params.input.
--- Solving finest solution (dx = 0.0125) ---
Computed bounding box tree with 12799 nodes for 6400 grid entites in 0.00205371 seconds.
Colored 6400 elements with 4 colors in 0.001878195 seconds.
Assemble: r(x^k) = dS/dt + div F - q; M = grad r -- Using the default temperature of 293.15 in the entire domain. Overload temperatureAtPos() in your spatial params class to define a custom temperature field.Or provide the preferred domain temperature via the SpatialParams.Temperature parameter.
Update: x^(k+1) = x^k - deltax^kAssemble/solve/update time: 0.00675025(21.4533%)/0.0246765(78.4254%)/3.819e-05(0.121373%)
Writing output for problem "test_1p_convergence_box_conforming". Took 0.049 seconds.
--- Solving with dx = 10 ---
Computed bounding box tree with 199 nodes for 100 grid entites in 2.8831e-05 seconds.
Colored 100 elements with 4 colors in 3.9071e-05 seconds.
Assemble: r(x^k) = dS/dt + div F - q; M = grad r[runner-d5rncghq-project-31-concurrent-0:03605] *** Process received signal ***
[runner-d5rncghq-project-31-concurrent-0:03605] Signal: Segmentation fault (11)
[runner-d5rncghq-project-31-concurrent-0:03605] Signal code: Address not mapped (1)
[runner-d5rncghq-project-31-concurrent-0:03605] Failing at address: 0x8
[runner-d5rncghq-project-31-concurrent-0:03605] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f44a89eb420]
[runner-d5rncghq-project-31-concurrent-0:03605] [ 1] /lib/x86_64-linux-gnu/libstdc++.so.6(_ZSt18_Rb_tree_decrementPSt18_Rb_tree_node_base+0xe)[0x7f44a83b125e]
[runner-d5rncghq-project-31-concurrent-0:03605] [ 2] /builds/dumux-repositories/dumux/build-cmake/test/porousmediumflow/1p/convergence/discretesolution/test_1p_convergence_box(+0xde397)[0x56271ee9a397]
[runner-d5rncghq-project-31-concurrent-0:03605] [ 3] /builds/dumux-repositories/dumux/build-cmake/test/porousmediumflow/1p/convergence/discretesolution/test_1p_convergence_box(+0xdea8f)[0x56271ee9aa8f]
[runner-d5rncghq-project-31-concurrent-0:03605] [ 4] /builds/dumux-repositories/dumux/build-cmake/test/porousmediumflow/1p/convergence/discretesolution/test_1p_convergence_box(+0x103083)[0x56271eebf083]
[runner-d5rncghq-project-31-concurrent-0:03605] [ 5] /builds/dumux-repositories/dumux/build-cmake/test/porousmediumflow/1p/convergence/discretesolution/test_1p_convergence_box(+0x105f82)[0x56271eec1f82]
[runner-d5rncghq-project-31-concurrent-0:03605] [ 6] /lib/x86_64-linux-gnu/libgomp.so.1(+0x1a78e)[0x7f44a896b78e]
[runner-d5rncghq-project-31-concurrent-0:03605] [ 7] /lib/x86_64-linux-gnu/libpthread.so.0(+0x8609)[0x7f44a89df609]
[runner-d5rncghq-project-31-concurrent-0:03605] [ 8] /lib/x86_64-linux-gnu/libc.so.6(clone+0x43)[0x7f44a80b0133]
[runner-d5rncghq-project-31-concurrent-0:03605] *** End of error message ***
```3.5Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1150Unexpected interaction of fmt libraries2022-05-11T07:18:30ZTimo Kochtimokoch@math.uio.noUnexpected interaction of fmt librariesopm-common also ships fmt as we do. There seems to be some strange interaction such that when opm-common is present our unit test fails: https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/jobs/88066. Maybe the opm-shipped librar...opm-common also ships fmt as we do. There seems to be some strange interaction such that when opm-common is present our unit test fails: https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/jobs/88066. Maybe the opm-shipped library is included and there is a version mismatch of some sort.
```
121/545 Test #119: test_format ................................................Child aborted***Exception: 0.27 sec
terminate called after throwing an instance of 'Dune::Exception'
what(): Dune::Exception [testString:/builds/dumux-repositories/dumux/test/io/format/test_format.cc:15]: Unexpected result: Hubble's H₀ ≅42 miles/sec/mpc., expected Hubble's H₀ ≅ 42 miles/sec/mpc.
```3.5Bernd FlemischBernd Flemischhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1148Failed test_co2_tpfa/test_co2_tpfani2022-05-03T17:07:06ZTimo Kochtimokoch@math.uio.noFailed test_co2_tpfa/test_co2_tpfanirtest_co2_tpfa: /dune/modules/dune-alugrid/dune/alugrid/3d/entityseed.hh:78: static bool Dune::ALU3dGridEntitySeedBase<0, const Dune::ALU3dGrid<2, 2, Dune::hexa, Dune::ALUGridMPIComm> >::Bnd<0, ALUGrid::Gitter::hasFace>::isGhost(Dune::AL...rtest_co2_tpfa: /dune/modules/dune-alugrid/dune/alugrid/3d/entityseed.hh:78: static bool Dune::ALU3dGridEntitySeedBase<0, const Dune::ALU3dGrid<2, 2, Dune::hexa, Dune::ALUGridMPIComm> >::Bnd<0, ALUGrid::Gitter::hasFace>::isGhost(Dune::ALU3dGridEntitySeedBase::KeyType *) [codim = 0, GridImp = const Dune::ALU3dGrid<2, 2, Dune::hexa, Dune::ALUGridMPIComm>, cd = 0, Key = ALUGrid::Gitter::hasFace]: Assertion `key' failed.
with dune master + clang.3.5Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/985Richards benchmark test fails due to assert in spline2021-02-01T12:29:22ZTimo Kochtimokoch@math.uio.noRichards benchmark test fails due to assert in splineProbably something with the regularization of krw/pc-sw. The regularized interval approximated by the spline might be too small? It could also be that the assert is wrong. Needs closer investigation.Probably something with the regularization of krw/pc-sw. The regularized interval approximated by the spline might be too small? It could also be that the assert is wrong. Needs closer investigation.3.4Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/930Failing tests test_md_embedded1d3d_1p_richards_*2020-10-27T10:31:22ZTimo Kochtimokoch@math.uio.noFailing tests test_md_embedded1d3d_1p_richards_*master -> fails
release 3.2 -> fails
Error: Residual=nan in BiCGSTAB first time step, Newton fails to converge.
release 3.1 -> passesmaster -> fails
release 3.2 -> fails
Error: Residual=nan in BiCGSTAB first time step, Newton fails to converge.
release 3.1 -> passes3.3Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/889[freeflow][test] New convergence test fails2020-05-27T19:01:05ZTimo Kochtimokoch@math.uio.no[freeflow][test] New convergence test failsNew test merged in https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2128.
Fails on BuildBot setup.
