diff --git a/docs/source/_autosummary/bayesvalidrox.surrogate_models.engine.Engine.rst b/docs/source/_autosummary/bayesvalidrox.surrogate_models.engine.Engine.rst index 21a9e34806d5b3671103d4a334fcdfd92880c1bc..00a9dcd93acecc50c3c0722ecd71d96cd116eab9 100644 --- a/docs/source/_autosummary/bayesvalidrox.surrogate_models.engine.Engine.rst +++ b/docs/source/_autosummary/bayesvalidrox.surrogate_models.engine.Engine.rst @@ -17,19 +17,11 @@ bayesvalidrox.surrogate\_models.engine.Engine .. autosummary:: ~Engine.__init__ - ~Engine.choose_next_sample - ~Engine.dual_annealing ~Engine.eval_metamodel - ~Engine.run_util_func ~Engine.start_engine - ~Engine.tradeoff_weights ~Engine.train_normal ~Engine.train_seq_design ~Engine.train_sequential - ~Engine.util_AlphOptDesign - ~Engine.util_BayesianActiveDesign - ~Engine.util_BayesianDesign - ~Engine.util_VarBasedDesign diff --git a/docs/source/_autosummary/bayesvalidrox.surrogate_models.engine.rst b/docs/source/_autosummary/bayesvalidrox.surrogate_models.engine.rst index 43998aeade22fc4feb5c04282973e72a1ae1d72e..a73ff3387b3ede34a272edb2f2b95c7730c9d2a6 100644 --- a/docs/source/_autosummary/bayesvalidrox.surrogate_models.engine.rst +++ b/docs/source/_autosummary/bayesvalidrox.surrogate_models.engine.rst @@ -9,15 +9,6 @@ bayesvalidrox.surrogate\_models.engine - .. rubric:: Functions - - .. autosummary:: - :toctree: - - hellinger_distance - logpdf - subdomain - diff --git a/docs/source/_autosummary/bayesvalidrox.surrogate_models.rst b/docs/source/_autosummary/bayesvalidrox.surrogate_models.rst index fbd49ba297a2f28c516c5818e5f844d545986446..19ea8468254de7631be7b80500ebcb44dabf033a 100644 --- a/docs/source/_autosummary/bayesvalidrox.surrogate_models.rst +++ b/docs/source/_autosummary/bayesvalidrox.surrogate_models.rst @@ -1,4 +1,4 @@ -bayesvalidrox.surrogate\_models +bayesvalidrox.surrogate\_models =============================== .. automodule:: bayesvalidrox.surrogate_models @@ -41,5 +41,6 @@ bayesvalidrox.surrogate\_models bayesvalidrox.surrogate_models.orthogonal_matching_pursuit bayesvalidrox.surrogate_models.reg_fast_ard bayesvalidrox.surrogate_models.reg_fast_laplace + bayesvalidrox.surrogate_models.sequential_design bayesvalidrox.surrogate_models.surrogate_models diff --git a/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.rst b/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.rst new file mode 100644 index 0000000000000000000000000000000000000000..85bf390ce314ff2dcc87557ffd5f13404782ca47 --- /dev/null +++ b/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.rst @@ -0,0 +1,34 @@ +bayesvalidrox.surrogate\_models.sequential\_design.SequentialDesign +=================================================================== + +.. currentmodule:: bayesvalidrox.surrogate_models.sequential_design + +.. autoclass:: SequentialDesign + :members: + :show-inheritance: + :inherited-members: + + + .. automethod:: __init__ + + + .. rubric:: Methods + + .. autosummary:: + + ~SequentialDesign.__init__ + ~SequentialDesign.choose_next_sample + ~SequentialDesign.dual_annealing + ~SequentialDesign.run_util_func + ~SequentialDesign.start_seqdesign + ~SequentialDesign.tradeoff_weights + ~SequentialDesign.util_AlphOptDesign + ~SequentialDesign.util_BayesianActiveDesign + ~SequentialDesign.util_BayesianDesign + ~SequentialDesign.util_VarBasedDesign + + + + + + \ No newline at end of file diff --git a/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.rst b/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.rst new file mode 100644 index 0000000000000000000000000000000000000000..e242998b25145fd1d0320e10f4ebc1503f00a302 --- /dev/null +++ b/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.rst @@ -0,0 +1,6 @@ +bayesvalidrox.surrogate\_models.sequential\_design.hellinger\_distance +====================================================================== + +.. currentmodule:: bayesvalidrox.surrogate_models.sequential_design + +.. autofunction:: hellinger_distance \ No newline at end of file diff --git a/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.rst b/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.rst new file mode 100644 index 0000000000000000000000000000000000000000..124f9a6d588f053034144a510db677ae96b91da6 --- /dev/null +++ b/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.rst @@ -0,0 +1,6 @@ +bayesvalidrox.surrogate\_models.sequential\_design.logpdf +========================================================= + +.. currentmodule:: bayesvalidrox.surrogate_models.sequential_design + +.. autofunction:: logpdf \ No newline at end of file diff --git a/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.rst b/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.rst new file mode 100644 index 0000000000000000000000000000000000000000..2e13f6766e5c85e70fae2f7087baaf350a38b095 --- /dev/null +++ b/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.rst @@ -0,0 +1,40 @@ +bayesvalidrox.surrogate\_models.sequential\_design +================================================== + +.. automodule:: bayesvalidrox.surrogate_models.sequential_design + + + + + + + + .. rubric:: Functions + + .. autosummary:: + :toctree: + + hellinger_distance + logpdf + subdomain + + + + + + .. rubric:: Classes + + .. autosummary:: + :toctree: + :template: custom-class-template.rst + + SequentialDesign + + + + + + + + + diff --git a/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.rst b/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.rst new file mode 100644 index 0000000000000000000000000000000000000000..abef419d34e8f934f2fff5d6d4573313336c9ca6 --- /dev/null +++ b/docs/source/_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.rst @@ -0,0 +1,6 @@ +bayesvalidrox.surrogate\_models.sequential\_design.subdomain +============================================================ + +.. currentmodule:: bayesvalidrox.surrogate_models.sequential_design + +.. autofunction:: subdomain \ No newline at end of file diff --git a/docs/source/bmc_description.rst b/docs/source/bmc_description.rst index b3eaf86c2ca702ffa9781de4f6f3224f87c479fb..3ebd9d5250e3aee50bd1dd9fe9c9fb6845be6d15 100644 --- a/docs/source/bmc_description.rst +++ b/docs/source/bmc_description.rst @@ -18,5 +18,66 @@ Bayesian multi-model comparison Example ======= To perform model comparison, we first need to define the set of competing models. -For this, we create two additional models based on the example model from :any:`model_description`. -The first of these models \ No newline at end of file +For this, we create an additional model in the file ``model2.py`` based on the example model from :any:`model_description`. + +>>> def model2(samples, x_values): +>>> poly = samples[0]*np.power(x_values, 3) +>>> outputs = {'A': poly, 'x_values': x_values} +>>> return outputs + +Then we can build another surrogate for this model, following the same code as for the surrogate in :any:`surrogate_description`. + +>>> Model2 = PyLinkForwardModel() +>>> Model2.link_type = 'Function' +>>> Model2.py_file = 'model2' +>>> Model2.name = 'model2' +>>> Model2.Output.names = ['A'] +>>> Model2.func_args = {'x_values': x_values} +>>> Model2.store = False + +>>> MetaMod2 = MetaModel(Inputs) +>>> MetaMod2.meta_model_type = 'aPCE' +>>> MetaMod2.pce_reg_method = 'FastARD' +>>> MetaMod2.pce_deg = 3 +>>> MetaMod2.pce_q_norm = 1 + +>>> ExpDesign2 = ExpDesigns(Inputs) +>>> ExpDesign2.n_init_samples = 30 +>>> ExpDesign2.sampling_method = 'random' + +>>> Engine_2 = Engine(MetaMod2, Model2, ExpDesign2) +>>> Engine_2.train_normal() + +To perform model comparison we use the class :any:`bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison`. + +>>> from bayesvalidrox import BayesModelComparison` + +We collect the engines that should be compared in a dictionary, and assign them names. + +>>> meta_models = { +>>> "linear": Engine_, +>>> "degthree": Engine_2 +>>> } + +Then we create an object of class ``BayesModelComparison``. + +>>> BayesOpts = BayesModelComparison() + +As the comparison uses the class :any:`bayesvalidrox.bayes_inference.bayes_inference.BayesInference`, we can also set the properties for this class as well. +These are collected in a dictionary and given to the function calls that perform the model comparison. +In this example we use the following settings. + +>>> opts_bootstrap = { +>>> "bootstrap": True, +>>> "n_samples": 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33dc7d173f129329f4e812774fb1f08c1477a449..39a43554367329452939a1ea7af91b40a8f37bb5 100644 Binary files a/public/.doctrees/bmc_description.doctree and b/public/.doctrees/bmc_description.doctree differ diff --git a/public/.doctrees/environment.pickle b/public/.doctrees/environment.pickle index 7b0eddb6c5099c6efa5d790a9028abd32a508451..8e2d9dff4dc84f1ba9465c97db6f1c82f63a406d 100644 Binary files a/public/.doctrees/environment.pickle and b/public/.doctrees/environment.pickle differ diff --git a/public/_autosummary/bayesvalidrox.bayes_inference.bayes_inference.BayesInference.html b/public/_autosummary/bayesvalidrox.bayes_inference.bayes_inference.BayesInference.html index d6ae664d3a234e92f0775a6cb50dab94113152e6..d61827eafe17061d12a603ed7dba62c059d62745 100644 --- a/public/_autosummary/bayesvalidrox.bayes_inference.bayes_inference.BayesInference.html +++ b/public/_autosummary/bayesvalidrox.bayes_inference.bayes_inference.BayesInference.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" 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href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.bayes_inference.bayes_inference.html b/public/_autosummary/bayesvalidrox.bayes_inference.bayes_inference.html index be2a80de6a8e7f00e136d7bcf354bd2e691c833a..1d8d9fe8fdfa62b6b74d71613a75c40b715d4b22 100644 --- a/public/_autosummary/bayesvalidrox.bayes_inference.bayes_inference.html +++ b/public/_autosummary/bayesvalidrox.bayes_inference.bayes_inference.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison.html b/public/_autosummary/bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison.html index 8c36c6beaa669b19afc29e45796a9315b7896101..eacbefdddc7cf00e5726f4c5b283eb258d1ce68b 100644 --- a/public/_autosummary/bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison.html +++ b/public/_autosummary/bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.bayes_inference.bayes_model_comparison.html b/public/_autosummary/bayesvalidrox.bayes_inference.bayes_model_comparison.html index 0180e21c689d5ba3b4402ef9c463fbe1d7f0ea5f..33dd94b0b9282b5d0b233c37844401a329d4947e 100644 --- a/public/_autosummary/bayesvalidrox.bayes_inference.bayes_model_comparison.html +++ b/public/_autosummary/bayesvalidrox.bayes_inference.bayes_model_comparison.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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b/public/_autosummary/bayesvalidrox.bayes_inference.discrepancy.Discrepancy.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.bayes_inference.discrepancy.html b/public/_autosummary/bayesvalidrox.bayes_inference.discrepancy.html index e21d3a79bb7e48b5b2217b9d0213985868e04a97..40faddf214d1034fab8b2cb37917f4a74fb12e2d 100644 --- a/public/_autosummary/bayesvalidrox.bayes_inference.discrepancy.html +++ b/public/_autosummary/bayesvalidrox.bayes_inference.discrepancy.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.bayes_inference.html b/public/_autosummary/bayesvalidrox.bayes_inference.html index 11f98117146bca7bfacdc90d54d6de368db50aa8..5d3e8a988e4d7823f0e1bd0aaa600ec8c9f4d3cd 100644 --- a/public/_autosummary/bayesvalidrox.bayes_inference.html +++ b/public/_autosummary/bayesvalidrox.bayes_inference.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference 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</ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" 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b/public/_autosummary/bayesvalidrox.post_processing.post_processing.PostProcessing.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference 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</li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" 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</ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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-239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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b/public/_autosummary/bayesvalidrox.surrogate_models.apoly_construction.apoly_construction.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a 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+239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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b/public/_autosummary/bayesvalidrox.surrogate_models.bayes_linear.BayesianLinearRegression.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.bayes_linear.EBLinearRegression.html b/public/_autosummary/bayesvalidrox.surrogate_models.bayes_linear.EBLinearRegression.html index e5b8b3aaf10a2bd4c88f464582a0f1e5af901086..ebc86c08711ce3193a4b105f49f6b7e73059d9bd 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.bayes_linear.EBLinearRegression.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.bayes_linear.EBLinearRegression.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.bayes_linear.VBLinearRegression.html b/public/_autosummary/bayesvalidrox.surrogate_models.bayes_linear.VBLinearRegression.html index 49002d5f3ad44f76b604b9d87b280bf30604a146..c21f568b02eaef7f640e906ec45051478b108e4f 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.bayes_linear.VBLinearRegression.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.bayes_linear.VBLinearRegression.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference 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b/public/_autosummary/bayesvalidrox.surrogate_models.bayes_linear.gamma_mean.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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charset="utf-8"/> <meta name="viewport" content="width=device-width,initial-scale=1"/> <meta name="color-scheme" content="light dark"><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" /> -<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="bayesvalidrox.surrogate_models.eval_rec_rule" href="bayesvalidrox.surrogate_models.eval_rec_rule.html" /><link rel="prev" title="bayesvalidrox.surrogate_models.engine.subdomain" href="bayesvalidrox.surrogate_models.engine.subdomain.html" /> +<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="bayesvalidrox.surrogate_models.eval_rec_rule" href="bayesvalidrox.surrogate_models.eval_rec_rule.html" /><link rel="prev" title="bayesvalidrox.surrogate_models.engine" href="bayesvalidrox.surrogate_models.engine.html" /> <!-- Generated with Sphinx 7.3.7 and 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href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5 current current-page"><a class="current reference internal" href="#">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label 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class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> @@ -354,24 +358,12 @@ <tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.__init__" title="bayesvalidrox.surrogate_models.engine.Engine.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(MetaMod, Model, ExpDes)</p></td> <td><p></p></td> </tr> -<tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.choose_next_sample" title="bayesvalidrox.surrogate_models.engine.Engine.choose_next_sample"><code class="xref py py-obj docutils literal notranslate"><span class="pre">choose_next_sample</span></code></a>([sigma2, n_candidates, var])</p></td> -<td><p>Runs optimal sequential design.</p></td> -</tr> -<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.dual_annealing" title="bayesvalidrox.surrogate_models.engine.Engine.dual_annealing"><code class="xref py py-obj docutils literal notranslate"><span class="pre">dual_annealing</span></code></a>(method, Bounds, sigma2Dict, ...)</p></td> -<td><p>Exploration algorithm to find the optimum parameter space.</p></td> -</tr> <tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.eval_metamodel" title="bayesvalidrox.surrogate_models.engine.Engine.eval_metamodel"><code class="xref py py-obj docutils literal notranslate"><span class="pre">eval_metamodel</span></code></a>([samples, nsamples, ...])</p></td> <td><p>Evaluates metamodel at the requested samples.</p></td> </tr> -<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.run_util_func" title="bayesvalidrox.surrogate_models.engine.Engine.run_util_func"><code class="xref py py-obj docutils literal notranslate"><span class="pre">run_util_func</span></code></a>(method, candidates, index[, ...])</p></td> -<td><p>Runs the utility function based on the given method.