diff --git a/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokesdarcyBJ-testset_Calibration.hdf5 b/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokesdarcyBJ-testset_Calibration.hdf5 index d901c2854329e2af5071e39cd80c996b65efb654..0dff372ca9d4cbde339ec6137f31db7703e24512 100644 Binary files a/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokesdarcyBJ-testset_Calibration.hdf5 and b/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokesdarcyBJ-testset_Calibration.hdf5 differ diff --git a/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokesdarcyBJ-testset_Validation.hdf5 b/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokesdarcyBJ-testset_Validation.hdf5 index 6d518951a6465d98e8a8a34fbf87fda73665d57a..94d19badb42f291fbdae46df90d76ce2ed0cecca 100644 Binary files a/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokesdarcyBJ-testset_Validation.hdf5 and 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a/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokesdarcyER-testset_Validation.hdf5 and b/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokesdarcyER-testset_Validation.hdf5 differ diff --git a/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokespnm-testset_Calibration.hdf5 b/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokespnm-testset_Calibration.hdf5 index ae494a4b871fedab6837d5dceb2a68aa8f5a5da8..320e4c80974411516d4fc10258bd27dec3646121 100644 Binary files a/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokespnm-testset_Calibration.hdf5 and b/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokespnm-testset_Calibration.hdf5 differ diff --git a/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokespnm-testset_Validation.hdf5 b/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokespnm-testset_Validation.hdf5 index cdfdfbe5b997496b9d81c3a9961faa7e5dca41e2..672871e4760b00dc607d3c4e81c03b076c84a39c 100644 Binary files a/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokespnm-testset_Validation.hdf5 and b/BayesValidRox/tests/PA-A/data/ValidationSets/ExpDesign_ffpm-stokespnm-testset_Validation.hdf5 differ diff --git a/BayesValidRox/tests/PA-A/data/stokesDataCalib.csv b/BayesValidRox/tests/PA-A/data/stokesDataCalib.csv index 2f8414f6a1a381f7c533653c59e38a4af8310549..6b214b573f9ed2b4e6a423fb8f6ce854958c9ced 100644 --- a/BayesValidRox/tests/PA-A/data/stokesDataCalib.csv +++ b/BayesValidRox/tests/PA-A/data/stokesDataCalib.csv @@ -1,11 +1,11 @@ Point ID,velocity [m/s],p -213477,2.57883866598235E-05,0.116039283573627 -213877,4.03561352036864E-05,0.136295005679131 -289534,5.41017712178103E-05,0.188290998339653 -291183,4.85823700532751E-05, -368496,3.37886345785382E-05, -369920,3.38895765037963E-05, -411549,0.001614250563756, -412975,0.001768166414245, -456893,0.002568130149789, -464705,0.000381386774506, +213477,2.60862474339738E-05,0.153936818242073 +213877,4.08332675423286E-05,0.135626003146172 +289534,5.47471971190026E-05,0.187374994158745 +291183,4.91589179791319E-05, +368496,4.88185698058537E-05, +369920,0.000209105871187, +411549,0.001589227002128, +412975,0.001741280849191, +456893,0.002554260173257, +464705,0.000380716440442, diff --git a/BayesValidRox/tests/PA-A/data/stokesDataValid.csv b/BayesValidRox/tests/PA-A/data/stokesDataValid.csv index e77089959db79df5c4e0739a0d600e56e92241eb..8f8c1324598ead28939ce55225d8acaa4f2ec7cf 100644 --- a/BayesValidRox/tests/PA-A/data/stokesDataValid.csv +++ b/BayesValidRox/tests/PA-A/data/stokesDataValid.csv @@ -1,11 +1,11 @@ Point ID,velocity [m/s],p -211000,3.86303112536121E-05,0.105349339544773 -213679,3.64938913543687E-05,0.041419301182032 -288307,5.1365454078049E-05, -290985,3.39077868937481E-05, -369720,4.05229469814049E-05, -371144,4.242575790761E-05, -409300,0.000139596048163, -412777,0.001731470921816, -456693,0.00241720845829, -458121,0.002620647168426, +211000,3.90864178247333E-05,0.139726758003235 +213679,3.69242190129843E-05,0.040632400661707 +288307,5.19731969987749E-05, +290985,3.43033728160247E-05, +369720,0.000197271052458, +371144,0.000214633941148, +409300,0.000137196610132, +412777,0.001705360086791, +456693,0.002403015822414, +458121,0.002606966843337, diff --git a/BayesValidRox/tests/PA-A/ffpm_validation_stokesdarcy.py b/BayesValidRox/tests/PA-A/ffpm_validation_stokesdarcy.py index 81cb159f1a07c6f53f60fc675a6c5159966d43bb..44632ea361f3c799ee6f6659479c1a08edb6a922 100644 --- a/BayesValidRox/tests/PA-A/ffpm_validation_stokesdarcy.py +++ b/BayesValidRox/tests/PA-A/ffpm_validation_stokesdarcy.py @@ -71,7 +71,7 @@ def run(params, errorPerc=0.05, couplingcond='BJ', PCEEDMethod='normal'): #============ COMPUTATIONAL MODEL ================ #===================================================== Model = PyLinkForwardModel() - # Model.nrCPUs = 4 #8 + Model.nrCPUs = 4 #8 Model.Type = 'PyLink' Model.Name = 'ffpm-stokesdarcy'+couplingcond Model.InputFile = 'stokesdarcy_'+couplingcond+'_params.input' @@ -458,7 +458,7 @@ def run(params, errorPerc=0.05, couplingcond='BJ', PCEEDMethod='normal'): BayesOptsValid.Samples = None #BayesCalib.Posterior_df # BayesOptsValid.BootstrapNoise = BootstrapNoise #0.0005 BayesOptsValid.perturbedData = perturbedData - + # Bayesian cross validation # BayesOptsValid.BayesLOOCV = True diff --git a/BayesValidRox/tests/PA-A/models/stokes/ffpm_stokes_p_final.csv b/BayesValidRox/tests/PA-A/models/stokes/ffpm_stokes_p_final.csv index 43e99d2d8d5326ca0fb73f8d24ca46ec950ae383..932c3ca0810b151721858ea255d2698385a2d240 100644 --- a/BayesValidRox/tests/PA-A/models/stokes/ffpm_stokes_p_final.csv +++ b/BayesValidRox/tests/PA-A/models/stokes/ffpm_stokes_p_final.csv @@ -1,5 +1,5 @@ -1.160392835736274719e-01 -1.053493395447731018e-01 -1.362950056791305542e-01 -4.141930118203163147e-02 -1.882909983396530151e-01 +1.539368182420730591e-01 +1.397267580032348633e-01 +1.356260031461715698e-01 +4.063240066170692444e-02 +1.873749941587448120e-01 diff --git a/BayesValidRox/tests/PA-A/models/stokes/ffpm_stokes_velocity_final.csv b/BayesValidRox/tests/PA-A/models/stokes/ffpm_stokes_velocity_final.csv