I suspect that the convergence script does not use unique filenames so the two tests overwrite each other when...New test merged in https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/merge_requests/2128.
Fails on BuildBot setup.
I suspect that the convergence script does not use unique filenames so the two tests overwrite each other when run in parallel. Possible bug in the Python script.3.3Kilian WeishauptKilian Weishaupthttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/732test_ff_stokes_channel_3d fails with different velocity2019-07-01T07:32:34ZSimon Emmerttest_ff_stokes_channel_3d fails with different velocity<!--
This form is for bug reports ONLY!
If you're looking for help check out the [readme](/README.md).
-->
**Bug report**
`test_ff_stokes_channel_3d fails`with different velocity
**What happened / Problem description**:
!1637 changed ...<!--
This form is for bug reports ONLY!
If you're looking for help check out the [readme](/README.md).
-->
**Bug report**
`test_ff_stokes_channel_3d fails`with different velocity
**What happened / Problem description**:
!1637 changed the handling of inflow/outflow BC and adapted the reference solution, yet the test fails on buildbot with
```
Data differs in parameter: velocity_liq (m/s)_1
Difference is too large: 199.76% -> between: -1.65925e-12 and 1.6632e-12
Info for velocity_liq (m/s)_1: max_abs_parameter_value=6.83831e-12 and min_abs_parameter_value=0.0.
For parameter velocity_liq (m/s)_1 a zero value threshold of 1e-12 was given.
Data differs in parameter: velocity_liq (m/s)_2
Difference is too large: 127.12% -> between: -4.17537e-13 and 1.53955e-12
Info for velocity_liq (m/s)_2: max_abs_parameter_value=1.89138e-12 and min_abs_parameter_value=0.0.
For parameter velocity_liq (m/s)_2 a zero value threshold of 1e-12 was given.
Test #17: test_ff_stokes_channel_3d ...............................***Failed 1.62 sec
```
**How to reproduce it (as minimally and precisely as possible)**:
Dune and DuMuX master, compiling and running the test.
**Anything else we need to know?**:
Maybe @melaniel can state the version & compiler details she used when generating the reference. I will be trying to reproduce a result tomorrow morning, too. Maybe it is compiler/machine dependent.
**Environment**:
- Dune version: master
- DuMux version: master
- Others: gcc 5.3 & gcc 7.4.4 (but with vel_1: 196.66% and vel_2: 135.84% difference) 3.1https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/720Merge of feature/improve-parameters breaks tests2019-06-04T09:25:06ZKilian WeishauptMerge of feature/improve-parameters breaks testsAfter the merge of 5c1c052467bbe86f903dac3f1de4990c41a03320, at least one test (test_ff_stokes_channel_3d) fails
because the output file changed its name from
`test_ff_stokes_channel_3d-00001.vtu` to `test_stokes_channel_3d-00001.vtu`
...After the merge of 5c1c052467bbe86f903dac3f1de4990c41a03320, at least one test (test_ff_stokes_channel_3d) fails
because the output file changed its name from
`test_ff_stokes_channel_3d-00001.vtu` to `test_stokes_channel_3d-00001.vtu`
`CMakeLists.txt` explicitly states
```
-Problem.Name test_ff_stokes_channel_3d
```
but somehow this is ignored and the name given in `parmas.input` is used.3.1Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/695Failing non-equil tests after merging !14962019-05-04T13:49:31ZTimo Kochtimokoch@math.uio.noFailing non-equil tests after merging !1496After merging !1496 `test_1p2c_nonequilibrium_tpfa` `test_mpnc_kinetic_box` fail now on buildbot.
In the case of `test_1p2c_nonequilibrium_tpfa` an fv geometry cache is accessed which is not in the stencil.
```
Test command: /data/src/...After merging !1496 `test_1p2c_nonequilibrium_tpfa` `test_mpnc_kinetic_box` fail now on buildbot.
In the case of `test_1p2c_nonequilibrium_tpfa` an fv geometry cache is accessed which is not in the stencil.
```
Test command: /data/src/dumux/bin/testing/runtest.py "--script" "fuzzy" "--files" "/data/src/dumux/test/references/test_1p2c_nonequilibrium_tpfa-reference.vtu" "/data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa-00044.vtu" "--command" "/data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa params.input -Problem.Name test_1p2c_nonequilibrium_tpfa" "--zeroThreshold" "{"velocity_liq (m/s)_1":1e-15}"
Test timeout computed to be: 300
You idiot! You signed the order to destroy Earth!
- Douglas Adams, HGttG
Reading parameters from file params.input.
The H2O-N2 fluid system was configured with the following policy:
- use H2O density as liquid mixture density: true
- use ideal gas density: true
- use N2 viscosity as gas mixture viscosity: true
- use N2 heat conductivity as gas mixture heat conductivity: true
- use ideal gas heat capacities: true
-------------------------------------------------------------------------
Initializing tables for the H2O fluid properties (20000 entries).
Temperature -> min: 2.731e+02, max: 6.231e+02, n: 100
Pressure -> min: 0.000e+00, max: 2.000e+07, n: 200
-------------------------------------------------------------------------
problem uses mole fractions
Writing output for problem "test_1p2c_nonequilibrium_tpfa". Took 8.889e-01 seconds.
Assemble: r(x^k) = dS/dt + div F - q; M = grad rtest_1p2c_nonequilibrium_tpfa: /data/src/dumux/dumux/discretization/cellcentered/tpfa/fvelementgeometry.hh:536: const LocalIndexType Dumux::CCTpfaFVElementGeometry::findLocalIndex(Dumux::CCTpfaFVElementGeometry::GridIndexType, const std::vector::GridIndex>&) const [with GG = Dumux::CCTpfaFVGridGeometry > >, false, Dumux::CCTpfaDefaultGridGeometryTraits > >, Dumux::DefaultMapperTraits > >, Dune::MultipleCodimMultipleGeomTypeMapper > >, Dune::Impl::MCMGFailLayout>, Dune::MultipleCodimMultipleGeomTypeMapper > >, Dune::Impl::MCMGFailLayout> > > >; Dumux::CCTpfaFVElementGeometry::LocalIndexType = unsigned int; Dumux::CCTpfaFVElementGeometry::GridIndexType = unsigned int; typename Dumux::IndexTraits::GridIndex = unsigned int]: Assertion `it != indices.end() && "Could not find the scv/scvf! Make sure to properly bind this class!"' failed.