</p></td> -</tr> -<tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.start_engine" title="bayesvalidrox.surrogate_models.engine.Engine.start_engine"><code class="xref py py-obj docutils literal notranslate"><span class="pre">start_engine</span></code></a>()</p></td> +<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.start_engine" title="bayesvalidrox.surrogate_models.engine.Engine.start_engine"><code class="xref py py-obj docutils literal notranslate"><span class="pre">start_engine</span></code></a>()</p></td> <td><p>Do all the preparations that need to be run before the actual training</p></td> </tr> -<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.tradeoff_weights" title="bayesvalidrox.surrogate_models.engine.Engine.tradeoff_weights"><code class="xref py py-obj docutils literal notranslate"><span class="pre">tradeoff_weights</span></code></a>(tradeoff_scheme, old_EDX, ...)</p></td> -<td><p>Calculates weights for exploration scores based on the requested scheme: <cite>None</cite>, <cite>equal</cite>, <cite>epsilon-decreasing</cite> and <cite>adaptive</cite>.</p></td> -</tr> <tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.train_normal" title="bayesvalidrox.surrogate_models.engine.Engine.train_normal"><code class="xref py py-obj docutils literal notranslate"><span class="pre">train_normal</span></code></a>([parallel, verbose, save])</p></td> <td><p>Trains surrogate on static samples only.</p></td> </tr> @@ -381,96 +373,16 @@ <tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.train_sequential" title="bayesvalidrox.surrogate_models.engine.Engine.train_sequential"><code class="xref py py-obj docutils literal notranslate"><span class="pre">train_sequential</span></code></a>([parallel, verbose])</p></td> <td><p>Train the surrogate in a sequential manner.</p></td> </tr> -<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.util_AlphOptDesign" title="bayesvalidrox.surrogate_models.engine.Engine.util_AlphOptDesign"><code class="xref py py-obj docutils literal notranslate"><span class="pre">util_AlphOptDesign</span></code></a>(candidates[, var])</p></td> -<td><p>Enriches the Experimental design with the requested alphabetic criterion based on exploring the space with number of sampling points.</p></td> -</tr> -<tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.util_BayesianActiveDesign" title="bayesvalidrox.surrogate_models.engine.Engine.util_BayesianActiveDesign"><code class="xref py py-obj docutils literal notranslate"><span class="pre">util_BayesianActiveDesign</span></code></a>(y_hat, std, sigma2Dict)</p></td> -<td><p>Computes scores based on Bayesian active design criterion (var).</p></td> -</tr> -<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.util_BayesianDesign" title="bayesvalidrox.surrogate_models.engine.Engine.util_BayesianDesign"><code class="xref py py-obj docutils literal notranslate"><span class="pre">util_BayesianDesign</span></code></a>(X_can, X_MC, sigma2Dict)</p></td> -<td><p>Computes scores based on Bayesian sequential design criterion (var).</p></td> -</tr> -<tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.util_VarBasedDesign" title="bayesvalidrox.surrogate_models.engine.Engine.util_VarBasedDesign"><code class="xref py py-obj docutils literal notranslate"><span class="pre">util_VarBasedDesign</span></code></a>(X_can, index[, util_func])</p></td> -<td><p>Computes the exploitation scores based on: active learning MacKay(ALM) and active learning Cohn (ALC) Paper: Sequential Design with Mutual Information for Computer Experiments (MICE): Emulation of a Tsunami Model by Beck and Guillas (2016)</p></td> -</tr> </tbody> </table> </div> -<dl class="py method"> -<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.choose_next_sample"> -<span class="sig-name descname"><span class="pre">choose_next_sample</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sigma2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_candidates</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'DKL'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.choose_next_sample" title="Link to this definition">¶</a></dt> -<dd><p>Runs optimal sequential design.</p> -<section id="parameters"> -<h2>Parameters<a class="headerlink" href="#parameters" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>sigma2<span class="classifier">dict, optional</span></dt><dd><p>A dictionary containing the measurement errors (sigma^2). The -default is None.</p> -</dd> -<dt>n_candidates<span class="classifier">int, optional</span></dt><dd><p>Number of candidate samples. The default is 5.</p> -</dd> -<dt>var<span class="classifier">string, optional</span></dt><dd><p>Utility function. The default is None. # TODO: default is set to DKL, not none</p> -</dd> -</dl> -</section> -<section id="raises"> -<h2>Raises<a class="headerlink" href="#raises" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>NameError</dt><dd><p>Wrong utility function.</p> -</dd> -</dl> -</section> -<section id="returns"> -<h2>Returns<a class="headerlink" href="#returns" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>Xnew<span class="classifier">array (n_samples, n_params)</span></dt><dd><p>Selected new training point(s).</p> -</dd> -</dl> -</section> -</dd></dl> - -<dl class="py method"> -<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.dual_annealing"> -<span class="sig-name descname"><span class="pre">dual_annealing</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">method</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">Bounds</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sigma2Dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">Run_No</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.dual_annealing" title="Link to this definition">¶</a></dt> -<dd><p>Exploration algorithm to find the optimum parameter space.</p> -<section id="id1"> -<h2>Parameters<a class="headerlink" href="#id1" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>method<span class="classifier">string</span></dt><dd><p>Exploitation method: <cite>VarOptDesign</cite>, <cite>BayesActDesign</cite> and -<cite>BayesOptDesign</cite>.</p> -</dd> -<dt>Bounds<span class="classifier">list of tuples</span></dt><dd><p>List of lower and upper boundaries of parameters.</p> -</dd> -<dt>sigma2Dict<span class="classifier">dict</span></dt><dd><p>A dictionary containing the measurement errors (sigma^2).</p> -</dd> -</dl> -<p>var : unknown -Run_No : int</p> -<blockquote> -<div><p>Run number.</p> -</div></blockquote> -<dl class="simple"> -<dt>verbose<span class="classifier">bool, optional</span></dt><dd><p>Print out a summary. The default is False.</p> -</dd> -</dl> -</section> -<section id="id2"> -<h2>Returns<a class="headerlink" href="#id2" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>Run_No<span class="classifier">int</span></dt><dd><p>Run number.</p> -</dd> -<dt>array</dt><dd><p>Optimial candidate.</p> -</dd> -</dl> -</section> -</dd></dl> - <dl class="py method"> <dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.eval_metamodel"> <span class="sig-name descname"><span class="pre">eval_metamodel</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">samples</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">nsamples</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sampling_method</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'random'</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">return_samples</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parallel</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.eval_metamodel" title="Link to this definition">¶</a></dt> <dd><p>Evaluates metamodel at the requested samples. One can also generate nsamples.</p> -<section id="id3"> -<h2>Parameters<a class="headerlink" href="#id3" title="Link to this heading">¶</a></h2> +<section id="parameters"> +<h2>Parameters<a class="headerlink" href="#parameters" title="Link to this heading">¶</a></h2> <dl class="simple"> <dt>samples<span class="classifier">array of shape (n_samples, n_params), optional</span></dt><dd><p>Samples to evaluate metamodel at. The default is None.</p> </dd> @@ -487,8 +399,8 @@ The default is False.</p> </dd> </dl> </section> -<section id="id4"> -<h2>Returns<a class="headerlink" href="#id4" title="Link to this heading">¶</a></h2> +<section id="returns"> +<h2>Returns<a class="headerlink" href="#returns" title="Link to this heading">¶</a></h2> <dl class="simple"> <dt>mean_pred<span class="classifier">dict</span></dt><dd><p>Mean of the predictions.</p> </dd> @@ -498,90 +410,16 @@ The default is False.</p> </section> </dd></dl> -<dl class="py method"> -<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.run_util_func"> -<span class="sig-name descname"><span class="pre">run_util_func</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">method</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">candidates</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">index</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sigma2Dict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">X_MC</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.run_util_func" title="Link to this definition">¶</a></dt> -<dd><p>Runs the utility function based on the given method.</p> -<section id="id5"> -<h2>Parameters<a class="headerlink" href="#id5" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>method<span class="classifier">string</span></dt><dd><p>Exploitation method: <cite>VarOptDesign</cite>, <cite>BayesActDesign</cite> and -<cite>BayesOptDesign</cite>.</p> -</dd> -<dt>candidates<span class="classifier">array of shape (n_samples, n_params)</span></dt><dd><p>All candidate parameter sets.</p> -</dd> -<dt>index<span class="classifier">int</span></dt><dd><p>ExpDesign index.</p> -</dd> -<dt>sigma2Dict<span class="classifier">dict, optional</span></dt><dd><p>A dictionary containing the measurement errors (sigma^2). The -default is None.</p> -</dd> -<dt>var<span class="classifier">string, optional</span></dt><dd><p>Utility function. The default is None.</p> -</dd> -<dt>X_MC<span class="classifier">TYPE, optional</span></dt><dd><p>DESCRIPTION. The default is None.</p> -</dd> -</dl> -</section> -<section id="id6"> -<h2>Returns<a class="headerlink" href="#id6" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>index<span class="classifier">TYPE</span></dt><dd><p>DESCRIPTION.</p> -</dd> -<dt>List</dt><dd><p>Scores.</p> -</dd> -</dl> -</section> -</dd></dl> - <dl class="py method"> <dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.start_engine"> <span class="sig-name descname"><span class="pre">start_engine</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">→</span> <span class="sig-return-typehint"><span class="pre">None</span></span></span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.start_engine" title="Link to this definition">¶</a></dt> <dd><p>Do all the preparations that need to be run before the actual training</p> -<section id="id7"> -<h2>Returns<a class="headerlink" href="#id7" title="Link to this heading">¶</a></h2> +<section id="id1"> +<h2>Returns<a class="headerlink" href="#id1" title="Link to this heading">¶</a></h2> <p>None</p> </section> </dd></dl> -<dl class="py method"> -<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.tradeoff_weights"> -<span class="sig-name descname"><span class="pre">tradeoff_weights</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">tradeoff_scheme</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">old_EDX</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">old_EDY</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.tradeoff_weights" title="Link to this definition">¶</a></dt> -<dd><p>Calculates weights for exploration scores based on the requested -scheme: <cite>None</cite>, <cite>equal</cite>, <cite>epsilon-decreasing</cite> and <cite>adaptive</cite>.</p> -<p><cite>None</cite>: No exploration. -<cite>equal</cite>: Same weights for exploration and exploitation scores. -<cite>epsilon-decreasing</cite>: Start with more exploration and increase the</p> -<blockquote> -<div><p>influence of exploitation along the way with an exponential decay -function</p> -</div></blockquote> -<dl class="simple"> -<dt><cite>adaptive</cite>: An adaptive method based on:</dt><dd><p>Liu, Haitao, Jianfei Cai, and Yew-Soon Ong. “An adaptive sampling -approach for Kriging metamodeling by maximizing expected prediction -error.†Computers & Chemical Engineering 106 (2017): 171-182.</p> -</dd> -</dl> -<section id="id8"> -<h2>Parameters<a class="headerlink" href="#id8" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>tradeoff_scheme<span class="classifier">string</span></dt><dd><p>Trade-off scheme for exloration and exploitation scores.</p> -</dd> -<dt>old_EDX<span class="classifier">array (n_samples, n_params)</span></dt><dd><p>Old experimental design (training points).</p> -</dd> -<dt>old_EDY<span class="classifier">dict</span></dt><dd><p>Old model responses (targets).</p> -</dd> -</dl> -</section> -<section id="id9"> -<h2>Returns<a class="headerlink" href="#id9" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>exploration_weight<span class="classifier">float</span></dt><dd><p>Exploration weight.</p> -</dd> -<dt>exploitation_weight: float</dt><dd><p>Exploitation weight.</p> -</dd> -</dl> -</section> -</dd></dl> - <dl class="py method"> <dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.train_normal"> <span class="sig-name descname"><span class="pre">train_normal</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">parallel</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">save</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">→</span> <span class="sig-return-typehint"><span class="pre">None</span></span></span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.train_normal" title="Link to this definition">¶</a></dt> @@ -589,8 +427,8 @@ error.†Computers & Chemical Engineering 106 (2017): 171-182.</p> Samples are taken from the experimental design and the specified model is run on them. Alternatively the samples can be read in from a provided hdf5 file.</p> -<section id="id10"> -<h2>Returns<a class="headerlink" href="#id10" title="Link to this heading">¶</a></h2> +<section id="id2"> +<h2>Returns<a class="headerlink" href="#id2" title="Link to this heading">¶</a></h2> <p>None</p> </section> </dd></dl> @@ -600,8 +438,8 @@ Alternatively the samples can be read in from a provided hdf5 file.</p> <span class="sig-name descname"><span class="pre">train_seq_design</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">parallel</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.train_seq_design" title="Link to this definition">¶</a></dt> <dd><p>Starts the adaptive sequential design for refining the surrogate model by selecting training points in a sequential manner.</p> -<section id="id11"> -<h2>Returns<a class="headerlink" href="#id11" title="Link to this heading">¶</a></h2> +<section id="id3"> +<h2>Returns<a class="headerlink" href="#id3" title="Link to this heading">¶</a></h2> <dl class="simple"> <dt>MetaModel<span class="classifier">object</span></dt><dd><p>Meta model object.</p> </dd> @@ -615,125 +453,12 @@ by selecting training points in a sequential manner.</p> <dd><p>Train the surrogate in a sequential manner. First build and train evereything on the static samples, then iterate choosing more samples and refitting the surrogate on them.</p> -<section id="id12"> -<h2>Returns<a class="headerlink" href="#id12" title="Link to this heading">¶</a></h2> +<section id="id4"> +<h2>Returns<a class="headerlink" href="#id4" title="Link to this heading">¶</a></h2> <p>None</p> </section> </dd></dl> -<dl class="py method"> -<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.util_AlphOptDesign"> -<span class="sig-name descname"><span class="pre">util_AlphOptDesign</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">candidates</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'D-Opt'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.util_AlphOptDesign" title="Link to this definition">¶</a></dt> -<dd><p>Enriches the Experimental design with the requested alphabetic -criterion based on exploring the space with number of sampling points.</p> -<p>Ref: Hadigol, M., & Doostan, A. (2018). Least squares polynomial chaos -expansion: A review of sampling strategies., Computer Methods in -Applied Mechanics and Engineering, 332, 382-407.</p> -<section id="arguments"> -<h2>Arguments<a class="headerlink" href="#arguments" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>candidates<span class="classifier">int?</span></dt><dd><p>Number of candidate points to be searched</p> -</dd> -<dt>var<span class="classifier">string</span></dt><dd><p>Alphabetic optimality criterion</p> -</dd> -</dl> -</section> -<section id="id13"> -<h2>Returns<a class="headerlink" href="#id13" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>X_new<span class="classifier">array of shape (1, n_params)</span></dt><dd><p>The new sampling location in the input space.