index 6aa3385b9a255abdd05f8c47c2b4f713b87edee1..6a01f6874e98d8e69cb18c6c56eba0a1f852d66a 100644 --- a/BayesValidRox/tests/PA-A/models/stokes/ffpm_stokes_velocity_final.csv +++ b/BayesValidRox/tests/PA-A/models/stokes/ffpm_stokes_velocity_final.csv @@ -1,20 +1,20 @@ -3.165179471594783359e-05,2.214644077070730102e-05,0.000000000000000000e+00 -1.540285314504784563e-05,-2.068315743566863287e-05,0.000000000000000000e+00 -3.362981353987131946e-05,-1.417179408042436447e-05,0.000000000000000000e+00 -4.025765203667575531e-05,2.817641047427767159e-06,0.000000000000000000e+00 -5.127534863766571992e-05,3.041133790215316151e-06,0.000000000000000000e+00 -4.439944152883686129e-05,3.091425627168941205e-05,0.000000000000000000e+00 -1.381734849442392451e-05,-3.096480086510291666e-05,0.000000000000000000e+00 -4.274039184194417353e-05,-2.309773982861605300e-05,0.000000000000000000e+00 -4.457191560288683392e-06,-3.349336158221328033e-05,0.000000000000000000e+00 -3.002016947657205892e-05,-2.721945364359175130e-05,0.000000000000000000e+00 -3.381359079979119261e-05,2.268143035819367029e-06,0.000000000000000000e+00 -3.237415196805936454e-05,2.742005139280608581e-05,0.000000000000000000e+00 -7.822449697414413095e-05,-1.156200014520436525e-04,0.000000000000000000e+00 -1.610659994184970856e-03,-1.076069966075010598e-04,0.000000000000000000e+00 -1.731469994410872459e-03,1.792079956430825405e-06,0.000000000000000000e+00 -1.767599955201148987e-03,4.475340028875507414e-05,0.000000000000000000e+00 -2.389380009844899178e-03,-3.657320048660039902e-04,0.000000000000000000e+00 -2.568129915744066238e-03,1.096409960155142471e-06,0.000000000000000000e+00 -2.620619954541325569e-03,1.194299966300604865e-05,0.000000000000000000e+00 -1.138989973696880043e-04,-3.639819915406405926e-04,0.000000000000000000e+00 +3.202268216196733452e-05,2.241195853831725454e-05,0.000000000000000000e+00 +1.557605284475656673e-05,-2.092555573847095559e-05,0.000000000000000000e+00 +3.402575664969952063e-05,-1.434035683427236415e-05,0.000000000000000000e+00 +4.073360910728440407e-05,2.851109832739640807e-06,0.000000000000000000e+00 +5.188201314228896299e-05,3.077323281167878774e-06,0.000000000000000000e+00 +4.492731412085058593e-05,3.128565227501810611e-05,0.000000000000000000e+00 +1.396722056349193304e-05,-3.133110493241421379e-05,0.000000000000000000e+00 +4.324567592648483755e-05,-2.337543006108045579e-05,0.000000000000000000e+00 +1.222493061471671347e-05,-4.726313393496432702e-05,0.000000000000000000e+00 +1.934100452622503075e-04,-3.883841564259957191e-05,0.000000000000000000e+00 +2.090836450760191756e-04,3.048725406053220954e-06,0.000000000000000000e+00 +2.114463216486700547e-04,3.685351752557436411e-05,0.000000000000000000e+00 +7.515930337831377983e-05,-1.147779985330998898e-04,0.000000000000000000e+00 +1.585450023412704468e-03,-1.095019979402422905e-04,0.000000000000000000e+00 +1.705360016785562038e-03,-4.886409783466660883e-07,0.000000000000000000e+00 +1.740740030072629452e-03,4.339520091889426112e-05,0.000000000000000000e+00 +2.374160103499889374e-03,-3.712800098583102226e-04,0.000000000000000000e+00 +2.554259961470961571e-03,1.040149982145521790e-06,0.000000000000000000e+00 +2.606939990073442459e-03,1.183259973913663998e-05,0.000000000000000000e+00 +1.092419988708570600e-04,-3.647069970611482859e-04,0.000000000000000000e+00 diff --git a/BayesValidRox/tests/PA-A/models/stokes/log.out b/BayesValidRox/tests/PA-A/models/stokes/log.out index b6e89c7c3c4397bccd48e96eeedddaabd4479a22..ffc5f62d70b42dd57a7165268da3fb7a3be7544d 100644 --- a/BayesValidRox/tests/PA-A/models/stokes/log.out +++ b/BayesValidRox/tests/PA-A/models/stokes/log.out @@ -3,7 +3,7 @@ You idiot! You signed the order to destroy Earth! - Douglas Adams, HGttG Reading parameters from file stokes_params.input. -Writing output for problem "regular_2D_stokes_250_micron". Took 2.4 seconds. +Writing output for problem "regular_2D_stokes_250_micron". Took 0.92 seconds. Instantiated assembler for a stationary problem. Newton solver configured with the following options and parameters: @@ -15,18 +15,18 @@ Newton solver configured with the following options and parameters: -- Newton.RetryTimeStepReductionFactor = 0.5 -- Newton.MaxTimeStepDivisions = 10 -Assemble: r(x^k) = dS/dt + div F - q; M = grad r Solve: M deltax^k = r[K Update: x^(k+1) = x^k - deltax^k[K Newton iteration 1 done, maximum relative shift = 1.9198e-01 -Assemble: r(x^k) = dS/dt + div F - q; M = grad r Solve: M deltax^k = r[K Update: x^(k+1) = x^k - deltax^k[K Newton iteration 2 done, maximum relative shift = 1.3683e-14 -Assemble/solve/update time: 9.1(9.62%)/85(89.83%)/0.53(0.56%) -Assembly and solve took 94.7135 seconds -numFaceDofs: 991625, numCellCenterDofs: 490000, total: 1481625 -Writing output for problem "regular_2D_stokes_250_micron". Took 4.3 seconds. +Assemble: r(x^k) = dS/dt + div F - q; M = grad r Solve: M deltax^k = r[K Update: x^(k+1) = x^k - deltax^k[K Newton iteration 1 done, maximum relative shift = 1.9042e-01 +Assemble: r(x^k) = dS/dt + div F - q; M = grad r Solve: M deltax^k = r[K Update: x^(k+1) = x^k - deltax^k[K Newton iteration 2 done, maximum relative shift = 5.3846e-15 +Assemble/solve/update time: 3.7(13.32%)/24(86.02%)/0.19(0.66%) +Assembly and solve took 28.0175 seconds +numFaceDofs: 408848, numCellCenterDofs: 200704, total: 609552 +Writing output for problem "regular_2D_stokes_250_micron". Took 0.98 seconds. ################################## Fluxes: -horizontal: 0.00199998 +horizontal: 0.00200003 Adding Throat0 at: min = 0.001875 0.002875, max = 0.002125 0.002875 Adding Throat1 at: min = 0.003875 0.002875, max = 0.004125 0.002875 @@ -42,20 +42,20 @@ Adding Throat10 at: min = 0.005875 0.004875, max = 0.006125 0.004875 Adding Throat11 at: min = 0.007875 0.004875, max = 0.008125 0.004875 ################################## -Throat 0: mass flux: -1.35188e-07, area: 0.00025 mean velocity: -5.40753e-07 -Throat 1: mass flux: -2.95256e-07, area: 0.00025 mean velocity: -1.18102e-06 -Throat 2: mass flux: -3.53444e-07, area: 0.00025 mean velocity: -1.41378e-06 -Throat 3: mass flux: -2.77897e-07, area: 0.00025 mean velocity: -1.11159e-06 -Throat 4: mass flux: -1.21223e-07, area: 0.00025 mean velocity: -4.84892e-07 -Throat 5: mass flux: -3.75274e-07, area: 0.00025 mean velocity: -1.5011e-06 -Throat 6: mass flux: -4.50168e-07, area: 0.00025 mean velocity: -1.80067e-06 -Throat 7: mass flux: -3.8984e-07, area: 0.00025 mean velocity: -1.55936e-06 -Throat 8: mass flux: -2.134e-07, area: 0.00025 mean velocity: -8.53599e-07 -Throat 9: mass flux: -3.15412e-06, area: 0.00025 mean velocity: -1.26165e-05 -Throat 10: mass flux: -3.43424e-06, area: 0.00025 mean velocity: -1.37369e-05 -Throat 11: mass flux: -3.48838e-06, area: 0.00025 mean velocity: -1.39535e-05 -Simulation took 123.168 seconds on 1 processes. -The cumulative CPU time was 123.168 seconds. +Throat 0: mass flux: -1.04486e-05, area: 0.00025 mean velocity: -4.17943e-05 +Throat 1: mass flux: -7.15223e-06, area: 0.00025 mean velocity: -2.86089e-05 +Throat 2: mass flux: 1.42857e-06, area: 0.00025 mean velocity: 5.71429e-06 +Throat 3: mass flux: 1.12017e-05, area: 0.00025 mean velocity: 4.4807e-05 +Throat 4: mass flux: -1.56406e-05, area: 0.00025 mean velocity: -6.25624e-05 +Throat 5: mass flux: -1.16572e-05, area: 0.00025 mean velocity: -4.66289e-05 +Throat 6: mass flux: 1.54027e-06, area: 0.00025 mean velocity: 6.16109e-06 +Throat 7: mass flux: 1.56596e-05, area: 0.00025 mean velocity: 6.26386e-05 +Throat 8: mass flux: -2.28369e-05, area: 0.00025 mean velocity: -9.13476e-05 +Throat 9: mass flux: -1.86042e-05, area: 0.00025 mean velocity: -7.44167e-05 +Throat 10: mass flux: 1.52948e-06, area: 0.00025 mean velocity: 6.11791e-06 +Throat 11: mass flux: 1.85631e-05, area: 0.00025 mean velocity: 7.42526e-05 +Simulation took 38.8996 seconds on 1 processes. +The cumulative CPU time was 38.8996 seconds. # Runtime-specified parameters used: [ Assembly ] @@ -71,7 +71,7 @@ EnableUnsymmetrizedVelocityGradient = "true" [ Grid ] CavityHeight = "0.005" CavityLength = "1.025e-2" -Cells = "1025 600" +Cells = "656 384" ChannelWidthX = "250e-6" ChannelWidthY = "250e-6" InletLength = "0.0" diff --git a/BayesValidRox/tests/PA-A/models/stokes/outFiles.zip b/BayesValidRox/tests/PA-A/models/stokes/outFiles.zip index 36b5e7117f742b471ab196cc1033ee42d495cc28..a7ecd529e847f25bdac6ba332f0809e27ba153f5 100644 Binary files a/BayesValidRox/tests/PA-A/models/stokes/outFiles.zip and b/BayesValidRox/tests/PA-A/models/stokes/outFiles.zip differ diff --git a/BayesValidRox/tests/PA-A/models/stokes/stokes_params.input b/BayesValidRox/tests/PA-A/models/stokes/stokes_params.input index 749471e4b04e06ccba28d1e3bde29c5dc6ca226f..7503bec348eb0d757e525728aaf74327c6a6c581 100644 --- a/BayesValidRox/tests/PA-A/models/stokes/stokes_params.input +++ b/BayesValidRox/tests/PA-A/models/stokes/stokes_params.input @@ -1,7 +1,7 @@ [Grid] LowerLeft = -125e-6 0 UpperRight = 0.010125 0.6e-2 -Cells = 1025 600 #1312 768 164 96 +Cells = 656 384 #1312 768 164 96 Refinement = 0 diff --git a/BayesValidRox/tests/PA-A/ref_stokesdarcy.py