[behandla:19637] *** Process received signal ***
[behandla:19637] Signal: Aborted (6)
[behandla:19637] Signal code: (-6)
[behandla:19637] [ 0] /lib/x86_64-linux-gnu/libpthread.so.0(+0x12890)[0x7f3fc9448890]
[behandla:19637] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xc7)[0x7f3fc9083e97]
[behandla:19637] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x141)[0x7f3fc9085801]
[behandla:19637] [ 3] /lib/x86_64-linux-gnu/libc.so.6(+0x3039a)[0x7f3fc907539a]
[behandla:19637] [ 4] /lib/x86_64-linux-gnu/libc.so.6(+0x30412)[0x7f3fc9075412]
[behandla:19637] [ 5] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(+0xd0faf)[0x55c4b4287faf]
[behandla:19637] [ 6] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZNK5Dumux41NonEquilibriumLocalResidualImplementationINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaELb0EE11computeFluxERKNS_36OnePTwoCThermalNonequilibriumProblemIS3_EERKN4Dune6EntityILi0ELi2EKNS9_8YaspGridILi2ENS9_22EquidistantCoordinatesIdLi2EEEEENS9_10YaspEntityEEERKNS_23CCTpfaFVElementGeometryINS_20CCTpfaFVGridGeometryINS9_8GridViewINS9_25DefaultLeafGridViewTraitsISF_EEEELb0ENS_31CCTpfaDefaultGridGeometryTraitsISP_NS_19DefaultMapperTraitsISP_NS9_35MultipleCodimMultipleGeomTypeMapperISP_NS9_4Impl14MCMGFailLayoutEEESV_EEEEEELb0EEERKNS_28CCTpfaElementVolumeVariablesINS_21CCGridVolumeVariablesINS_38CCTpfaDefaultGridVolumeVariablesTraitsIS6_NS_43NonEquilibriumVolumeVariablesImplementationINS_27OnePNCVolumeVariablesTraitsINS9_11FieldVectorIdLi4EEENS_12FluidSystems11OnePAdapterINS19_5H2ON2IdNS19_18H2ON2DefaultPolicyILb1EEEEELi0EEENS_24NonEquilibriumFluidStateIdS1F_EENS_12SolidSystems15InertSolidPhaseIdNS_10Components8ConstantILi1EdEEEENS_15InertSolidStateIdS1N_EEdNS_25NonEquilibriumModelTraitsINS_30OnePNCUnconstrainedModelTraitsINS_17OnePNCModelTraitsILi2ELb1ELi2EEEEELb0ELb1ELi1ELi1ELNS_18NusseltFormulationE1ELNS_19SherwoodFormulationE0EEEEENS_21OnePNCVolumeVariablesIS1Y_EELb0ELb1ELi1EEEEELb0EEELb0EEERKNS_26CCTpfaSubControlVolumeFaceISP_NS_31CCTpfaDefaultScvfGeometryTraitsISP_EEEERKNS_31CCTpfaElementFluxVariablesCacheINS_28CCTpfaGridFluxVariablesCacheIS6_NS_44PorousMediumFluxVariablesCacheImplementationIS3_LNS_20DiscretizationMethodE2EEENS_50PorousMediumFluxVariablesCacheFillerImplementationIS3_LS2G_2EEELb0ENS_26CCTpfaDefaultGridFVCTraitsIS6_S2H_S2J_EEEELb0EEE+0x1713)[0x55c4b431b873]
[behandla:19637] [ 7] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZNK5Dumux15CCLocalResidualINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaEE8evalFluxERKNS_36OnePTwoCThermalNonequilibriumProblemIS3_EERKN4Dune6EntityILi0ELi2EKNS9_8YaspGridILi2ENS9_22EquidistantCoordinatesIdLi2EEEEENS9_10YaspEntityEEERKNS_23CCTpfaFVElementGeometryINS_20CCTpfaFVGridGeometryINS9_8GridViewINS9_25DefaultLeafGridViewTraitsISF_EEEELb0ENS_31CCTpfaDefaultGridGeometryTraitsISP_NS_19DefaultMapperTraitsISP_NS9_35MultipleCodimMultipleGeomTypeMapperISP_NS9_4Impl14MCMGFailLayoutEEESV_EEEEEELb0EEERKNS_28CCTpfaElementVolumeVariablesINS_21CCGridVolumeVariablesINS_38CCTpfaDefaultGridVolumeVariablesTraitsIS6_NS_43NonEquilibriumVolumeVariablesImplementationINS_27OnePNCVolumeVariablesTraitsINS9_11FieldVectorIdLi4EEENS_12FluidSystems11OnePAdapterINS19_5H2ON2IdNS19_18H2ON2DefaultPolicyILb1EEEEELi0EEENS_24NonEquilibriumFluidStateIdS1F_EENS_12SolidSystems15InertSolidPhaseIdNS_10Components8ConstantILi1EdEEEENS_15InertSolidStateIdS1N_EEdNS_25NonEquilibriumModelTraitsINS_30OnePNCUnconstrainedModelTraitsINS_17OnePNCModelTraitsILi2ELb1ELi2EEEEELb0ELb1ELi1ELi1ELNS_18NusseltFormulationE1ELNS_19SherwoodFormulationE0EEEEENS_21OnePNCVolumeVariablesIS1Y_EELb0ELb1ELi1EEEEELb0EEELb0EEERKNS_31CCTpfaElementFluxVariablesCacheINS_28CCTpfaGridFluxVariablesCacheIS6_NS_44PorousMediumFluxVariablesCacheImplementationIS3_LNS_20DiscretizationMethodE2EEENS_50PorousMediumFluxVariablesCacheFillerImplementationIS3_LS2A_2EEELb0ENS_26CCTpfaDefaultGridFVCTraitsIS6_S2B_S2D_EEEELb0EEERKNS_26CCTpfaSubControlVolumeFaceISP_NS_31CCTpfaDefaultScvfGeometryTraitsISP_EEEE+0x2e3)[0x55c4b431bf03]
[behandla:19637] [ 8] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZNK5Dumux15FVLocalResidualINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaEE17evalFluxAndSourceERKN4Dune6EntityILi0ELi2EKNS5_8YaspGridILi2ENS5_22EquidistantCoordinatesIdLi2EEEEENS5_10YaspEntityEEERKNS_23CCTpfaFVElementGeometryINS_20CCTpfaFVGridGeometryINS5_8GridViewINS5_25DefaultLeafGridViewTraitsISB_EEEELb0ENS_31CCTpfaDefaultGridGeometryTraitsISL_NS_19DefaultMapperTraitsISL_NS5_35MultipleCodimMultipleGeomTypeMapperISL_NS5_4Impl14MCMGFailLayoutEEESR_EEEEEELb0EEERKNS_28CCTpfaElementVolumeVariablesINS_21CCGridVolumeVariablesINS_38CCTpfaDefaultGridVolumeVariablesTraitsINS_36OnePTwoCThermalNonequilibriumProblemIS3_EENS_43NonEquilibriumVolumeVariablesImplementationINS_27OnePNCVolumeVariablesTraitsINS5_11FieldVectorIdLi4EEENS_12FluidSystems11OnePAdapterINS17_5H2ON2IdNS17_18H2ON2DefaultPolicyILb1EEEEELi0EEENS_24NonEquilibriumFluidStateIdS1D_EENS_12SolidSystems15InertSolidPhaseIdNS_10Components8ConstantILi1EdEEEENS_15InertSolidStateIdS1L_EEdNS_25NonEquilibriumModelTraitsINS_30OnePNCUnconstrainedModelTraitsINS_17OnePNCModelTraitsILi2ELb1ELi2EEEEELb0ELb1ELi1ELi1ELNS_18NusseltFormulationE1ELNS_19SherwoodFormulationE0EEEEENS_21OnePNCVolumeVariablesIS1W_EELb0ELb1ELi1EEEEELb0EEELb0EEERKNS_31CCTpfaElementFluxVariablesCacheINS_28CCTpfaGridFluxVariablesCacheIS12_NS_44PorousMediumFluxVariablesCacheImplementationIS3_LNS_20DiscretizationMethodE2EEENS_50PorousMediumFluxVariablesCacheFillerImplementationIS3_LS28_2EEELb0ENS_26CCTpfaDefaultGridFVCTraitsIS12_S29_S2B_EEEELb0EEERKNS_22CCElementBoundaryTypesE+0x341)[0x55c4b431c3e1]