</p> -</dd> -</dl> -</section> -</dd></dl> - -<dl class="py method"> -<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.util_BayesianActiveDesign"> -<span class="sig-name descname"><span class="pre">util_BayesianActiveDesign</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">y_hat</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">std</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sigma2Dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'DKL'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.util_BayesianActiveDesign" title="Link to this definition">¶</a></dt> -<dd><p>Computes scores based on Bayesian active design criterion (var).</p> -<p>It is based on the following paper: -Oladyshkin, Sergey, Farid Mohammadi, Ilja Kroeker, and Wolfgang Nowak. -“Bayesian3 active learning for the gaussian process emulator using -information theory.†Entropy 22, no. 8 (2020): 890.</p> -<section id="id14"> -<h2>Parameters<a class="headerlink" href="#id14" title="Link to this heading">¶</a></h2> -<p>y_hat : unknown -std : unknown -sigma2Dict : dict</p> -<blockquote> -<div><p>A dictionary containing the measurement errors (sigma^2).</p> -</div></blockquote> -<dl class="simple"> -<dt>var<span class="classifier">string, optional</span></dt><dd><p>BAL design criterion. The default is ‘DKL’.</p> -</dd> -</dl> -</section> -<section id="id15"> -<h2>Returns<a class="headerlink" href="#id15" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>float</dt><dd><p>Score.</p> -</dd> -</dl> -</section> -</dd></dl> - -<dl class="py method"> -<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.util_BayesianDesign"> -<span class="sig-name descname"><span class="pre">util_BayesianDesign</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">X_can</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">X_MC</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sigma2Dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'DKL'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.util_BayesianDesign" title="Link to this definition">¶</a></dt> -<dd><p>Computes scores based on Bayesian sequential design criterion (var).</p> -<section id="id16"> -<h2>Parameters<a class="headerlink" href="#id16" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>X_can<span class="classifier">array of shape (n_samples, n_params)</span></dt><dd><p>Candidate samples.</p> -</dd> -</dl> -<p>X_MC : unknown -sigma2Dict : dict</p> -<blockquote> -<div><p>A dictionary containing the measurement errors (sigma^2).</p> -</div></blockquote> -<dl class="simple"> -<dt>var<span class="classifier">string, optional</span></dt><dd><p>Bayesian design criterion. The default is ‘DKL’.</p> -</dd> -</dl> -</section> -<section id="id17"> -<h2>Returns<a class="headerlink" href="#id17" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>float</dt><dd><p>Score.</p> -</dd> -</dl> -</section> -</dd></dl> - -<dl class="py method"> -<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.engine.Engine.util_VarBasedDesign"> -<span class="sig-name descname"><span class="pre">util_VarBasedDesign</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">X_can</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">index</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">util_func</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Entropy'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.engine.Engine.util_VarBasedDesign" title="Link to this definition">¶</a></dt> -<dd><p>Computes the exploitation scores based on: -active learning MacKay(ALM) and active learning Cohn (ALC) -Paper: Sequential Design with Mutual Information for Computer -Experiments (MICE): Emulation of a Tsunami Model by Beck and Guillas -(2016)</p> -<section id="id18"> -<h2>Parameters<a class="headerlink" href="#id18" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>X_can<span class="classifier">array of shape (n_samples, n_params)</span></dt><dd><p>Candidate samples.</p> -</dd> -<dt>index<span class="classifier">int</span></dt><dd><p>Model output index.</p> -</dd> -<dt>util_func<span class="classifier">string, optional</span></dt><dd><p>Exploitation utility function. The default is ‘Entropy’.</p> -</dd> -</dl> -</section> -<section id="id19"> -<h2>Returns<a class="headerlink" href="#id19" title="Link to this heading">¶</a></h2> -<dl class="simple"> -<dt>float</dt><dd><p>Score.</p> -</dd> -</dl> -</section> -</dd></dl> - </dd></dl> </section> @@ -752,14 +477,14 @@ Experiments (MICE): Emulation of a Tsunami Model by Beck and Guillas </div> <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> </a> - <a class="prev-page" href="bayesvalidrox.surrogate_models.engine.subdomain.html"> + <a class="prev-page" href="bayesvalidrox.surrogate_models.engine.html"> <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> <div class="page-info"> <div class="context"> <span>Previous</span> </div> - <div class="title">bayesvalidrox.surrogate_models.engine.subdomain</div> + <div class="title">bayesvalidrox.surrogate_models.engine</div> </div> </a> @@ -796,19 +521,11 @@ Experiments (MICE): Emulation of a Tsunami Model by Beck and Guillas <li><a class="reference internal" href="#">bayesvalidrox.surrogate_models.engine.Engine</a><ul> <li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine"><code class="docutils literal notranslate"><span class="pre">Engine</span></code></a><ul> <li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.__init__"><code class="docutils literal notranslate"><span class="pre">Engine.__init__()</span></code></a></li> -<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.choose_next_sample"><code class="docutils literal notranslate"><span class="pre">Engine.choose_next_sample()</span></code></a></li> -<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.dual_annealing"><code class="docutils literal notranslate"><span class="pre">Engine.dual_annealing()</span></code></a></li> <li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.eval_metamodel"><code class="docutils literal notranslate"><span class="pre">Engine.eval_metamodel()</span></code></a></li> -<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.run_util_func"><code class="docutils literal notranslate"><span class="pre">Engine.run_util_func()</span></code></a></li> <li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.start_engine"><code class="docutils literal notranslate"><span class="pre">Engine.start_engine()</span></code></a></li> -<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.tradeoff_weights"><code class="docutils literal notranslate"><span class="pre">Engine.tradeoff_weights()</span></code></a></li> <li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.train_normal"><code class="docutils literal notranslate"><span class="pre">Engine.train_normal()</span></code></a></li> <li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.train_seq_design"><code class="docutils literal notranslate"><span class="pre">Engine.train_seq_design()</span></code></a></li> <li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.train_sequential"><code class="docutils literal notranslate"><span class="pre">Engine.train_sequential()</span></code></a></li> -<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.util_AlphOptDesign"><code class="docutils literal notranslate"><span class="pre">Engine.util_AlphOptDesign()</span></code></a></li> -<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.util_BayesianActiveDesign"><code class="docutils literal notranslate"><span class="pre">Engine.util_BayesianActiveDesign()</span></code></a></li> -<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.util_BayesianDesign"><code class="docutils literal notranslate"><span class="pre">Engine.util_BayesianDesign()</span></code></a></li> -<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.engine.Engine.util_VarBasedDesign"><code class="docutils literal notranslate"><span class="pre">Engine.util_VarBasedDesign()</span></code></a></li> </ul> </li> </ul> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html b/public/_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html index 1468932d599cc45192028e30c4a3a7afb897a1f8..87538b6e27b06b650812f4d22c7d3c40a7e6ab6c 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html @@ -3,7 +3,7 @@ <head><meta charset="utf-8"/> <meta name="viewport" content="width=device-width,initial-scale=1"/> <meta name="color-scheme" content="light dark"><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" /> -<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="bayesvalidrox.surrogate_models.engine.logpdf" href="bayesvalidrox.surrogate_models.engine.logpdf.html" /><link rel="prev" title="bayesvalidrox.surrogate_models.engine" href="bayesvalidrox.surrogate_models.engine.html" /> +<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /> <!-- Generated with Sphinx 7.3.7 and Furo 2023.09.10 --> <title>bayesvalidrox.surrogate_models.engine.hellinger_distance - bayesvalidrox 1.0.0 documentation</title> @@ -163,7 +163,7 @@ <input type="hidden" name="area" value="default"> </form> <div id="searchbox"></div><div class="sidebar-scroll"><div class="sidebar-tree"> - <ul class="current"> + <ul> <li class="toctree-l1 has-children"><a class="reference internal" href="../packagedescription.html">USER GUIDE</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><div class="visually-hidden">Toggle navigation of USER GUIDE</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l2"><a class="reference internal" href="../input_description.html">Priors, input space and experimental design</a></li> <li class="toctree-l2"><a class="reference internal" href="../model_description.html">Models</a></li> @@ -185,8 +185,8 @@ <li class="toctree-l2"><a class="reference internal" href="../pollution.html">Pollution</a></li> </ul> </li> -<li class="toctree-l1 current has-children"><a class="reference internal" href="../api.html">API</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-3" name="toctree-checkbox-3" role="switch" type="checkbox"/><label for="toctree-checkbox-3"><div 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href="bayesvalidrox.bayes_inference.bayes_inference.html">bayesvalidrox.bayes_inference.bayes_inference</a><input class="toctree-checkbox" id="toctree-checkbox-6" name="toctree-checkbox-6" role="switch" type="checkbox"/><label for="toctree-checkbox-6"><div class="visually-hidden">Toggle navigation of bayesvalidrox.bayes_inference.bayes_inference</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.bayes_inference.bayes_inference.BayesInference.html">bayesvalidrox.bayes_inference.bayes_inference.BayesInference</a></li> @@ -222,7 +222,7 @@ </li> </ul> </li> -<li class="toctree-l3 current has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.html">bayesvalidrox.surrogate_models</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-14" name="toctree-checkbox-14" role="switch" type="checkbox"/><label for="toctree-checkbox-14"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul class="current"> +<li class="toctree-l3 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.html">bayesvalidrox.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-14" name="toctree-checkbox-14" role="switch" type="checkbox"/><label for="toctree-checkbox-14"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.adaptPlot.html">bayesvalidrox.surrogate_models.adaptPlot</a><input class="toctree-checkbox" id="toctree-checkbox-15" name="toctree-checkbox-15" role="switch" type="checkbox"/><label for="toctree-checkbox-15"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.adaptPlot</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.adaptPlot.adaptPlot.html">bayesvalidrox.surrogate_models.adaptPlot.adaptPlot</a></li> </ul> @@ -238,10 +238,7 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.bayes_linear.VBLinearRegression.html">bayesvalidrox.surrogate_models.bayes_linear.VBLinearRegression</a></li> </ul> </li> -<li class="toctree-l4 current has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul class="current"> -<li class="toctree-l5 current current-page"><a class="current reference internal" href="#">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> @@ -370,26 +374,8 @@ every set to which Q assigns a positive probability, and vice versa. <footer> <div class="related-pages"> - <a class="next-page" href="bayesvalidrox.surrogate_models.engine.logpdf.html"> - <div class="page-info"> - <div class="context"> - <span>Next</span> - </div> - <div class="title">bayesvalidrox.surrogate_models.engine.logpdf</div> - </div> - <svg class="furo-related-icon"><use 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content="Docutils 0.18.1: http://docutils.sourceforge.net/" /> -<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="bayesvalidrox.surrogate_models.engine.hellinger_distance" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html" /><link rel="prev" title="bayesvalidrox.surrogate_models.bayes_linear.VBLinearRegression" href="bayesvalidrox.surrogate_models.bayes_linear.VBLinearRegression.html" /> +<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="bayesvalidrox.surrogate_models.engine.Engine" href="bayesvalidrox.surrogate_models.engine.Engine.html" /><link rel="prev" title="bayesvalidrox.surrogate_models.bayes_linear.VBLinearRegression" href="bayesvalidrox.surrogate_models.bayes_linear.VBLinearRegression.html" /> <!-- Generated with Sphinx 7.3.7 and Furo 2023.09.10 --> <title>bayesvalidrox.surrogate_models.engine - bayesvalidrox 1.0.0 documentation</title> @@ -141,7 +141,7 @@ <svg class="theme-icon-when-light"><use href="#svg-sun"></use></svg> </button> </div> - <label class="toc-overlay-icon toc-header-icon" for="__toc"> + <label class="toc-overlay-icon toc-header-icon no-toc" for="__toc"> <div class="visually-hidden">Toggle table of contents sidebar</div> <i class="icon"><svg><use href="#svg-toc"></use></svg></i> </label> @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 current has-children current-page"><a class="current reference internal" href="#">bayesvalidrox.surrogate_models.engine</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" 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href="#svg-sun"></use></svg> </button> </div> - <label class="toc-overlay-icon toc-content-icon" for="__toc"> + <label class="toc-overlay-icon toc-content-icon no-toc" for="__toc"> <div class="visually-hidden">Toggle table of contents sidebar</div> <i class="icon"><svg><use href="#svg-toc"></use></svg></i> </label> @@ -339,22 +343,6 @@ <section id="module-bayesvalidrox.surrogate_models.engine"> <span id="bayesvalidrox-surrogate-models-engine"></span><h1>bayesvalidrox.surrogate_models.engine<a class="headerlink" href="#module-bayesvalidrox.surrogate_models.engine" title="Link to this heading">¶</a></h1> <p>Engine to train the surrogate</p> -<p class="rubric">Functions</p> -<div class="table-wrapper autosummary longtable docutils container"> -<table class="autosummary longtable docutils align-default"> -<tbody> -<tr class="row-odd"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html#bayesvalidrox.surrogate_models.engine.hellinger_distance" title="bayesvalidrox.surrogate_models.engine.hellinger_distance"><code class="xref py py-obj docutils literal notranslate"><span class="pre">hellinger_distance</span></code></a>(P, Q)</p></td> -<td><p>Hellinger distance between two continuous distributions.</p></td> -</tr> -<tr class="row-even"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html#bayesvalidrox.surrogate_models.engine.logpdf" title="bayesvalidrox.surrogate_models.engine.logpdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">logpdf</span></code></a>(x, mean, cov)</p></td> -<td><p>Computes the likelihood based on a multivariate normal distribution.</p></td> -</tr> -<tr class="row-odd"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html#bayesvalidrox.surrogate_models.engine.subdomain" title="bayesvalidrox.surrogate_models.engine.subdomain"><code class="xref py py-obj docutils literal notranslate"><span class="pre">subdomain</span></code></a>(Bounds, n_new_samples)</p></td> -<td><p>Divides a domain defined by Bounds into subdomains.