b/BayesValidRox/tests/PA-A/ref_stokesdarcy.py index 9bfd60dadf5cc95f22f9d6f3511bcf658dd8d8f1..24ccf98a88e35b2f37cd9a673ac7ad634e110527 100755 --- a/BayesValidRox/tests/PA-A/ref_stokesdarcy.py +++ b/BayesValidRox/tests/PA-A/ref_stokesdarcy.py @@ -28,7 +28,7 @@ from PyLink.PyLinkForwardModel import PyLinkForwardModel #===================================================== couplingcond = 'BJ' # ER or BJ Model = PyLinkForwardModel() -# Model.nrCPUs = 4 #8 +Model.nrCPUs = 3 #8 Model.Type = 'PyLink' Model.Name = 'ffpm-stokesdarcy'+couplingcond+'-testset' Model.InputFile = 'stokesdarcy_'+couplingcond+'_params.input' diff --git a/BayesValidRox/tests/PA-A/ref_stokespnm.py b/BayesValidRox/tests/PA-A/ref_stokespnm.py index c7dddf6b605bba5107ea26a825478ced82c084af..b92a0d7a3b4b7bd85035ec3ef8fb7f2914330dd1 100755 --- a/BayesValidRox/tests/PA-A/ref_stokespnm.py +++ b/BayesValidRox/tests/PA-A/ref_stokespnm.py @@ -25,7 +25,7 @@ from PyLink.PyLinkForwardModel import PyLinkForwardModel #============ COMPUTATIONAL MODEL ================ #===================================================== Model = PyLinkForwardModel() -# Model.nrCPUs = 4 +Model.nrCPUs = 4 Model.Type = 'PyLink' Model.Name = 'ffpm-stokespnm-testset' Model.InputFile = 'stokespnm_params.input' diff --git a/BayesValidRox/tests/PA-A/stokesdarcy_BJ_params.tpl.input b/BayesValidRox/tests/PA-A/stokesdarcy_BJ_params.tpl.input index eee4a9b24eb17b042f313c246871ebcae09dc1c8..4ed82c720043ecebfce14664d77e421b1ba98541 100644 --- a/BayesValidRox/tests/PA-A/stokesdarcy_BJ_params.tpl.input +++ b/BayesValidRox/tests/PA-A/stokesdarcy_BJ_params.tpl.input @@ -1,8 +1,8 @@ [Grid] Positions0 = -125e-6 0.010125 Positions1 = 0 0.6e-2 -Cells0 = 1312 #656 -Cells1 = 768 #384 +Cells0 = 656 #1312 +Cells1 = 384 #768 [Stokes.Grid] InletLength = 0.0 diff --git a/BayesValidRox/tests/PA-A/stokesdarcy_ER_params.tpl.input b/BayesValidRox/tests/PA-A/stokesdarcy_ER_params.tpl.input index 62e1f053f169e5d4b33115c893b0e758f4a11d6b..053178be5febdeeb2e2b4123fd195c6d6412c931 100644 --- a/BayesValidRox/tests/PA-A/stokesdarcy_ER_params.tpl.input +++ b/BayesValidRox/tests/PA-A/stokesdarcy_ER_params.tpl.input @@ -1,8 +1,8 @@ [Grid] Positions0 = -125e-6 0.010125 Positions1 = 0 0.6e-2 -Cells0 = 1312 #656 512 -Cells1 = 768 #384 300 +Cells0 = 656 #1312 +Cells1 = 384 #768 [Stokes.Grid] InletLength = 0.0 diff --git a/BayesValidRox/tests/PA-A/stokespnm_params.tpl.input b/BayesValidRox/tests/PA-A/stokespnm_params.tpl.input index f1fb34a4656992f68625958896f9f723162a99cb..8678175eca076f8852a82649febda524ff8a1f8d 100644 --- a/BayesValidRox/tests/PA-A/stokespnm_params.tpl.input +++ b/BayesValidRox/tests/PA-A/stokespnm_params.tpl.input @@ -1,9 +1,9 @@ [Stokes.Grid] LowerLeft = -0.000125000 0.005125 # inlet length: 0.25e-2 m UpperRight = 0.010125 0.006125 # outlet length: 0.25e-2 m, heigth channel: 1e-3 m -CellsPerThroat = 32 -Cells1 = 128 -FixedCellsBetweenThroats = 32 +CellsPerThroat = 16 +Cells1 = 64 +FixedCellsBetweenThroats = 16 Refinement = 0 [PNM.Grid]