[behandla:19637] [ 9] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZNK5Dumux20FVLocalAssemblerBaseINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaENS_11FVAssemblerIS3_LNS_10DiffMethodE0ELb1EEENS_16CCLocalAssemblerIS3_S6_LS5_0ELb1EEELb1EE17evalLocalResidualEv+0xd6)[0x55c4b431ccb6]
[behandla:19637] [10] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZN5Dumux16CCLocalAssemblerINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaENS_11FVAssemblerIS3_LNS_10DiffMethodE0ELb1EEELS5_0ELb1EE31assembleJacobianAndResidualImplERN4Dune10BCRSMatrixINS8_11FieldMatrixIdLi4ELi4EEESaISB_EEERNS_27NonEquilibriumGridVariablesIS3_EE+0x74d)[0x55c4b433ef4d]
[behandla:19637] [11] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_ZNK5Dumux11FVAssemblerINS_10Properties4TTag35OnePTwoCThermalNonequilibriumCCTpfaELNS_10DiffMethodE0ELb1EE9assemble_IZNS5_27assembleJacobianAndResidualINS_18PartialReassemblerIS5_EEEEvRKN4Dune11BlockVectorINSA_11FieldVectorIdLi4EEESaISD_EEEPKT_EUlRKNSA_6EntityILi0ELi2EKNSA_8YaspGridILi2ENSA_22EquidistantCoordinatesIdLi2EEEEENSA_10YaspEntityEEEE_EEvOSI_+0x132)[0x55c4b4340b52]
[behandla:19637] [12] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(main+0xeb3)[0x55c4b4282c53]
[behandla:19637] [13] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7f3fc9066b97]
[behandla:19637] [14] /data/build/dumux/test/porousmediumflow/1pnc/implicit/nonequilibrium/test_1p2c_nonequilibrium_tpfa(_start+0x2a)[0x55c4b4286a2a]
[behandla:19637] *** End of error message ***
63/186 Test #63: test_1p2c_nonequilibrium_tpfa .....................***Failed 1.82 sec
```
```
Test command: /data/src/dumux/bin/testing/runtest.py "--script" "fuzzy" "--files" "/data/src/dumux/test/references/test_mpnc_kinetic_box-reference.vtu" "/data/build/dumux/test/porousmediumflow/mpnc/implicit/kinetic/test_mpnc_kinetic_box-00011.vtu" "--command" "/data/build/dumux/test/porousmediumflow/mpnc/implicit/kinetic/test_mpnc_kinetic_box params.input -Problem.Name test_mpnc_kinetic_box"
Test timeout computed to be: 300
Chuck Norris has successfully compiled DuMuX.
Reading parameters from file params.input.
The H2O-N2 fluid system was configured with the following policy:
- use H2O density as liquid mixture density: true
- use ideal gas density: true
- use N2 viscosity as gas mixture viscosity: true
- use N2 heat conductivity as gas mixture heat conductivity: true
- use ideal gas heat capacities: true
-------------------------------------------------------------------------
Initializing tables for the H2O fluid properties (10000 entries).
Temperature -> min: 2.780e+02, max: 4.531e+02, n: 100
Pressure -> min: 7.500e+04, max: 2.250e+05, n: 100
-------------------------------------------------------------------------
Writing output for problem "test_mpnc_kinetic_box". Took 6.039e-01 seconds.
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.278e+00(4.768e+01%)/1.402e+00(5.231e+01%)/3.405e-04(1.270e-02%)
Writing output for problem "test_mpnc_kinetic_box". Took 4.812e-02 seconds.
[ 1%] Time step 1 done in 2.736643 seconds. Wall clock time: 2.785, time: 0.05000, time step size: 0.05000000
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 0.95099143(48.46939834%)/1.01091940(51.52376100%)/0.00013422(0.00684067%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04853347 seconds.
[ 1%] Time step 2 done in 2.051791 seconds. Wall clock time: 4.837, time: 0.12500, time step size: 0.07500000
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 0.94914820(48.59345643%)/1.00394319(51.39879041%)/0.00015144(0.00775316%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04807224 seconds.
[ 2%] Time step 3 done in 2.043512 seconds. Wall clock time: 6.880, time: 0.24375, time step size: 0.11875000
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 0.95115055(48.39749146%)/1.01398697(51.59480356%)/0.00015143(0.00770497%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04845110 seconds.
[ 4%] Time step 4 done in 2.055532 seconds. Wall clock time: 8.936, time: 0.43177, time step size: 0.18802083
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 0.95967631(48.69862390%)/1.01083155(51.29448896%)/0.00013572(0.00688714%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04814657 seconds.
[ 7%] Time step 5 done in 2.060660 seconds. Wall clock time: 10.996, time: 0.72947, time step size: 0.29769965
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.26521772(48.89266931%)/1.32233187(51.09977040%)/0.00019564(0.00756029%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04806234 seconds.
[ 12%] Time step 6 done in 2.691426 seconds. Wall clock time: 13.688, time: 1.20083, time step size: 0.47135778
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.27771621(48.82405213%)/1.33907903(51.16884610%)/0.00018585(0.00710177%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04817870 seconds.
[ 19%] Time step 7 done in 2.720932 seconds. Wall clock time: 16.409, time: 1.90786, time step size: 0.70703668
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.27635560(48.32649627%)/1.36457241(51.66663862%)/0.00018132(0.00686511%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04837157 seconds.
[ 30%] Time step 8 done in 2.745505 seconds. Wall clock time: 19.154, time: 2.96842, time step size: 1.06055501
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.28703688(48.70908916%)/1.35506024(51.28349543%)/0.00019594(0.00741542%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04841897 seconds.
[ 46%] Time step 9 done in 2.747992 seconds. Wall clock time: 21.902, time: 4.55925, time step size: 1.59083252
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.27011454(48.08293266%)/1.37121299(51.91023325%)/0.00018052(0.00683409%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04838746 seconds.