</p></td> -</tr> -</tbody> -</table> -</div> <p class="rubric">Classes</p> <div class="table-wrapper autosummary longtable docutils container"> <table class="autosummary longtable docutils align-default"> @@ -372,12 +360,12 @@ <footer> <div class="related-pages"> - <a class="next-page" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html"> + <a class="next-page" href="bayesvalidrox.surrogate_models.engine.Engine.html"> <div class="page-info"> <div class="context"> <span>Next</span> </div> - <div class="title">bayesvalidrox.surrogate_models.engine.hellinger_distance</div> + <div class="title">bayesvalidrox.surrogate_models.engine.Engine</div> </div> <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> </a> @@ -410,26 +398,8 @@ </footer> </div> - <aside class="toc-drawer"> - + <aside class="toc-drawer no-toc"> - <div class="toc-sticky toc-scroll"> - <div class="toc-title-container"> - <span class="toc-title"> - On this page - </span> - </div> - <div class="toc-tree-container"> - <div class="toc-tree"> - <ul> -<li><a class="reference internal" href="#">bayesvalidrox.surrogate_models.engine</a><ul> -</ul> -</li> -</ul> - - </div> - </div> - </div> </aside> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html b/public/_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html index edd1833426247f70787c0adbf9956b4ab1214dca..2e1b1766be2ca1a0203eca5857e1b052f15ca7ec 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html @@ -3,7 +3,7 @@ <head><meta charset="utf-8"/> <meta name="viewport" content="width=device-width,initial-scale=1"/> <meta name="color-scheme" content="light dark"><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" /> -<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="bayesvalidrox.surrogate_models.engine.subdomain" href="bayesvalidrox.surrogate_models.engine.subdomain.html" /><link rel="prev" title="bayesvalidrox.surrogate_models.engine.hellinger_distance" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html" /> +<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /> <!-- Generated with Sphinx 7.3.7 and Furo 2023.09.10 --> <title>bayesvalidrox.surrogate_models.engine.logpdf - bayesvalidrox 1.0.0 documentation</title> @@ -163,7 +163,7 @@ <input type="hidden" name="area" value="default"> </form> <div id="searchbox"></div><div class="sidebar-scroll"><div class="sidebar-tree"> - <ul class="current"> + <ul> <li class="toctree-l1 has-children"><a class="reference internal" href="../packagedescription.html">USER GUIDE</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><div class="visually-hidden">Toggle navigation of USER GUIDE</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l2"><a class="reference internal" href="../input_description.html">Priors, input space and experimental design</a></li> <li class="toctree-l2"><a class="reference internal" href="../model_description.html">Models</a></li> @@ -185,8 +185,8 @@ <li class="toctree-l2"><a class="reference internal" href="../pollution.html">Pollution</a></li> </ul> </li> -<li class="toctree-l1 current has-children"><a class="reference internal" href="../api.html">API</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-3" name="toctree-checkbox-3" role="switch" type="checkbox"/><label 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href="bayesvalidrox.bayes_inference.bayes_inference.html">bayesvalidrox.bayes_inference.bayes_inference</a><input class="toctree-checkbox" id="toctree-checkbox-6" name="toctree-checkbox-6" role="switch" type="checkbox"/><label for="toctree-checkbox-6"><div class="visually-hidden">Toggle navigation of bayesvalidrox.bayes_inference.bayes_inference</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.bayes_inference.bayes_inference.BayesInference.html">bayesvalidrox.bayes_inference.bayes_inference.BayesInference</a></li> @@ -222,7 +222,7 @@ </li> </ul> </li> -<li class="toctree-l3 current has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.html">bayesvalidrox.surrogate_models</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-14" name="toctree-checkbox-14" role="switch" type="checkbox"/><label for="toctree-checkbox-14"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul class="current"> +<li class="toctree-l3 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.html">bayesvalidrox.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-14" name="toctree-checkbox-14" role="switch" type="checkbox"/><label for="toctree-checkbox-14"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.adaptPlot.html">bayesvalidrox.surrogate_models.adaptPlot</a><input class="toctree-checkbox" id="toctree-checkbox-15" name="toctree-checkbox-15" role="switch" type="checkbox"/><label for="toctree-checkbox-15"><div class="visually-hidden">Toggle navigation of 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href="#svg-arrow-right"></use></svg></i></label><ul class="current"> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5 current current-page"><a class="current reference internal" href="#">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> @@ -369,26 +373,8 @@ <footer> <div class="related-pages"> - <a class="next-page" href="bayesvalidrox.surrogate_models.engine.subdomain.html"> - <div class="page-info"> - <div class="context"> - <span>Next</span> - </div> - <div class="title">bayesvalidrox.surrogate_models.engine.subdomain</div> - </div> - <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> - </a> - <a class="prev-page" 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b/public/_autosummary/bayesvalidrox.surrogate_models.eval_rec_rule.eval_rec_rule_arbitrary.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.eval_rec_rule.html b/public/_autosummary/bayesvalidrox.surrogate_models.eval_rec_rule.html index e566e9fc99989237f175a8313b24f228f845c8fa..89766ae2077997e3f981eb278c006aac15ff051c 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.eval_rec_rule.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.eval_rec_rule.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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b/public/_autosummary/bayesvalidrox.surrogate_models.eval_rec_rule.poly_rec_coeffs.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.ExpDesigns.html b/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.ExpDesigns.html index ebb205a5b7b266e9b1a0e311ec1acc8bf57d44ba..7f9f2e9cf0ccce8df96cfafd361c53b1ffd89340 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.ExpDesigns.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.ExpDesigns.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.check_ranges.html b/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.check_ranges.html index 3f8c99c60c8dd63fa9a94a927f2e293699489f0a..e98db267f1588830bb426069e734b04da48f6bcb 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.check_ranges.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.check_ranges.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.html b/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.html index 12f3e3b7b66a1370b00dc69415423fa565ed9b25..ba7b82cbcf141437a1c48406d95b32f5e5315fcc 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.exp_designs.html @@ -239,9 +239,6 @@ </ul> </li> <li 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b/public/_autosummary/bayesvalidrox.surrogate_models.exploration.Exploration.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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b/public/_autosummary/bayesvalidrox.surrogate_models.glexindex.cross_truncate.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.glexindex.glexindex.html b/public/_autosummary/bayesvalidrox.surrogate_models.glexindex.glexindex.html index 128c4263055ecdbbcc5d460d2d56ea0d769d1c16..92b6a674af2e2d76748534293422892cd2e14d76 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.glexindex.glexindex.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.glexindex.glexindex.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" 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class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.glexindex.html b/public/_autosummary/bayesvalidrox.surrogate_models.glexindex.html index f22f1237773177ce5762b38a38886c265b3ef192..258c40d3e0abab45ce8a673a917828567c5abe2c 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.glexindex.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.glexindex.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.html b/public/_autosummary/bayesvalidrox.surrogate_models.html index 551916f8f3ec882453665ebd48bcc2b7323f3486..ab695f5bf2354bb7f61fda5d9b9d310dc88233ed 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> @@ -381,7 +385,10 @@ <tr class="row-odd"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.html#module-bayesvalidrox.surrogate_models.reg_fast_laplace" title="bayesvalidrox.surrogate_models.reg_fast_laplace"><code class="xref py py-obj docutils literal notranslate"><span class="pre">bayesvalidrox.surrogate_models.reg_fast_laplace</span></code></a></p></td> <td><p></p></td> </tr> -<tr class="row-even"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html#module-bayesvalidrox.surrogate_models.surrogate_models" title="bayesvalidrox.surrogate_models.surrogate_models"><code class="xref py py-obj docutils literal notranslate"><span class="pre">bayesvalidrox.surrogate_models.surrogate_models</span></code></a></p></td> +<tr class="row-even"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.html#module-bayesvalidrox.surrogate_models.sequential_design" title="bayesvalidrox.surrogate_models.sequential_design"><code class="xref py py-obj docutils literal notranslate"><span class="pre">bayesvalidrox.surrogate_models.sequential_design</span></code></a></p></td> +<td><p>Engine to train the surrogate</p></td> +</tr> +<tr class="row-odd"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html#module-bayesvalidrox.surrogate_models.surrogate_models" title="bayesvalidrox.surrogate_models.surrogate_models"><code class="xref py py-obj docutils literal notranslate"><span class="pre">bayesvalidrox.surrogate_models.surrogate_models</span></code></a></p></td> <td><p>Implementation of metamodel as either PC, aPC or GPE</p></td> </tr> </tbody> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.input_space.InputSpace.html b/public/_autosummary/bayesvalidrox.surrogate_models.input_space.InputSpace.html index f9d2df3bd39fc5c30cbc9d2128f7aed6e5e7bc29..3bec67f0e6137d18caea393fdc81089919b75bb8 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.input_space.InputSpace.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.input_space.InputSpace.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.input_space.html b/public/_autosummary/bayesvalidrox.surrogate_models.input_space.html index 7c8cd929947740190455750c4ad506dbc9f529dc..c4f268e65c16da970838d35540d980a73ca4bf4d 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.input_space.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.input_space.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.inputs.Input.html b/public/_autosummary/bayesvalidrox.surrogate_models.inputs.Input.html index c3b3d9d99e6cb98532d79851949b7bba29ffd6db..8f225afb9e79f0732af43a17735f71b2dac731b5 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.inputs.Input.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.inputs.Input.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" 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href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.inputs.Marginal.html b/public/_autosummary/bayesvalidrox.surrogate_models.inputs.Marginal.html index fcb16dad3f7ae7c501f6b1b30b0b795ad19d8bc1..3b96f208b5b4017a21544986c65222879f050b79 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.inputs.Marginal.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.inputs.Marginal.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" 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+286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" 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href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.inputs.html b/public/_autosummary/bayesvalidrox.surrogate_models.inputs.html index 4e16820e398f7ce11159e57c7b6a96aaf03160b5..7e36e52bda6947c00f3bfa4cadceccb6013751e0 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.inputs.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.inputs.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" 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class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" 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href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.OrthogonalMatchingPursuit.html b/public/_autosummary/bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.OrthogonalMatchingPursuit.html index 7e9829327c67c5f597d11b613427c8ff235d4705..a289b69c76ebd90b168de6378cc7c447f13bb582 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.OrthogonalMatchingPursuit.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.OrthogonalMatchingPursuit.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.corr.html b/public/_autosummary/bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.corr.html index 8f61f3d066b8c15efb6f1dc676309ef43da0101c..c7881a0ed56f9a24bc6685dd01e7a240016302d9 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.corr.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.corr.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference 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b/public/_autosummary/bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference 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b/public/_autosummary/bayesvalidrox.surrogate_models.reg_fast_ard.RegressionFastARD.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference 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b/public/_autosummary/bayesvalidrox.surrogate_models.reg_fast_ard.update_precisions.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference 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+<h1>bayesvalidrox.surrogate_models.sequential_design.SequentialDesign<a class="headerlink" href="#bayesvalidrox-surrogate-models-sequential-design-sequentialdesign" title="Link to this heading">¶</a></h1> +<dl class="py class"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign"> +<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">bayesvalidrox.surrogate_models.sequential_design.</span></span><span class="sig-name descname"><span class="pre">SequentialDesign</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">MetaMod</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">Model</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ExpDes</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">engine</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parallel</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign" title="Link to this definition">¶</a></dt> +<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p> +<p>Contains options for choosing the next training sample iteratively.</p> +<dl class="py method"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.__init__"> +<span class="sig-name descname"><span class="pre">__init__</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">MetaMod</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">Model</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ExpDes</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">engine</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parallel</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.__init__" title="Link to this definition">¶</a></dt> +<dd></dd></dl> + +<p class="rubric">Methods</p> +<div class="table-wrapper autosummary longtable docutils container"> +<table class="autosummary longtable docutils align-default"> +<tbody> +<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.__init__" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.__init__"><code class="xref py py-obj docutils literal notranslate"><span class="pre">__init__</span></code></a>(MetaMod, Model, ExpDes, engine[, ...])</p></td> +<td><p></p></td> +</tr> +<tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.choose_next_sample" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.choose_next_sample"><code class="xref py py-obj docutils literal notranslate"><span class="pre">choose_next_sample</span></code></a>([sigma2, n_candidates, var])</p></td> +<td><p>Runs optimal sequential design.</p></td> +</tr> +<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.dual_annealing" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.dual_annealing"><code class="xref py py-obj docutils literal notranslate"><span class="pre">dual_annealing</span></code></a>(method, Bounds, sigma2Dict, ...)</p></td> +<td><p>Exploration algorithm to find the optimum parameter space.</p></td> +</tr> +<tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.run_util_func" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.run_util_func"><code class="xref py py-obj docutils literal notranslate"><span class="pre">run_util_func</span></code></a>(method, candidates, index[, ...])</p></td> +<td><p>Runs the utility function based on the given method.</p></td> +</tr> +<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.start_seqdesign" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.start_seqdesign"><code class="xref py py-obj docutils literal notranslate"><span class="pre">start_seqdesign</span></code></a>()</p></td> +<td><p>Do all the preparations that need to be run before the actual training</p></td> +</tr> +<tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.tradeoff_weights" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.tradeoff_weights"><code class="xref py py-obj docutils literal notranslate"><span class="pre">tradeoff_weights</span></code></a>(tradeoff_scheme, old_EDX, ...)