[ 69%] Time step 10 done in 2.745616 seconds. Wall clock time: 24.648, time: 6.94550, time step size: 2.38624878
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble: r(x^k) = dS/dt + div F - q; M = grad r
Assemble/solve/update time: 1.27372658(48.61208584%)/1.34627708(51.38099319%)/0.00018134(0.00692096%)
Writing output for problem "test_mpnc_kinetic_box". Took 0.04840041 seconds.
[100%] Time step 11 done in 2.725102 seconds. Wall clock time: 27.373, time: 10.00000, time step size: 3.05449874
Simulation took 27.37315323 seconds on 1 processes.
The cumulative CPU time was 27.37315323 seconds.
# Runtime-specified parameters used:
[ BoundaryConditions ]
TInject = "293"
massFluxInjectedPhase = "0.75"
percentOfEquil = ".1"
[ Component ]
SolidDensity = "2600"
SolidHeatCapacity = "817"
SolidThermalConductivity = "3"
[ FluidSystem ]
nPressure = "100"
nTemperature = "100"
[ Grid ]
Cells0 = "14"
Cells1 = "15 15"
Grading0 = "1.0"
Grading1 = "-0.833333 0.833333"
Positions0 = "0.0 1.0"
Positions1 = "0.0 0.25 0.5"
[ InitialConditions ]
SwFFInitial = "1e-4"
SwPMInitial = "0.8"
TInitial = "293"
pnInitial = "1e5"
pnInjection = "100003"
[ Problem ]
Name = "test_mpnc_kinetic_box"
[ SpatialParams ]
[ SpatialParams.FreeFlow ]
meanPoreSize = "1e-2"
permeability = "1e-6"
porosity = "0.99"
[ SpatialParams.PorousMedium ]
factorEnergyTransfer = "1"
factorMassTransfer = "1"
meanPoreSize = "1e-4"
permeability = "1e-11"
porosity = "0.4"
[ SpatialParams.soil ]
BCPd = "2.290e+03"
BClambda = "2.740e+00"
Snr = "0"
Swr = "0"
aNonWettingSolidA1 = "1.369e+03"
aNonWettingSolidA2 = "-3.782e+00"
aNonWettingSolidA3 = "1.063e-09"
aWettingNonWettingA1 = "-1.603e-01"
aWettingNonWettingA2 = "1.429e-05"
aWettingNonWettingA3 = "1.915e-01"
[ TimeLoop ]
DtInitial = "0.05"
TEnd = "10"
[ Vtk ]
AddVelocity = "1"
# Global default parameters used:
[ Assembly ]
NumericDifferenceMethod = "1"
[ Flux ]
UpwindWeight = "1.0"
[ LinearSolver ]
MaxIterations = "250"
PreconditionerIterations = "1"
PreconditionerRelaxation = "1.0"
ResidualReduction = "1e-13"
Verbosity = "0"
[ Newton ]
EnableAbsoluteResidualCriterion = "false"
EnableChop = "false"
EnablePartialReassembly = "false"
EnableResidualCriterion = "false"
EnableShiftCriterion = "true"
MaxAbsoluteResidual = "1e-5"
MaxRelativeShift = "1e-8"
MaxSteps = "18"
ResidualReduction = "1e-5"
SatisfyResidualAndShiftCriterion = "false"
TargetSteps = "10"
UseLineSearch = "false"
[ Problem ]
EnableGravity = "true"
[ TimeLoop ]
MaxTimeStepSize = "1e300"
[ Vtk ]
AddProcessRank = "true"
# Unused parameters:
SpatialParams.soil.VGAlpha = "3.512e-04"
SpatialParams.soil.VGN = "4.716e+00"
SpatialParams.soil.specificSolidsurface = "4022.994"
SourceSink.heatIntoSolid = "0"
Constants.nRestart = "100"
FluidSystem.hammer = "1e4"
Chuck Norris has compiled DuMuX even two times in a row!
Fuzzy comparison...
Comparing /data/src/dumux/test/references/test_mpnc_kinetic_box-reference.vtu and /data/build/dumux/test/porousmediumflow/mpnc/implicit/kinetic/test_mpnc_kinetic_box-00011.vtu
... with a maximum relative error of 0.01 and a maximum absolute error of 1.5e-07*max_abs_parameter_value.
Data differs in parameter: velocity_gas (m/s)_1
Difference is too large: 8.70% -> between: 1.91128e-06 and 1.74495e-06
Info for velocity_gas (m/s)_1: max_abs_parameter_value=0.564606 and min_abs_parameter_value=1.74495e-06.
Data differs in parameter: velocity_liq (m/s)_0
Difference is too large: 1.00% -> between: 6.90209e-08 and 6.97191e-08
Info for velocity_liq (m/s)_0: max_abs_parameter_value=7.2564e-08 and min_abs_parameter_value=8.35171e-16.
Data differs in parameter: x^H2O_gas
Difference is too large: 55.46% -> between: 0.023197 and 0.0103322
Info for x^H2O_gas: max_abs_parameter_value=0.0232059 and min_abs_parameter_value=0.00232059.
Data differs in parameter: x^N2_gas
Difference is too large: 1.30% -> between: 0.976803 and 0.989668
Info for x^N2_gas: max_abs_parameter_value=0.997679 and min_abs_parameter_value=0.976794.
Test #155: test_mpnc_kinetic_box .............................***Failed 29.19 sec
```3.1Katharina HeckKatharina Heckhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/667Failing tests due to !15072019-02-28T15:14:00ZTimo Kochtimokoch@math.uio.noFailing tests due to !1507The MR !1507 changed the input file which is used for several tests but only adjusts one reference solution. The parameter should be instead just adjusted in the CMakelists for that specific test.The MR !1507 changed the input file which is used for several tests but only adjusts one reference solution. The parameter should be instead just adjusted in the CMakelists for that specific test.3.1https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/642High residuals in poromechanics test el1p/el2p2019-01-02T14:52:45ZTimo Kochtimokoch@math.uio.noHigh residuals in poromechanics test el1p/el2p3.1Dennis GläserDennis Gläserhttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/561BrineCO2 phaseIdx assertion in test_fluidsystems2018-08-30T07:15:33ZSimon EmmertBrineCO2 phaseIdx assertion in test_fluidsystemsOur fluidsystems-test fails (line 159), because the assertion of ``assert(restrictPhaseIdx_ < 0 || restrictPhaseIdx_ == phaseIdx);`` fails for the pressure.
I guess this has to do with the brine-adapter, but could not fix it or it did n...Our fluidsystems-test fails (line 159), because the assertion of ``assert(restrictPhaseIdx_ < 0 || restrictPhaseIdx_ == phaseIdx);`` fails for the pressure.
I guess this has to do with the brine-adapter, but could not fix it or it did not make perfect sense to me right away. Does someone have an idea? If not this should be perfect for the dumux day.3.0https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1308test_ff_stokes_channel_3d_nonuniform_diamond fails with timeout2023-11-13T07:36:27ZTimo Kochtimokoch@math.uio.notest_ff_stokes_channel_3d_nonuniform_diamond fails with timeoutSeems to be hanging sometimes: https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/jobs/223698Seems to be hanging sometimes: https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/jobs/2236983.8https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1158test_1pnc_maxwellstefan_tpfa (Failed)2022-06-01T19:54:38ZYue Wangyue.wang@iws.uni-stuttgart.detest_1pnc_maxwellstefan_tpfa (Failed)<!--
This form is for bug reports ONLY!
If you're looking for help check out the [readme](/README.md).
-->
**Bug report**
The test_1pnc_maxwellstefan_tpfa needs 20 steps on my laptop, but the reference is compared with the 19th output ...<!--
This form is for bug reports ONLY!
If you're looking for help check out the [readme](/README.md).
-->
**Bug report**
The test_1pnc_maxwellstefan_tpfa needs 20 steps on my laptop, but the reference is compared with the 19th output in makefile. After I changed compared output in makefile, there is still a small discrepancy leading to failure.
**Environment**:
- Dune version: 2.8
- DuMux version: release/3.5
- OS Version: macOS 11.6.5
- Compiler Version: gcc 11.3.0
- Others:
Output
```
ctest -R test_1pnc_maxwellstefan_tpfa --rerun-failed --output-on-failure
Test project /Users/ouetsu/dumuxday/dumux/build-cmake
Start 383: test_1pnc_maxwellstefan_tpfa
1/1 Test #383: test_1pnc_maxwellstefan_tpfa .....***Failed 1.75 sec
/Users/ouetsu/dumuxday/dumux/build-cmake/test/porousmediumflow/1pnc/1p3c/test_1pnc_maxwellstefan_tpfa-00020.vtu
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Reading parameters from file params.input.
Computed bounding box tree with 1799 nodes for 900 grid entites in 0.000222 seconds.
problem uses mole fractions
-- Using the default temperature of 293.15 in the entire domain. Overload temperatureAtPos() in your spatial params class to define a custom temperature field.Or provide the preferred domain temperature via the SpatialParams.Temperature parameter.
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.013 seconds.
Colored 900 elements with 7 colors in 0.000518 seconds.
Newton solver configured with the following options and parameters:
-- Newton.EnableShiftCriterion = true (relative shift convergence criterion)
-- Newton.MaxRelativeShift = 1e-11
-- Newton.MinSteps = 2
-- Newton.MaxSteps = 18
-- Newton.TargetSteps = 10
-- Newton.RetryTimeStepReductionFactor = 0.5
-- Newton.MaxTimeStepDivisions = 10
Newton iteration 1 done, maximum relative shift = 1.2000e-02
Newton iteration 2 done, maximum relative shift = 6.2859e-03
Newton iteration 3 done, maximum relative shift = 3.8102e-06
Newton iteration 4 done, maximum relative shift = 1.2834e-11
Newton iteration 5 done, maximum relative shift = 1.7347e-16
Assemble/solve/update time: 0.034(56.20%)/0.026(43.60%)/0.00012(0.20%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.014 seconds.
[ 0%] Time step 1 done in 0.06 seconds. Wall clock time: 0.07426, time: 1, time step size: 1
Newton iteration 1 done, maximum relative shift = 2.1265e-02
Newton iteration 2 done, maximum relative shift = 8.3938e-05
Newton iteration 3 done, maximum relative shift = 6.9125e-09
Newton iteration 4 done, maximum relative shift = 7.0832e-14
Assemble/solve/update time: 0.015(44.14%)/0.019(55.68%)/6.1e-05(0.18%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0092 seconds.
[ 0%] Time step 2 done in 0.049 seconds. Wall clock time: 0.1179, time: 2.4167, time step size: 1.4167
Newton iteration 1 done, maximum relative shift = 2.4593e-02
Newton iteration 2 done, maximum relative shift = 1.4577e-04
Newton iteration 3 done, maximum relative shift = 2.1208e-08
Newton iteration 4 done, maximum relative shift = 4.2510e-13
Assemble/solve/update time: 0.014(45.79%)/0.016(54.05%)/4.8e-05(0.16%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0092 seconds.
[ 0%] Time step 3 done in 0.04 seconds. Wall clock time: 0.1575, time: 4.5417, time step size: 2.125
Newton iteration 1 done, maximum relative shift = 2.6520e-02
Newton iteration 2 done, maximum relative shift = 2.1205e-04
Newton iteration 3 done, maximum relative shift = 4.0424e-08
Newton iteration 4 done, maximum relative shift = 9.3259e-14
Assemble/solve/update time: 0.013(43.73%)/0.016(56.03%)/6.8e-05(0.23%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0089 seconds.
[ 0%] Time step 4 done in 0.039 seconds. Wall clock time: 0.19582, time: 7.7292, time step size: 3.1875
Newton iteration 1 done, maximum relative shift = 2.6662e-02
Newton iteration 2 done, maximum relative shift = 2.6987e-04
Newton iteration 3 done, maximum relative shift = 3.8616e-08
Newton iteration 4 done, maximum relative shift = 1.3961e-13
Assemble/solve/update time: 0.012(41.74%)/0.017(57.99%)/7.9e-05(0.27%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0094 seconds.
[ 0%] Time step 5 done in 0.038 seconds. Wall clock time: 0.2344, time: 12.51, time step size: 4.7812
Newton iteration 1 done, maximum relative shift = 2.5129e-02
Newton iteration 2 done, maximum relative shift = 3.2645e-04
Newton iteration 3 done, maximum relative shift = 3.8414e-08
Newton iteration 4 done, maximum relative shift = 2.4670e-12
Assemble/solve/update time: 0.012(44.47%)/0.015(55.35%)/4.9e-05(0.18%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.009 seconds.
[ 1%] Time step 6 done in 0.037 seconds. Wall clock time: 0.27058, time: 19.682, time step size: 7.1719
Newton iteration 1 done, maximum relative shift = 2.2381e-02
Newton iteration 2 done, maximum relative shift = 3.3690e-04
Newton iteration 3 done, maximum relative shift = 7.9237e-08
Newton iteration 4 done, maximum relative shift = 2.3762e-12
Assemble/solve/update time: 0.012(45.95%)/0.014(53.87%)/4.7e-05(0.18%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0088 seconds.
[ 1%] Time step 7 done in 0.036 seconds. Wall clock time: 0.3059, time: 30.44, time step size: 10.758
Newton iteration 1 done, maximum relative shift = 2.3015e-02
Newton iteration 2 done, maximum relative shift = 3.0702e-04
Newton iteration 3 done, maximum relative shift = 9.6664e-08
Newton iteration 4 done, maximum relative shift = 1.0971e-11
Newton iteration 5 done, maximum relative shift = 1.1657e-15
Assemble/solve/update time: 0.015(41.69%)/0.021(57.99%)/0.00011(0.32%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0088 seconds.