</p></td> +<td><p>Calculates weights for exploration scores based on the requested scheme: <cite>None</cite>, <cite>equal</cite>, <cite>epsilon-decreasing</cite> and <cite>adaptive</cite>.</p></td> +</tr> +<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_AlphOptDesign" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_AlphOptDesign"><code class="xref py py-obj docutils literal notranslate"><span class="pre">util_AlphOptDesign</span></code></a>(candidates[, var])</p></td> +<td><p>Enriches the Experimental design with the requested alphabetic criterion based on exploring the space with number of sampling points.</p></td> +</tr> +<tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianActiveDesign" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianActiveDesign"><code class="xref py py-obj docutils literal notranslate"><span class="pre">util_BayesianActiveDesign</span></code></a>(y_hat, std, sigma2Dict)</p></td> +<td><p>Computes scores based on Bayesian active design criterion (var).</p></td> +</tr> +<tr class="row-odd"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianDesign" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianDesign"><code class="xref py py-obj docutils literal notranslate"><span class="pre">util_BayesianDesign</span></code></a>(X_can, X_MC, sigma2Dict)</p></td> +<td><p>Computes scores based on Bayesian sequential design criterion (var).</p></td> +</tr> +<tr class="row-even"><td><p><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_VarBasedDesign" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_VarBasedDesign"><code class="xref py py-obj docutils literal notranslate"><span class="pre">util_VarBasedDesign</span></code></a>(X_can, index[, util_func])</p></td> +<td><p>Computes the exploitation scores based on: active learning MacKay(ALM) and active learning Cohn (ALC) Paper: Sequential Design with Mutual Information for Computer Experiments (MICE): Emulation of a Tsunami Model by Beck and Guillas (2016)</p></td> +</tr> +</tbody> +</table> +</div> +<dl class="py method"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.choose_next_sample"> +<span class="sig-name descname"><span class="pre">choose_next_sample</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">sigma2</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_candidates</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">5</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'DKL'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.choose_next_sample" title="Link to this definition">¶</a></dt> +<dd><p>Runs optimal sequential design.</p> +<section id="parameters"> +<h2>Parameters<a class="headerlink" href="#parameters" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>sigma2<span class="classifier">dict, optional</span></dt><dd><p>A dictionary containing the measurement errors (sigma^2). The +default is None.</p> +</dd> +<dt>n_candidates<span class="classifier">int, optional</span></dt><dd><p>Number of candidate samples. The default is 5.</p> +</dd> +<dt>var<span class="classifier">string, optional</span></dt><dd><p>Utility function. The default is None. # TODO: default is set to DKL, not none</p> +</dd> +</dl> +</section> +<section id="raises"> +<h2>Raises<a class="headerlink" href="#raises" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>NameError</dt><dd><p>Wrong utility function.</p> +</dd> +</dl> +</section> +<section id="returns"> +<h2>Returns<a class="headerlink" href="#returns" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>Xnew<span class="classifier">array (n_samples, n_params)</span></dt><dd><p>Selected new training point(s).</p> +</dd> +</dl> +</section> +</dd></dl> + +<dl class="py method"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.dual_annealing"> +<span class="sig-name descname"><span class="pre">dual_annealing</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">method</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">Bounds</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sigma2Dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">Run_No</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbose</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.dual_annealing" title="Link to this definition">¶</a></dt> +<dd><p>Exploration algorithm to find the optimum parameter space.</p> +<section id="id1"> +<h2>Parameters<a class="headerlink" href="#id1" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>method<span class="classifier">string</span></dt><dd><p>Exploitation method: <cite>VarOptDesign</cite>, <cite>BayesActDesign</cite> and +<cite>BayesOptDesign</cite>.</p> +</dd> +</dl> +<p># TODO: BayesActDesign has no corresponding function call in this function! +Bounds : list of tuples</p> +<blockquote> +<div><p>List of lower and upper boundaries of parameters.</p> +</div></blockquote> +<dl class="simple"> +<dt>sigma2Dict<span class="classifier">dict</span></dt><dd><p>A dictionary containing the measurement errors (sigma^2).</p> +</dd> +</dl> +<p>var : unknown +Run_No : int</p> +<blockquote> +<div><p>Run number.</p> +</div></blockquote> +<dl class="simple"> +<dt>verbose<span class="classifier">bool, optional</span></dt><dd><p>Print out a summary. The default is False.</p> +</dd> +</dl> +</section> +<section id="id2"> +<h2>Returns<a class="headerlink" href="#id2" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>Run_No<span class="classifier">int</span></dt><dd><p>Run number.</p> +</dd> +<dt>array</dt><dd><p>Optimial candidate.</p> +</dd> +</dl> +</section> +</dd></dl> + +<dl class="py method"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.run_util_func"> +<span class="sig-name descname"><span class="pre">run_util_func</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">method</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">candidates</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">index</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sigma2Dict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">X_MC</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.run_util_func" title="Link to this definition">¶</a></dt> +<dd><p>Runs the utility function based on the given method.</p> +<section id="id3"> +<h2>Parameters<a class="headerlink" href="#id3" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>method<span class="classifier">string</span></dt><dd><p>Exploitation method: <cite>VarOptDesign</cite>, <cite>BayesActDesign</cite> and +<cite>BayesOptDesign</cite>.</p> +</dd> +<dt>candidates<span class="classifier">array of shape (n_samples, n_params)</span></dt><dd><p>All candidate parameter sets.</p> +</dd> +<dt>index<span class="classifier">int</span></dt><dd><p>ExpDesign index.</p> +</dd> +<dt>sigma2Dict<span class="classifier">dict, optional</span></dt><dd><p>A dictionary containing the measurement errors (sigma^2). The +default is None.</p> +</dd> +<dt>var<span class="classifier">string, optional</span></dt><dd><p>Utility function. The default is None.</p> +</dd> +<dt>X_MC<span class="classifier">TYPE, optional</span></dt><dd><p>DESCRIPTION. The default is None.</p> +</dd> +</dl> +</section> +<section id="id4"> +<h2>Returns<a class="headerlink" href="#id4" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>index<span class="classifier">TYPE</span></dt><dd><p>DESCRIPTION.</p> +</dd> +<dt>List</dt><dd><p>Scores.</p> +</dd> +</dl> +</section> +</dd></dl> + +<dl class="py method"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.start_seqdesign"> +<span class="sig-name descname"><span class="pre">start_seqdesign</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">→</span> <span class="sig-return-typehint"><span class="pre">None</span></span></span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.start_seqdesign" title="Link to this definition">¶</a></dt> +<dd><p>Do all the preparations that need to be run before the actual training</p> +<section id="id5"> +<h2>Returns<a class="headerlink" href="#id5" title="Link to this heading">¶</a></h2> +<p>None</p> +</section> +</dd></dl> + +<dl class="py method"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.tradeoff_weights"> +<span class="sig-name descname"><span class="pre">tradeoff_weights</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">tradeoff_scheme</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">old_EDX</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">old_EDY</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.tradeoff_weights" title="Link to this definition">¶</a></dt> +<dd><p>Calculates weights for exploration scores based on the requested +scheme: <cite>None</cite>, <cite>equal</cite>, <cite>epsilon-decreasing</cite> and <cite>adaptive</cite>.</p> +<p><cite>None</cite>: No exploration. +<cite>equal</cite>: Same weights for exploration and exploitation scores. +<cite>epsilon-decreasing</cite>: Start with more exploration and increase the</p> +<blockquote> +<div><p>influence of exploitation along the way with an exponential decay +function</p> +</div></blockquote> +<dl class="simple"> +<dt><cite>adaptive</cite>: An adaptive method based on:</dt><dd><p>Liu, Haitao, Jianfei Cai, and Yew-Soon Ong. “An adaptive sampling +approach for Kriging metamodeling by maximizing expected prediction +error.†Computers & Chemical Engineering 106 (2017): 171-182.</p> +</dd> +</dl> +<section id="id6"> +<h2>Parameters<a class="headerlink" href="#id6" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>tradeoff_scheme<span class="classifier">string</span></dt><dd><p>Trade-off scheme for exloration and exploitation scores.</p> +</dd> +<dt>old_EDX<span class="classifier">array (n_samples, n_params)</span></dt><dd><p>Old experimental design (training points).</p> +</dd> +<dt>old_EDY<span class="classifier">dict</span></dt><dd><p>Old model responses (targets).</p> +</dd> +</dl> +</section> +<section id="id7"> +<h2>Returns<a class="headerlink" href="#id7" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>exploration_weight<span class="classifier">float</span></dt><dd><p>Exploration weight.</p> +</dd> +<dt>exploitation_weight: float</dt><dd><p>Exploitation weight.</p> +</dd> +</dl> +</section> +</dd></dl> + +<dl class="py method"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_AlphOptDesign"> +<span class="sig-name descname"><span class="pre">util_AlphOptDesign</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">candidates</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'D-Opt'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_AlphOptDesign" title="Link to this definition">¶</a></dt> +<dd><p>Enriches the Experimental design with the requested alphabetic +criterion based on exploring the space with number of sampling points.</p> +<p>Ref: Hadigol, M., & Doostan, A. (2018). Least squares polynomial chaos +expansion: A review of sampling strategies., Computer Methods in +Applied Mechanics and Engineering, 332, 382-407.</p> +<section id="arguments"> +<h2>Arguments<a class="headerlink" href="#arguments" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>candidates<span class="classifier">int?</span></dt><dd><p>Number of candidate points to be searched</p> +</dd> +<dt>var<span class="classifier">string</span></dt><dd><p>Alphabetic optimality criterion</p> +</dd> +</dl> +</section> +<section id="id8"> +<h2>Returns<a class="headerlink" href="#id8" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>X_new<span class="classifier">array of shape (1, n_params)</span></dt><dd><p>The new sampling location in the input space.</p> +</dd> +</dl> +</section> +</dd></dl> + +<dl class="py method"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianActiveDesign"> +<span class="sig-name descname"><span class="pre">util_BayesianActiveDesign</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">y_hat</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">std</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sigma2Dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'DKL'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianActiveDesign" title="Link to this definition">¶</a></dt> +<dd><p>Computes scores based on Bayesian active design criterion (var).</p> +<p>It is based on the following paper: +Oladyshkin, Sergey, Farid Mohammadi, Ilja Kroeker, and Wolfgang Nowak. +“Bayesian3 active learning for the gaussian process emulator using +information theory.†Entropy 22, no. 8 (2020): 890.</p> +<section id="id9"> +<h2>Parameters<a class="headerlink" href="#id9" title="Link to this heading">¶</a></h2> +<p>y_hat : unknown +std : unknown +sigma2Dict : dict</p> +<blockquote> +<div><p>A dictionary containing the measurement errors (sigma^2).</p> +</div></blockquote> +<dl class="simple"> +<dt>var<span class="classifier">string, optional</span></dt><dd><p>BAL design criterion. The default is ‘DKL’.</p> +</dd> +</dl> +</section> +<section id="id10"> +<h2>Returns<a class="headerlink" href="#id10" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>float</dt><dd><p>Score.</p> +</dd> +</dl> +</section> +</dd></dl> + +<dl class="py method"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianDesign"> +<span class="sig-name descname"><span class="pre">util_BayesianDesign</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">X_can</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">X_MC</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sigma2Dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">var</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'DKL'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianDesign" title="Link to this definition">¶</a></dt> +<dd><p>Computes scores based on Bayesian sequential design criterion (var).</p> +<section id="id11"> +<h2>Parameters<a class="headerlink" href="#id11" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>X_can<span class="classifier">array of shape (n_samples, n_params)</span></dt><dd><p>Candidate samples.</p> +</dd> +</dl> +<p>X_MC : unknown +sigma2Dict : dict</p> +<blockquote> +<div><p>A dictionary containing the measurement errors (sigma^2).</p> +</div></blockquote> +<dl class="simple"> +<dt>var<span class="classifier">string, optional</span></dt><dd><p>Bayesian design criterion. The default is ‘DKL’.</p> +</dd> +</dl> +</section> +<section id="id12"> +<h2>Returns<a class="headerlink" href="#id12" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>float</dt><dd><p>Score.</p> +</dd> +</dl> +</section> +</dd></dl> + +<dl class="py method"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_VarBasedDesign"> +<span class="sig-name descname"><span class="pre">util_VarBasedDesign</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">X_can</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">index</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">util_func</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'Entropy'</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_VarBasedDesign" title="Link to this definition">¶</a></dt> +<dd><p>Computes the exploitation scores based on: +active learning MacKay(ALM) and active learning Cohn (ALC) +Paper: Sequential Design with Mutual Information for Computer +Experiments (MICE): Emulation of a Tsunami Model by Beck and Guillas +(2016)</p> +<section id="id13"> +<h2>Parameters<a class="headerlink" href="#id13" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>X_can<span class="classifier">array of shape (n_samples, n_params)</span></dt><dd><p>Candidate samples.</p> +</dd> +<dt>index<span class="classifier">int</span></dt><dd><p>Model output index.</p> +</dd> +<dt>util_func<span class="classifier">string, optional</span></dt><dd><p>Exploitation utility function. The default is ‘Entropy’.</p> +</dd> +</dl> +</section> +<section id="id14"> +<h2>Returns<a class="headerlink" href="#id14" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>float</dt><dd><p>Score.</p> +</dd> +</dl> +</section> +</dd></dl> + +</dd></dl> + +</section> + + </article> + </div> + <footer> + + <div class="related-pages"> + <a class="next-page" href="bayesvalidrox.surrogate_models.surrogate_models.html"> + <div class="page-info"> + <div class="context"> + <span>Next</span> + </div> + <div class="title">bayesvalidrox.surrogate_models.surrogate_models</div> + </div> + <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> + </a> + <a class="prev-page" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html"> + <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> + <div class="page-info"> + <div class="context"> + <span>Previous</span> + </div> + + <div 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class="docutils literal notranslate"><span class="pre">SequentialDesign</span></code></a><ul> +<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.__init__"><code class="docutils literal notranslate"><span class="pre">SequentialDesign.