[ 1%] Time step 8 done in 0.045 seconds. Wall clock time: 0.35098, time: 46.577, time step size: 16.137
Newton iteration 1 done, maximum relative shift = 2.3471e-02
Newton iteration 2 done, maximum relative shift = 2.3345e-04
Newton iteration 3 done, maximum relative shift = 6.3069e-08
Newton iteration 4 done, maximum relative shift = 1.1634e-11
Newton iteration 5 done, maximum relative shift = 9.4369e-16
Assemble/solve/update time: 0.015(43.41%)/0.019(56.41%)/6.1e-05(0.18%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.01 seconds.
[ 2%] Time step 9 done in 0.043 seconds. Wall clock time: 0.39514, time: 69.437, time step size: 22.86
Newton iteration 1 done, maximum relative shift = 2.2485e-02
Newton iteration 2 done, maximum relative shift = 1.8337e-04
Newton iteration 3 done, maximum relative shift = 4.9848e-08
Newton iteration 4 done, maximum relative shift = 7.6620e-12
Assemble/solve/update time: 0.012(40.34%)/0.017(59.44%)/6.4e-05(0.22%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0097 seconds.
[ 3%] Time step 10 done in 0.039 seconds. Wall clock time: 0.43413, time: 101.82, time step size: 32.385
Newton iteration 1 done, maximum relative shift = 2.2842e-02
Newton iteration 2 done, maximum relative shift = 1.7489e-04
Newton iteration 3 done, maximum relative shift = 5.3192e-08
Newton iteration 4 done, maximum relative shift = 2.1477e-13
Assemble/solve/update time: 0.012(44.81%)/0.015(54.88%)/8.6e-05(0.31%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0092 seconds.
[ 4%] Time step 11 done in 0.037 seconds. Wall clock time: 0.47081, time: 150.4, time step size: 48.578
Newton iteration 1 done, maximum relative shift = 2.3759e-02
Newton iteration 2 done, maximum relative shift = 1.7493e-04
Newton iteration 3 done, maximum relative shift = 5.4479e-08
Newton iteration 4 done, maximum relative shift = 2.9345e-13
Assemble/solve/update time: 0.012(43.70%)/0.015(55.89%)/0.00011(0.41%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0089 seconds.
[ 6%] Time step 12 done in 0.037 seconds. Wall clock time: 0.50748, time: 223.27, time step size: 72.867
Newton iteration 1 done, maximum relative shift = 2.3978e-02
Newton iteration 2 done, maximum relative shift = 1.8186e-04
Newton iteration 3 done, maximum relative shift = 5.9748e-08
Newton iteration 4 done, maximum relative shift = 3.3276e-13
Assemble/solve/update time: 0.012(40.62%)/0.018(59.11%)/8.2e-05(0.27%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0089 seconds.
[ 9%] Time step 13 done in 0.039 seconds. Wall clock time: 0.54644, time: 332.57, time step size: 109.3
Newton iteration 1 done, maximum relative shift = 2.4229e-02
Newton iteration 2 done, maximum relative shift = 1.9660e-04
Newton iteration 3 done, maximum relative shift = 6.2956e-08
Newton iteration 4 done, maximum relative shift = 7.8290e-13
Assemble/solve/update time: 0.012(43.12%)/0.015(56.60%)/7.8e-05(0.29%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0094 seconds.
[ 14%] Time step 14 done in 0.036 seconds. Wall clock time: 0.58331, time: 496.52, time step size: 163.95
Newton iteration 1 done, maximum relative shift = 2.4639e-02
Newton iteration 2 done, maximum relative shift = 2.2045e-04
Newton iteration 3 done, maximum relative shift = 8.7346e-08
Newton iteration 4 done, maximum relative shift = 1.3128e-12
Assemble/solve/update time: 0.013(39.48%)/0.02(60.35%)/5.6e-05(0.17%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0091 seconds.
[ 21%] Time step 15 done in 0.042 seconds. Wall clock time: 0.62524, time: 742.45, time step size: 245.93
Newton iteration 1 done, maximum relative shift = 2.4849e-02
Newton iteration 2 done, maximum relative shift = 2.6070e-04
Newton iteration 3 done, maximum relative shift = 1.5927e-07
Newton iteration 4 done, maximum relative shift = 4.2347e-11
Newton iteration 5 done, maximum relative shift = 1.5543e-15
Assemble/solve/update time: 0.017(42.04%)/0.023(57.71%)/0.0001(0.25%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0096 seconds.
[ 31%] Time step 16 done in 0.049 seconds. Wall clock time: 0.67486, time: 1111.3, time step size: 368.89
Newton iteration 1 done, maximum relative shift = 2.4659e-02
Newton iteration 2 done, maximum relative shift = 3.1316e-04
Newton iteration 3 done, maximum relative shift = 2.1819e-07
Newton iteration 4 done, maximum relative shift = 8.1444e-11
Newton iteration 5 done, maximum relative shift = 2.7649e-15
Assemble/solve/update time: 0.016(36.62%)/0.027(63.20%)/7.8e-05(0.18%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.01 seconds.
[ 45%] Time step 17 done in 0.053 seconds. Wall clock time: 0.72813, time: 1633.9, time step size: 522.6
Newton iteration 1 done, maximum relative shift = 2.6992e-02
Newton iteration 2 done, maximum relative shift = 3.3205e-04
Newton iteration 3 done, maximum relative shift = 4.3039e-07
Newton iteration 4 done, maximum relative shift = 1.6188e-11
Newton iteration 5 done, maximum relative shift = 3.7192e-15
Assemble/solve/update time: 0.016(40.42%)/0.024(59.43%)/6.2e-05(0.15%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0095 seconds.
[ 66%] Time step 18 done in 0.051 seconds. Wall clock time: 0.77863, time: 2374.3, time step size: 740.34
Newton iteration 1 done, maximum relative shift = 3.2737e-02
Newton iteration 2 done, maximum relative shift = 2.8143e-04
Newton iteration 3 done, maximum relative shift = 2.3822e-07
Newton iteration 4 done, maximum relative shift = 4.4269e-11
Newton iteration 5 done, maximum relative shift = 4.0246e-15
Assemble/solve/update time: 0.016(37.61%)/0.026(62.25%)/5.9e-05(0.14%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0094 seconds.
[ 95%] Time step 19 done in 0.052 seconds. Wall clock time: 0.83014, time: 3423.1, time step size: 1048.8
Newton iteration 1 done, maximum relative shift = 5.3190e-03
Newton iteration 2 done, maximum relative shift = 2.0091e-06
Newton iteration 3 done, maximum relative shift = 4.3137e-10
Newton iteration 4 done, maximum relative shift = 1.9984e-15
Assemble/solve/update time: 0.013(43.82%)/0.017(56.01%)/5.1e-05(0.17%)
Writing output for problem "test_1pnc_maxwellstefan_tpfa". Took 0.0094 seconds.
[100%] Time step 20 done in 0.04 seconds. Wall clock time: 0.87, time: 3600, time step size: 176.9
Simulation took 0.87 seconds on 1 processes.