__init__()</span></code></a></li> +<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.choose_next_sample"><code class="docutils literal notranslate"><span class="pre">SequentialDesign.choose_next_sample()</span></code></a></li> +<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.dual_annealing"><code class="docutils literal notranslate"><span class="pre">SequentialDesign.dual_annealing()</span></code></a></li> +<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.run_util_func"><code class="docutils literal notranslate"><span class="pre">SequentialDesign.run_util_func()</span></code></a></li> +<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.start_seqdesign"><code class="docutils literal notranslate"><span class="pre">SequentialDesign.start_seqdesign()</span></code></a></li> +<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.tradeoff_weights"><code class="docutils literal notranslate"><span class="pre">SequentialDesign.tradeoff_weights()</span></code></a></li> +<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_AlphOptDesign"><code class="docutils literal notranslate"><span class="pre">SequentialDesign.util_AlphOptDesign()</span></code></a></li> +<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianActiveDesign"><code class="docutils literal notranslate"><span class="pre">SequentialDesign.util_BayesianActiveDesign()</span></code></a></li> +<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianDesign"><code class="docutils literal notranslate"><span class="pre">SequentialDesign.util_BayesianDesign()</span></code></a></li> +<li><a class="reference internal" href="#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_VarBasedDesign"><code class="docutils literal notranslate"><span class="pre">SequentialDesign.util_VarBasedDesign()</span></code></a></li> +</ul> +</li> +</ul> +</li> +</ul> + + </div> + </div> + </div> + + + </aside> + </div> +</div><script src="../_static/documentation_options.js?v=4ebf8126"></script> + <script src="../_static/doctools.js?v=9a2dae69"></script> + <script src="../_static/sphinx_highlight.js?v=dc90522c"></script> + <script src="../_static/scripts/furo.js?v=32e29ea5"></script> + </body> +</html> \ No newline at end of file diff --git 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</button> + </div> + <label class="toc-overlay-icon toc-content-icon" for="__toc"> + <div class="visually-hidden">Toggle table of contents sidebar</div> + <i class="icon"><svg><use href="#svg-toc"></use></svg></i> + </label> + </div> + <article role="main"> + <section id="bayesvalidrox-surrogate-models-sequential-design-hellinger-distance"> +<h1>bayesvalidrox.surrogate_models.sequential_design.hellinger_distance<a class="headerlink" href="#bayesvalidrox-surrogate-models-sequential-design-hellinger-distance" title="Link to this heading">¶</a></h1> +<dl class="py function"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance"> +<span class="sig-prename descclassname"><span class="pre">bayesvalidrox.surrogate_models.sequential_design.</span></span><span class="sig-name descname"><span class="pre">hellinger_distance</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">P</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">Q</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.hellinger_distance" title="Link to this definition">¶</a></dt> +<dd><p>Hellinger distance between two continuous distributions.</p> +<p>The maximum distance 1 is achieved when P assigns probability zero to +every set to which Q assigns a positive probability, and vice versa. +0 (identical) and 1 (maximally different)</p> +<section id="parameters"> +<h2>Parameters<a class="headerlink" href="#parameters" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>P<span class="classifier">array</span></dt><dd><p>Reference likelihood.</p> +</dd> +<dt>Q<span class="classifier">array</span></dt><dd><p>Estimated likelihood.</p> +</dd> +</dl> +</section> +<section id="returns"> +<h2>Returns<a class="headerlink" href="#returns" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>float</dt><dd><p>Hellinger distance of two distributions.</p> +</dd> +</dl> +</section> +</dd></dl> + +</section> + + </article> + </div> + <footer> + + <div class="related-pages"> + <a class="next-page" href="bayesvalidrox.surrogate_models.sequential_design.logpdf.html"> + <div class="page-info"> + <div class="context"> + <span>Next</span> + </div> + <div class="title">bayesvalidrox.surrogate_models.sequential_design.logpdf</div> + </div> + <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> + </a> + <a class="prev-page" href="bayesvalidrox.surrogate_models.sequential_design.html"> + <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> + <div class="page-info"> + <div class="context"> + <span>Previous</span> + </div> + + <div class="title">bayesvalidrox.surrogate_models.sequential_design</div> + + </div> + </a> + </div> + <div class="bottom-of-page"> + <div class="left-details"> + <div class="copyright"> + Copyright © 2023, Farid 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+<tbody> +<tr class="row-odd"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html#bayesvalidrox.surrogate_models.sequential_design.hellinger_distance" title="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance"><code class="xref py py-obj docutils literal notranslate"><span class="pre">hellinger_distance</span></code></a>(P, Q)</p></td> +<td><p>Hellinger distance between two continuous distributions.</p></td> +</tr> +<tr class="row-even"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.logpdf.html#bayesvalidrox.surrogate_models.sequential_design.logpdf" title="bayesvalidrox.surrogate_models.sequential_design.logpdf"><code class="xref py py-obj docutils literal notranslate"><span class="pre">logpdf</span></code></a>(x, mean, cov)</p></td> +<td><p>Computes the likelihood based on a multivariate normal distribution.</p></td> +</tr> +<tr class="row-odd"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html#bayesvalidrox.surrogate_models.sequential_design.subdomain" title="bayesvalidrox.surrogate_models.sequential_design.subdomain"><code class="xref py py-obj docutils literal notranslate"><span class="pre">subdomain</span></code></a>(Bounds, n_new_samples)</p></td> +<td><p>Divides a domain defined by Bounds into subdomains.</p></td> +</tr> +</tbody> +</table> +</div> +<p class="rubric">Classes</p> +<div class="table-wrapper autosummary longtable docutils container"> +<table class="autosummary longtable docutils align-default"> +<tbody> +<tr class="row-odd"><td><p><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign" title="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign"><code class="xref py py-obj docutils literal notranslate"><span class="pre">SequentialDesign</span></code></a>(MetaMod, Model, ExpDes, engine)</p></td> +<td><p>Contains options for choosing the next training sample iteratively.</p></td> +</tr> +</tbody> +</table> +</div> +</section> + + </article> + </div> + <footer> + + <div class="related-pages"> + <a class="next-page" href="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html"> + <div class="page-info"> + <div class="context"> + <span>Next</span> + </div> + <div class="title">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</div> + </div> + <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> + </a> + <a class="prev-page" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html"> + <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> + <div class="page-info"> + <div class="context"> + <span>Previous</span> + </div> + + <div 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descname"><span class="pre">logpdf</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">x</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">mean</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cov</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.logpdf" title="Link to this definition">¶</a></dt> +<dd><p>Computes the likelihood based on a multivariate normal distribution.</p> +<section id="parameters"> +<h2>Parameters<a class="headerlink" href="#parameters" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>x<span class="classifier">TYPE</span></dt><dd><p>DESCRIPTION.</p> +</dd> +<dt>mean<span class="classifier">array_like</span></dt><dd><p>Observation data.</p> +</dd> +<dt>cov<span class="classifier">2d array</span></dt><dd><p>Covariance matrix of the distribution.</p> +</dd> +</dl> +</section> +<section id="returns"> +<h2>Returns<a class="headerlink" href="#returns" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>log_lik<span class="classifier">float</span></dt><dd><p>Log likelihood.</p> +</dd> +</dl> +</section> +</dd></dl> + +</section> + + </article> + </div> + <footer> + + <div class="related-pages"> + <a class="next-page" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html"> + <div class="page-info"> + <div class="context"> + <span>Next</span> + </div> + <div class="title">bayesvalidrox.surrogate_models.sequential_design.subdomain</div> + </div> + <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> + </a> + <a class="prev-page" href="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html"> + <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> + <div class="page-info"> + <div class="context"> + <span>Previous</span> + </div> + + <div 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+<h1>bayesvalidrox.surrogate_models.sequential_design.subdomain<a class="headerlink" href="#bayesvalidrox-surrogate-models-sequential-design-subdomain" title="Link to this heading">¶</a></h1> +<dl class="py function"> +<dt class="sig sig-object py" id="bayesvalidrox.surrogate_models.sequential_design.subdomain"> +<span class="sig-prename descclassname"><span class="pre">bayesvalidrox.surrogate_models.sequential_design.</span></span><span class="sig-name descname"><span class="pre">subdomain</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">Bounds</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n_new_samples</span></span></em><span class="sig-paren">)</span><a class="headerlink" href="#bayesvalidrox.surrogate_models.sequential_design.subdomain" title="Link to this definition">¶</a></dt> +<dd><p>Divides a domain defined by Bounds into subdomains.</p> +<section id="parameters"> +<h2>Parameters<a class="headerlink" href="#parameters" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>Bounds<span class="classifier">list of tuples</span></dt><dd><p>List of lower and upper bounds.</p> +</dd> +<dt>n_new_samples<span class="classifier">int</span></dt><dd><p>Number of samples to divide the domain for.</p> +</dd> +</dl> +</section> +<section id="returns"> +<h2>Returns<a class="headerlink" href="#returns" title="Link to this heading">¶</a></h2> +<dl class="simple"> +<dt>Subdomains<span class="classifier">List of tuples of tuples</span></dt><dd><p>Each tuple of tuples divides one set of bounds into n_new_samples parts.</p> +</dd> +</dl> +</section> +</dd></dl> + +</section> + + </article> + </div> + <footer> + + <div class="related-pages"> + <a class="next-page" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html"> + <div class="page-info"> + <div class="context"> + <span>Next</span> + </div> + <div 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b/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.MetaModel.html index b19b796849a7a1500e42151901841e84e4dec613..267d6832f934dddcaae6157633d84d935f047f56 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.MetaModel.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.MetaModel.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 current has-children"><a class="reference internal" 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class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 current has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input 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a/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html b/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html index 85883cb847cf1c65e2311dbcf9b1767ee88fd7f9..92e99cf2965a0bd1e96779cba32b267f4c7de336 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 current has-children"><a 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href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 current has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul class="current"> <li class="toctree-l5 current current-page"><a class="current reference internal" href="#">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html b/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html index 4a66eb692ad6d7454d221ba2957f44131c9a5fe9..65ecb8ddd51cf52c32032234661dd25c196c4458 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 current has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul class="current"> +<li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" 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href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 current has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul class="current"> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5 current current-page"><a class="current reference internal" href="#">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html b/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html index a38aa4e631828e0e30210cc27184f01c7b6072f1..1024f6651b3de9e7bc77405c99b52e48f961d958 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 current has-children"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul class="current"> +<li class="toctree-l4 has-children"><a class="reference internal" 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href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5 current current-page"><a class="current reference internal" href="#">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html b/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html index bb5eaba6c656f8899f104b1832777061be31f5ed..a94aedc738ffbd78d80c56305c139761b2e99f98 100644 --- a/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html +++ b/public/_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html @@ -3,7 +3,7 @@ <head><meta charset="utf-8"/> <meta name="viewport" content="width=device-width,initial-scale=1"/> <meta name="color-scheme" content="light dark"><meta name="generator" content="Docutils 0.18.1: http://docutils.sourceforge.net/" /> -<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html" /><link rel="prev" title="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html" /> +<link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error" href="bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html" /><link rel="prev" 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href="bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 current has-children current-page"><a class="current reference internal" 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href="bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 current has-children current-page"><a class="current reference internal" href="#">bayesvalidrox.surrogate_models.surrogate_models</a><input checked="" class="toctree-checkbox" id="toctree-checkbox-29" 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<a class="prev-page" href="bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html"> + <a class="prev-page" href="bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html"> <svg class="furo-related-icon"><use href="#svg-arrow-right"></use></svg> <div class="page-info"> <div class="context"> <span>Previous</span> </div> - <div class="title">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</div> + <div class="title">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</div> </div> </a> diff --git a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.engine.Engine.rst.txt b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.engine.Engine.rst.txt index 21a9e34806d5b3671103d4a334fcdfd92880c1bc..00a9dcd93acecc50c3c0722ecd71d96cd116eab9 100644 --- a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.engine.Engine.rst.txt +++ b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.engine.Engine.rst.txt @@ -17,19 +17,11 @@ bayesvalidrox.surrogate\_models.engine.Engine .. autosummary:: ~Engine.__init__ - ~Engine.choose_next_sample - ~Engine.dual_annealing ~Engine.eval_metamodel - ~Engine.run_util_func ~Engine.start_engine - ~Engine.tradeoff_weights ~Engine.train_normal ~Engine.train_seq_design ~Engine.train_sequential - ~Engine.util_AlphOptDesign - ~Engine.util_BayesianActiveDesign - ~Engine.util_BayesianDesign - ~Engine.util_VarBasedDesign diff --git a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.engine.rst.txt b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.engine.rst.txt index 43998aeade22fc4feb5c04282973e72a1ae1d72e..a73ff3387b3ede34a272edb2f2b95c7730c9d2a6 100644 --- a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.engine.rst.txt +++ b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.engine.rst.txt @@ -9,15 +9,6 @@ bayesvalidrox.surrogate\_models.engine - .. rubric:: Functions - - .. autosummary:: - :toctree: - - hellinger_distance - logpdf - subdomain - diff --git a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.rst.txt b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.rst.txt index fbd49ba297a2f28c516c5818e5f844d545986446..19ea8468254de7631be7b80500ebcb44dabf033a 100644 --- a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.rst.txt +++ b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.rst.txt @@ -1,4 +1,4 @@ -bayesvalidrox.surrogate\_models +bayesvalidrox.surrogate\_models =============================== .. automodule:: bayesvalidrox.surrogate_models @@ -41,5 +41,6 @@ bayesvalidrox.surrogate\_models bayesvalidrox.surrogate_models.orthogonal_matching_pursuit bayesvalidrox.surrogate_models.reg_fast_ard bayesvalidrox.surrogate_models.reg_fast_laplace + bayesvalidrox.surrogate_models.sequential_design bayesvalidrox.surrogate_models.surrogate_models diff --git a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.rst.txt b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.rst.txt new file mode 100644 index 0000000000000000000000000000000000000000..85bf390ce314ff2dcc87557ffd5f13404782ca47 --- /dev/null +++ b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.rst.txt @@ -0,0 +1,34 @@ +bayesvalidrox.surrogate\_models.sequential\_design.SequentialDesign +=================================================================== + +.. currentmodule:: bayesvalidrox.surrogate_models.sequential_design + +.. autoclass:: SequentialDesign + :members: + :show-inheritance: + :inherited-members: + + + .. automethod:: __init__ + + + .. rubric:: Methods + + .. autosummary:: + + ~SequentialDesign.__init__ + ~SequentialDesign.choose_next_sample + ~SequentialDesign.dual_annealing + ~SequentialDesign.run_util_func + ~SequentialDesign.start_seqdesign + ~SequentialDesign.tradeoff_weights + ~SequentialDesign.util_AlphOptDesign + ~SequentialDesign.util_BayesianActiveDesign + ~SequentialDesign.util_BayesianDesign + ~SequentialDesign.util_VarBasedDesign + + + + + + \ No newline at end of file diff --git a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.rst.txt b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.rst.txt new file mode 100644 index 0000000000000000000000000000000000000000..e242998b25145fd1d0320e10f4ebc1503f00a302 --- /dev/null +++ b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.rst.txt @@ -0,0 +1,6 @@ +bayesvalidrox.surrogate\_models.sequential\_design.hellinger\_distance +====================================================================== + +.. currentmodule:: bayesvalidrox.surrogate_models.sequential_design + +.. autofunction:: hellinger_distance \ No newline at end of file diff --git a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.rst.txt b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.rst.txt new file mode 100644 index 0000000000000000000000000000000000000000..124f9a6d588f053034144a510db677ae96b91da6 --- /dev/null +++ b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.rst.txt @@ -0,0 +1,6 @@ +bayesvalidrox.surrogate\_models.sequential\_design.logpdf +========================================================= + +.. currentmodule:: bayesvalidrox.surrogate_models.sequential_design + +.. autofunction:: logpdf \ No newline at end of file diff --git a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.rst.txt b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.rst.txt new file mode 100644 index 0000000000000000000000000000000000000000..2e13f6766e5c85e70fae2f7087baaf350a38b095 --- /dev/null +++ b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.rst.txt @@ -0,0 +1,40 @@ +bayesvalidrox.surrogate\_models.sequential\_design +================================================== + +.. automodule:: bayesvalidrox.surrogate_models.sequential_design + + + + + + + + .. rubric:: Functions + + .. autosummary:: + :toctree: + + hellinger_distance + logpdf + subdomain + + + + + + .. rubric:: Classes + + .. autosummary:: + :toctree: + :template: custom-class-template.rst + + SequentialDesign + + + + + + + + + diff --git a/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.rst.txt b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.rst.txt new file mode 100644 index 0000000000000000000000000000000000000000..abef419d34e8f934f2fff5d6d4573313336c9ca6 --- /dev/null +++ b/public/_sources/_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.rst.txt @@ -0,0 +1,6 @@ +bayesvalidrox.surrogate\_models.sequential\_design.subdomain +============================================================ + +.. currentmodule:: bayesvalidrox.surrogate_models.sequential_design + +.. autofunction:: subdomain \ No newline at end of file diff --git a/public/_sources/bayes_description.rst.txt b/public/_sources/bayes_description.rst.txt index 1c72a3e9987ca89da79132dece7ba4626a218e96..0cb36d10f808a92e14d29abc01b9a7fd6883466b 100644 --- a/public/_sources/bayes_description.rst.txt +++ b/public/_sources/bayes_description.rst.txt @@ -87,4 +87,35 @@ Then we run the inference. >>> BayesObj.create_inference() -If the output directory ``BayesObj.out_dir`` is not set otherwise, the outputs are written into the folder `` \ No newline at end of file +If the output directory ``BayesObj.out_dir`` is not set otherwise, the outputs are written into the folder ``Outputs_Bayes_model_Calib``. +This folder includes the posterior distribution of the input parameters, as well as the predictions resulting from the mean of the posterior. +For inference with MCMC, chain diagnostics are also written out in the console. + +.. container:: twocol + + .. container:: leftside + + .. code-block:: py + + ---------------Posterior diagnostics--------------- + Mean auto-correlation time: 2.057 + Thin: 1 + Burn-in: 4 + Flat chain shape: (13380, 1) + Mean acceptance fraction*: 0.752 + Gelman-Rubin Test**: [1.001] + + * This value must lay between 0.234 and 0.5. + ** These values must be smaller than 1.1. + -------------------------------------------------- + + .. container:: rightside + + .. image:: ../../examples/user_guide/Outputs_Bayes_model_Calib/Posterior_Dist_model_emulator.pdf + :width: 400 + :alt: Posterior distribution of the input parameter + + .. image:: ../../examples/user_guide/Outputs_Bayes_model_Calib/Post_Prior_Perd_model_emulator_A.pdf + :width: 400 + :alt: Comparison of posterior prediction to the observation + \ No newline at end of file diff --git a/public/_sources/bmc_description.rst.txt b/public/_sources/bmc_description.rst.txt index 10e73bd1e819ad67df4fe48247a2bcf26fe698a7..2ef20019c7d548ee3f308b393915d7e4028a24bd 100644 --- a/public/_sources/bmc_description.rst.txt +++ b/public/_sources/bmc_description.rst.txt @@ -1,7 +1,83 @@ Bayesian multi-model comparison ******************************* +.. container:: twocol -.. image:: ../diagrams/bayesian_model_comparison.png - :width: 400 - :alt: UML diagram for classes related to Bayesian multi-model comparison. + .. container:: leftside + + Bayesvalidrox provides three distinct methods to compare sets of models against each other given some observation of the outputs, Bayes' Factors, model weights and confusion matrices. + These are contained within the class :any:`bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison` and can be called one-at-a-time with their respective functions, or consecutively with the function ``model_comparison_all()``. + + + .. container:: rightside + + .. image:: ../diagrams/bayesian_model_comparison.png + :width: 400 + :alt: UML diagram for classes related to Bayesian multi-model comparison. + + +Example +======= +To perform model comparison, we first need to define the set of competing models. +For this, we create an additional model in the file ``model2.py`` based on the example model from :any:`model_description`. + +>>> def model2(samples, x_values): +>>> poly = samples[0]*np.power(x_values, 3) +>>> outputs = {'A': poly, 'x_values': x_values} +>>> return outputs + +Then we can build another surrogate for this model, following the same code as for the surrogate in :any:`surrogate_description`. + +>>> Model2 = PyLinkForwardModel() +>>> Model2.link_type = 'Function' +>>> Model2.py_file = 'model2' +>>> Model2.name = 'model2' +>>> Model2.Output.names = ['A'] +>>> Model2.func_args = {'x_values': x_values} +>>> Model2.store = False + +>>> MetaMod2 = MetaModel(Inputs) +>>> MetaMod2.meta_model_type = 'aPCE' +>>> MetaMod2.pce_reg_method = 'FastARD' +>>> MetaMod2.pce_deg = 3 +>>> MetaMod2.pce_q_norm = 1 + +>>> ExpDesign2 = ExpDesigns(Inputs) +>>> ExpDesign2.n_init_samples = 30 +>>> ExpDesign2.sampling_method = 'random' + +>>> Engine_2 = Engine(MetaMod2, Model2, ExpDesign2) +>>> Engine_2.train_normal() + +To perform model comparison we use the class :any:`bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison`. + +>>> from bayesvalidrox import BayesModelComparison` + +We collect the engines that should be compared in a dictionary, and assign them names. + +>>> meta_models = { +>>> "linear": Engine_, +>>> "degthree": Engine_2 +>>> } + +Then we create an object of class ``BayesModelComparison``. + +>>> BayesOpts = BayesModelComparison() + +As the comparison uses the class :any:`bayesvalidrox.bayes_inference.bayes_inference.BayesInference`, we can also set the properties for this class as well. +These are collected in a dictionary and given to the function calls that perform the model comparison. +In this example we use the following settings. + +>>> opts_bootstrap = { +>>> "bootstrap": True, +>>> "n_samples": 100, +>>> "Discrepancy": DiscrepancyOpts, +>>> "emulator": True, +>>> "plot_post_pred": False +>>> } + +Now we can run the full model comparison. + +>>> output_dict = BayesOpts.model_comparison_all(meta_models, opts_bootstrap) + +The created plots are saved in the folder `Outputs_Comparison`. diff --git a/public/al_description.html b/public/al_description.html index e3cde5ecdeba4d96aa5f5ae5687880f353b4cfdb..32fda4d908a509213ce714a451c6dfffb754ad90 100644 --- a/public/al_description.html +++ b/public/al_description.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" 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href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" 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href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/analyticalfunction.html b/public/analyticalfunction.html index 799f0350ab63fcff73326e688d496645156564eb..c1cec1cff008fbaa53c60fb97e26ebacb9d4c15f 100644 --- a/public/analyticalfunction.html +++ b/public/analyticalfunction.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 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href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/api.html b/public/api.html index 7f918265aaa46ff4fce912683b613ad2fe00c692..61edd32a2b5a5effd7b68528c7481646baa1bcad 100644 --- a/public/api.html +++ b/public/api.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" 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href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/bayes_description.html b/public/bayes_description.html index 7a933926610a356faf87a0da0f856ea8e2340d7b..09045e6aa2abfa048df071fa6926f3873b3f5a18 100644 --- a/public/bayes_description.html +++ b/public/bayes_description.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> @@ -421,7 +425,30 @@ For this example we use the python package <code class="docutils literal notrans <div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">BayesObj</span><span class="o">.</span><span class="n">create_inference</span><span class="p">()</span> </pre></div> </div> -<p>If the output directory <code class="docutils literal notranslate"><span class="pre">BayesObj.out_dir</span></code> is not set otherwise, the outputs are written into the folder ``</p> +<p>If the output directory <code class="docutils literal notranslate"><span class="pre">BayesObj.out_dir</span></code> is not set otherwise, the outputs are written into the folder <code class="docutils literal notranslate"><span class="pre">Outputs_Bayes_model_Calib</span></code>. +This folder includes the posterior distribution of the input parameters, as well as the predictions resulting from the mean of the posterior. +For inference with MCMC, chain diagnostics are also written out in the console.</p> +<div class="twocol docutils container"> +<div class="leftside docutils container"> +<div class="highlight-py notranslate"><div class="highlight"><pre><span></span><span class="o">---------------</span><span class="n">Posterior</span> <span class="n">diagnostics</span><span class="o">---------------</span> +<span class="n">Mean</span> <span class="n">auto</span><span class="o">-</span><span class="n">correlation</span> <span class="n">time</span><span class="p">:</span> <span class="mf">2.057</span> +<span class="n">Thin</span><span class="p">:</span> <span class="mi">1</span> +<span class="n">Burn</span><span class="o">-</span><span class="ow">in</span><span class="p">:</span> <span class="mi">4</span> +<span class="n">Flat</span> <span class="n">chain</span> <span class="n">shape</span><span class="p">:</span> <span class="p">(</span><span class="mi">13380</span><span class="p">,</span> <span class="mi">1</span><span class="p">)</span> +<span class="n">Mean</span> <span class="n">acceptance</span> <span class="n">fraction</span><span class="o">*</span><span class="p">:</span> <span class="mf">0.752</span> +<span class="n">Gelman</span><span class="o">-</span><span class="n">Rubin</span> <span class="n">Test</span><span class="o">**</span><span class="p">:</span> <span class="p">[</span><span class="mf">1.001</span><span class="p">]</span> + +<span class="o">*</span> <span class="n">This</span> <span class="n">value</span> <span class="n">must</span> <span class="n">lay</span> <span class="n">between</span> <span class="mf">0.234</span> <span class="ow">and</span> <span class="mf">0.5</span><span class="o">.</span> +<span class="o">**</span> <span class="n">These</span> <span class="n">values</span> <span class="n">must</span> <span class="n">be</span> <span class="n">smaller</span> <span class="n">than</span> <span class="mf">1.1</span><span class="o">.</span> +<span class="o">--------------------------------------------------</span> +</pre></div> +</div> +</div> +<div class="rightside docutils container"> +<a class="reference internal image-reference" href="_images/Posterior_Dist_model_emulator.pdf"><img alt="Posterior distribution of the input parameter" src="_images/Posterior_Dist_model_emulator.pdf" style="width: 400px;" /></a> +<a class="reference internal image-reference" href="_images/Post_Prior_Perd_model_emulator_A.pdf"><img alt="Comparison of posterior prediction to the observation" src="_images/Post_Prior_Perd_model_emulator_A.pdf" style="width: 400px;" /></a> +</div> +</div> </section> </section> diff --git a/public/beam.html b/public/beam.html index 64c4a4c02961b651df6c1cc9c11ae1648000a38b..eca8e84faaf8188af80a871655663a39b438d0e9 100644 --- a/public/beam.html +++ b/public/beam.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li 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href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> @@ -330,7 +334,7 @@ <svg class="theme-icon-when-light"><use href="#svg-sun"></use></svg> </button> </div> - <label class="toc-overlay-icon toc-content-icon no-toc" for="__toc"> + <label class="toc-overlay-icon toc-content-icon" for="__toc"> <div class="visually-hidden">Toggle table of contents sidebar</div> <i class="icon"><svg><use href="#svg-toc"></use></svg></i> </label> @@ -338,7 +342,84 @@ <article role="main"> <section id="bayesian-multi-model-comparison"> <h1>Bayesian multi-model comparison<a class="headerlink" href="#bayesian-multi-model-comparison" title="Link to this heading">¶</a></h1> +<div class="twocol docutils container"> +<div class="leftside docutils container"> +<p>Bayesvalidrox provides three distinct methods to compare sets of models against each other given some observation of the outputs, Bayes’ Factors, model weights and confusion matrices. +These are contained within the class <a class="reference internal" href="_autosummary/bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison.html#bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison" title="bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison"><code class="xref any py py-class docutils literal notranslate"><span class="pre">bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison</span></code></a> and can be called one-at-a-time with their respective functions, or consecutively with the function <code class="docutils literal notranslate"><span class="pre">model_comparison_all()</span></code>.