The cumulative CPU time was 0.87 seconds.
Forty-two. I checked it very thoroughly, and that quite definitely is the answer. I think the problem, to be quite honest with you, is that you've never actually known what the question is.
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Fuzzy comparison...
Comparing /Users/ouetsu/dumuxday/dumux/test/references/test_1pnc_maxwellstefan_tpfa-reference.vtu and /Users/ouetsu/dumuxday/dumux/build-cmake/test/porousmediumflow/1pnc/1p3c/test_1pnc_maxwellstefan_tpfa-00020.vtu
... with a maximum relative error of 0.01 and a maximum absolute error of 1.5e-07*max_abs_parameter_value.
Data differs in parameter: delp
Difference is too large: 1.54% -> between: -0.000176918 and -0.000174189 Info for delp: max_abs_parameter_value=0.0211596 and min_abs_parameter_value=0.000174189.
Data differs in parameter: velocity_Gas (m/s)_0
Difference is too large: 1.28% -> between: 6.40399e-06 and 6.32196e-06 Info for velocity_Gas (m/s)_0: max_abs_parameter_value=6.44928e-06 and min_abs_parameter_value=2.75056e-07.
Fuzzy comparison done (not equal)
0% tests passed, 1 tests failed out of 1
Label Time Summary:
1pnc = 1.75 sec*proc (1 test)
porousmediumflow = 1.75 sec*proc (1 test)
Total Test time (real) = 1.96 sec
The following tests FAILED:
383 - test_1pnc_maxwellstefan_tpfa (Failed)
Errors while running CTest
```3.5Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1083[test] Gridmanager test fails with Dune `master`2021-10-06T09:31:09ZMathis Kelm[test] Gridmanager test fails with Dune `master`Recently the gridmanager test `test_gridmanager_dgf_ug_parallel` has been failing when run with Dune `master` through CI. Discrepancies appear to include element marker assignments, see the output below. Is this a core issue with our tes...Recently the gridmanager test `test_gridmanager_dgf_ug_parallel` has been failing when run with Dune `master` through CI. Discrepancies appear to include element marker assignments, see the output below. Is this a core issue with our test or just some runtime property that should not be tested (in this manner).
```
Rank 0: Reading parameters from file test_gridmanager_dgf.input.
Rank 1: Reading parameters from file test_gridmanager_dgf.input.
UGGridParameterBlock: Parameter 'closure' not specified, using default: 'GREEN'.
UGGridParameterBlock: Parameter 'copies' not specified, using default: 'NO'.
UGGridParameterBlock: Parameter 'closure' not specified, using default: 'GREEN'.
UGGridParameterBlock: Parameter 'copies' not specified, using default: 'NO'.
UGGridParameterBlock: Parameter 'closure' not specified, using default: 'GREEN'.
UGGridParameterBlock: Parameter 'copies' not specified, using default: 'NO'.
UGGridParameterBlock: Parameter 'closure' not specified, using default: 'GREEN'.
UGGridParameterBlock: Parameter 'copies' not specified, using default: 'NO'.
Fuzzy comparison...
Comparing /builds/dumux-repositories/dumux/test/references/gridmanager-co2-quad-element-reference.vtu and /builds/dumux-repositories/dumux/build-cmake/test/io/gridmanager/s0002-co2_ug_parallel-element-00000.pvtu
... with a maximum relative error of 0.01 and a maximum absolute error of 1.5e-07*max_abs_parameter_value.
Sorting vtu by coordinates...
Data differs in parameter: elementMarker
Difference is too large: 100.00% -> between: 3.0 and 0.0 Info for elementMarker: max_abs_parameter_value=3.0 and min_abs_parameter_value=0.0.
Fuzzy comparison done (not equal)
Fuzzy comparison...
Comparing /builds/dumux-repositories/dumux/test/references/gridmanager-co2-quad-element-reference-refined.vtu and /builds/dumux-repositories/dumux/build-cmake/test/io/gridmanager/s0002-co2_ug_parallel-element-00001.pvtu
... with a maximum relative error of 0.01 and a maximum absolute error of 1.5e-07*max_abs_parameter_value.
Sorting vtu by coordinates...
Data differs in parameter: elementMarker
Difference is too large: 100.00% -> between: 3.0 and 0.0 Info for elementMarker: max_abs_parameter_value=3.0 and min_abs_parameter_value=0.0.
Fuzzy comparison done (not equal)
Fuzzy comparison...
Comparing /builds/dumux-repositories/dumux/test/references/gridmanager-co2-quad-vertex-reference.vtu and /builds/dumux-repositories/dumux/build-cmake/test/io/gridmanager/s0002-co2_ug_parallel-vertex-00000.pvtu
... with a maximum relative error of 0.01 and a maximum absolute error of 1.5e-07*max_abs_parameter_value.
Sorting vtu by coordinates...
Data differs in parameter: vertexData
Difference is too large: 100.00% -> between: 96.0 and 0.0 Info for vertexData: max_abs_parameter_value=3793.0 and min_abs_parameter_value=0.0.
Fuzzy comparison done (not equal)
```https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1072Failure of richards benchmark2021-08-20T18:39:45ZTimo Kochtimokoch@math.uio.noFailure of richards benchmarkThere was a spurious failure of the Richards benchmark in the CI. No such failure had been previously observed in many runs. The job log is attached [job_log](/uploads/de092059c7504c36e9b73073c68aa798/job_log)
Seems to be quite a consis...There was a spurious failure of the Richards benchmark in the CI. No such failure had been previously observed in many runs. The job log is attached [job_log](/uploads/de092059c7504c36e9b73073c68aa798/job_log)
Seems to be quite a consistent failure ~~after !2736~~ when using the new runner on sal.Timo Kochtimokoch@math.uio.noTimo Kochtimokoch@math.uio.nohttps://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1061Disable or fix Python tests in CI for release 3.42021-07-28T10:03:33ZTimo Kochtimokoch@math.uio.noDisable or fix Python tests in CI for release 3.4The new Docker images enable the Python bindings in the full container (previously untested). The Python bindings are tested if Dune >= 2.8.
However due to a configuration issue the tests currently fail to run/compile. Help is on the way...The new Docker images enable the Python bindings in the full container (previously untested). The Python bindings are tested if Dune >= 2.8.
However due to a configuration issue the tests currently fail to run/compile. Help is on the way in !2681 but this is not going to be part of 3.4. Therefore we should probably just manually disable the Python tests in the CI config on master+release/3.4. Or if the problem is solved in !2681 soon, add the fix to the current CI config.3.4https://git.iws.uni-stuttgart.de/dumux-repositories/dumux/-/issues/1034Segfault in McWorther test (currently untested)2021-08-16T12:23:18ZTimo Kochtimokoch@math.uio.noSegfault in McWorther test (currently untested)The test added in !2630 fails. Continuing discussion there.The test added in !2630 fails. Continuing discussion there.3.5Hanchuan WuHanchuan Wu