</p> +</div> +<div class="rightside docutils container"> <a class="reference internal image-reference" href="_images/bayesian_model_comparison.png"><img alt="UML diagram for classes related to Bayesian multi-model comparison." src="_images/bayesian_model_comparison.png" style="width: 400px;" /></a> +</div> +</div> +<section id="example"> +<h2>Example<a class="headerlink" href="#example" title="Link to this heading">¶</a></h2> +<p>To perform model comparison, we first need to define the set of competing models. +For this, we create an additional model in the file <code class="docutils literal notranslate"><span class="pre">model2.py</span></code> based on the example model from <a class="reference internal" href="model_description.html"><span class="doc">Models</span></a>.</p> +<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="k">def</span> <span class="nf">model2</span><span class="p">(</span><span class="n">samples</span><span class="p">,</span> <span class="n">x_values</span><span class="p">):</span> +<span class="gp">>>> </span> <span class="n">poly</span> <span class="o">=</span> <span class="n">samples</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">*</span><span class="n">np</span><span class="o">.</span><span class="n">power</span><span class="p">(</span><span class="n">x_values</span><span class="p">,</span> <span class="mi">3</span><span class="p">)</span> +<span class="gp">>>> </span> <span class="n">outputs</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'A'</span><span class="p">:</span> <span class="n">poly</span><span class="p">,</span> <span class="s1">'x_values'</span><span class="p">:</span> <span class="n">x_values</span><span class="p">}</span> +<span class="gp">>>> </span> <span class="k">return</span> <span class="n">outputs</span> +</pre></div> +</div> +<p>Then we can build another surrogate for this model, following the same code as for the surrogate in <a class="reference internal" href="surrogate_description.html"><span class="doc">Training surrogate models</span></a>.</p> +<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">Model2</span> <span class="o">=</span> <span class="n">PyLinkForwardModel</span><span class="p">()</span> +<span class="gp">>>> </span><span class="n">Model2</span><span class="o">.</span><span class="n">link_type</span> <span class="o">=</span> <span class="s1">'Function'</span> +<span class="gp">>>> </span><span class="n">Model2</span><span class="o">.</span><span class="n">py_file</span> <span class="o">=</span> <span class="s1">'model2'</span> +<span class="gp">>>> </span><span class="n">Model2</span><span class="o">.</span><span class="n">name</span> <span class="o">=</span> <span class="s1">'model2'</span> +<span class="gp">>>> </span><span class="n">Model2</span><span class="o">.</span><span class="n">Output</span><span class="o">.</span><span class="n">names</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'A'</span><span class="p">]</span> +<span class="gp">>>> </span><span class="n">Model2</span><span class="o">.</span><span class="n">func_args</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'x_values'</span><span class="p">:</span> <span class="n">x_values</span><span class="p">}</span> +<span class="gp">>>> </span><span class="n">Model2</span><span class="o">.</span><span class="n">store</span> <span class="o">=</span> <span class="kc">False</span> +</pre></div> +</div> +<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">MetaMod2</span> <span class="o">=</span> <span class="n">MetaModel</span><span class="p">(</span><span class="n">Inputs</span><span class="p">)</span> +<span class="gp">>>> </span><span class="n">MetaMod2</span><span class="o">.</span><span class="n">meta_model_type</span> <span class="o">=</span> <span class="s1">'aPCE'</span> +<span class="gp">>>> </span><span class="n">MetaMod2</span><span class="o">.</span><span class="n">pce_reg_method</span> <span class="o">=</span> <span class="s1">'FastARD'</span> +<span class="gp">>>> </span><span class="n">MetaMod2</span><span class="o">.</span><span class="n">pce_deg</span> <span class="o">=</span> <span class="mi">3</span> +<span class="gp">>>> </span><span class="n">MetaMod2</span><span class="o">.</span><span class="n">pce_q_norm</span> <span class="o">=</span> <span class="mi">1</span> +</pre></div> +</div> +<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">ExpDesign2</span> <span class="o">=</span> <span class="n">ExpDesigns</span><span class="p">(</span><span class="n">Inputs</span><span class="p">)</span> +<span class="gp">>>> </span><span class="n">ExpDesign2</span><span class="o">.</span><span class="n">n_init_samples</span> <span class="o">=</span> <span class="mi">30</span> +<span class="gp">>>> </span><span class="n">ExpDesign2</span><span class="o">.</span><span class="n">sampling_method</span> <span class="o">=</span> <span class="s1">'random'</span> +</pre></div> +</div> +<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">Engine_2</span> <span class="o">=</span> <span class="n">Engine</span><span class="p">(</span><span class="n">MetaMod2</span><span class="p">,</span> <span class="n">Model2</span><span class="p">,</span> <span class="n">ExpDesign2</span><span class="p">)</span> +<span class="gp">>>> </span><span class="n">Engine_2</span><span class="o">.</span><span class="n">train_normal</span><span class="p">()</span> +</pre></div> +</div> +<p>To perform model comparison we use the class <a class="reference internal" href="_autosummary/bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison.html#bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison" title="bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison"><code class="xref any py py-class docutils literal notranslate"><span class="pre">bayesvalidrox.bayes_inference.bayes_model_comparison.BayesModelComparison</span></code></a>.</p> +<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span>>>> from bayesvalidrox import BayesModelComparison` +</pre></div> +</div> +<p>We collect the engines that should be compared in a dictionary, and assign them names.</p> +<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">meta_models</span> <span class="o">=</span> <span class="p">{</span> +<span class="gp">>>> </span> <span class="s2">"linear"</span><span class="p">:</span> <span class="n">Engine_</span><span class="p">,</span> +<span class="gp">>>> </span> <span class="s2">"degthree"</span><span class="p">:</span> <span class="n">Engine_2</span> +<span class="gp">>>> </span> <span class="p">}</span> +</pre></div> +</div> +<p>Then we create an object of class <code class="docutils literal notranslate"><span class="pre">BayesModelComparison</span></code>.</p> +<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">BayesOpts</span> <span class="o">=</span> <span class="n">BayesModelComparison</span><span class="p">()</span> +</pre></div> +</div> +<p>As the comparison uses the class <a class="reference internal" href="_autosummary/bayesvalidrox.bayes_inference.bayes_inference.BayesInference.html#bayesvalidrox.bayes_inference.bayes_inference.BayesInference" title="bayesvalidrox.bayes_inference.bayes_inference.BayesInference"><code class="xref any py py-class docutils literal notranslate"><span class="pre">bayesvalidrox.bayes_inference.bayes_inference.BayesInference</span></code></a>, we can also set the properties for this class as well. +These are collected in a dictionary and given to the function calls that perform the model comparison. +In this example we use the following settings.</p> +<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">opts_bootstrap</span> <span class="o">=</span> <span class="p">{</span> +<span class="gp">>>> </span> <span class="s2">"bootstrap"</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span> +<span class="gp">>>> </span> <span class="s2">"n_samples"</span><span class="p">:</span> <span class="mi">100</span><span class="p">,</span> +<span class="gp">>>> </span> <span class="s2">"Discrepancy"</span><span class="p">:</span> <span class="n">DiscrepancyOpts</span><span class="p">,</span> +<span class="gp">>>> </span> <span class="s2">"emulator"</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span> +<span class="gp">>>> </span> <span class="s2">"plot_post_pred"</span><span class="p">:</span> <span class="kc">False</span> +<span class="gp">>>> </span> <span class="p">}</span> +</pre></div> +</div> +<p>Now we can run the full model comparison.</p> +<div class="doctest highlight-default notranslate"><div class="highlight"><pre><span></span><span class="gp">>>> </span><span class="n">output_dict</span> <span class="o">=</span> <span class="n">BayesOpts</span><span class="o">.</span><span class="n">model_comparison_all</span><span class="p">(</span><span class="n">meta_models</span><span class="p">,</span> <span class="n">opts_bootstrap</span><span class="p">)</span> +</pre></div> +</div> +<p>The created plots are saved in the folder <cite>Outputs_Comparison</cite>.</p> +</section> </section> </article> @@ -384,9 +465,28 @@ </footer> </div> - <aside class="toc-drawer no-toc"> + <aside class="toc-drawer"> + <div class="toc-sticky toc-scroll"> + <div class="toc-title-container"> + <span class="toc-title"> + On this page + </span> + </div> + <div class="toc-tree-container"> + <div class="toc-tree"> + <ul> +<li><a class="reference internal" href="#">Bayesian multi-model comparison</a><ul> +<li><a class="reference internal" href="#example">Example</a></li> +</ul> +</li> +</ul> + + </div> + </div> + </div> + </aside> </div> diff --git a/public/borehole.html b/public/borehole.html index 683c27d0e04ec78a166d826a129aac151452cda5..014cf87ce0361c67738cab333bef733c074a6ec0 100644 --- a/public/borehole.html +++ b/public/borehole.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/examples.html b/public/examples.html index 4c621310a3263574de929c0bdd7f0468c73256fb..396ff2984d8c87b4def851642f1a92d2870613e2 100644 --- a/public/examples.html +++ b/public/examples.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/genindex.html b/public/genindex.html index 67a702598c7ef269e4c7bd789daf188a8d2611a0..efd05e85c6a4584e9962e9d1d0751ddeb168e983 100644 --- a/public/genindex.html +++ b/public/genindex.html @@ -237,9 +237,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -287,7 +284,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> @@ -378,6 +382,8 @@ <li><a href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_ard.RegressionFastARD.html#bayesvalidrox.surrogate_models.reg_fast_ard.RegressionFastARD.__init__">(bayesvalidrox.surrogate_models.reg_fast_ard.RegressionFastARD method)</a> </li> <li><a href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html#bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.__init__">(bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace method)</a> +</li> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.__init__">(bayesvalidrox.surrogate_models.sequential_design.SequentialDesign method)</a> </li> <li><a href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.MetaModel.html#bayesvalidrox.surrogate_models.surrogate_models.MetaModel.__init__">(bayesvalidrox.surrogate_models.surrogate_models.MetaModel method)</a> </li> @@ -586,6 +592,13 @@ <ul> <li><a href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.html#module-bayesvalidrox.surrogate_models.reg_fast_laplace">module</a> +</li> + </ul></li> + <li> + bayesvalidrox.surrogate_models.sequential_design + + <ul> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html#module-bayesvalidrox.surrogate_models.sequential_design">module</a> </li> </ul></li> <li> @@ -633,7 +646,7 @@ <li><a href="_autosummary/bayesvalidrox.surrogate_models.input_space.InputSpace.html#bayesvalidrox.surrogate_models.input_space.InputSpace.check_valid_inputs">(bayesvalidrox.surrogate_models.input_space.InputSpace method)</a> </li> </ul></li> - <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html#bayesvalidrox.surrogate_models.engine.Engine.choose_next_sample">choose_next_sample() (bayesvalidrox.surrogate_models.engine.Engine method)</a> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.choose_next_sample">choose_next_sample() (bayesvalidrox.surrogate_models.sequential_design.SequentialDesign method)</a> </li> </ul></td> <td style="width: 33%; vertical-align: top;"><ul> @@ -671,7 +684,7 @@ </li> </ul></td> <td style="width: 33%; vertical-align: top;"><ul> - <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html#bayesvalidrox.surrogate_models.engine.Engine.dual_annealing">dual_annealing() (bayesvalidrox.surrogate_models.engine.Engine method)</a> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.dual_annealing">dual_annealing() (bayesvalidrox.surrogate_models.sequential_design.SequentialDesign method)</a> </li> </ul></td> </tr></table> @@ -802,7 +815,11 @@ <table style="width: 100%" class="indextable genindextable"><tr> <td style="width: 33%; vertical-align: top;"><ul> <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html#bayesvalidrox.surrogate_models.engine.hellinger_distance">hellinger_distance() (in module bayesvalidrox.surrogate_models.engine)</a> + + <ul> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html#bayesvalidrox.surrogate_models.sequential_design.hellinger_distance">(in module bayesvalidrox.surrogate_models.sequential_design)</a> </li> + </ul></li> </ul></td> </tr></table> </section> @@ -854,7 +871,11 @@ <li><a href="_autosummary/bayesvalidrox.bayes_inference.mcmc.MCMC.html#bayesvalidrox.bayes_inference.mcmc.MCMC.log_prior">log_prior() (bayesvalidrox.bayes_inference.mcmc.MCMC method)</a> </li> <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html#bayesvalidrox.surrogate_models.engine.logpdf">logpdf() (in module bayesvalidrox.surrogate_models.engine)</a> + + <ul> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.html#bayesvalidrox.surrogate_models.sequential_design.logpdf">(in module bayesvalidrox.surrogate_models.sequential_design)</a> </li> + </ul></li> <li><a href="_autosummary/bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.OrthogonalMatchingPursuit.html#bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.OrthogonalMatchingPursuit.loo_error">loo_error() (bayesvalidrox.surrogate_models.orthogonal_matching_pursuit.OrthogonalMatchingPursuit method)</a> </li> </ul></td> @@ -926,6 +947,8 @@ <li><a href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_ard.html#module-bayesvalidrox.surrogate_models.reg_fast_ard">bayesvalidrox.surrogate_models.reg_fast_ard</a> </li> <li><a href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.html#module-bayesvalidrox.surrogate_models.reg_fast_laplace">bayesvalidrox.surrogate_models.reg_fast_laplace</a> +</li> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html#module-bayesvalidrox.surrogate_models.sequential_design">bayesvalidrox.surrogate_models.sequential_design</a> </li> <li><a href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html#module-bayesvalidrox.surrogate_models.surrogate_models">bayesvalidrox.surrogate_models.surrogate_models</a> </li> @@ -1052,7 +1075,7 @@ </li> <li><a href="_autosummary/bayesvalidrox.bayes_inference.mcmc.MCMC.html#bayesvalidrox.bayes_inference.mcmc.MCMC.run_sampler">run_sampler() (bayesvalidrox.bayes_inference.mcmc.MCMC method)</a> </li> - <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html#bayesvalidrox.surrogate_models.engine.Engine.run_util_func">run_util_func() (bayesvalidrox.surrogate_models.engine.Engine method)</a> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.run_util_func">run_util_func() (bayesvalidrox.surrogate_models.sequential_design.SequentialDesign method)</a> </li> </ul></td> </tr></table> @@ -1074,6 +1097,8 @@ <li><a href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_ard.RegressionFastARD.html#bayesvalidrox.surrogate_models.reg_fast_ard.RegressionFastARD.score">(bayesvalidrox.surrogate_models.reg_fast_ard.RegressionFastARD method)</a> </li> </ul></li> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign">SequentialDesign (class in bayesvalidrox.surrogate_models.sequential_design)</a> +</li> <li><a href="_autosummary/bayesvalidrox.surrogate_models.bayes_linear.BayesianLinearRegression.html#bayesvalidrox.surrogate_models.bayes_linear.BayesianLinearRegression.set_params">set_params() (bayesvalidrox.surrogate_models.bayes_linear.BayesianLinearRegression method)</a> <ul> @@ -1117,9 +1142,15 @@ <li><a href="_autosummary/bayesvalidrox.post_processing.post_processing.PostProcessing.html#bayesvalidrox.post_processing.post_processing.PostProcessing.sobol_indices">sobol_indices() (bayesvalidrox.post_processing.post_processing.PostProcessing method)</a> </li> <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html#bayesvalidrox.surrogate_models.engine.Engine.start_engine">start_engine() (bayesvalidrox.surrogate_models.engine.Engine method)</a> +</li> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.start_seqdesign">start_seqdesign() (bayesvalidrox.surrogate_models.sequential_design.SequentialDesign method)</a> </li> <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html#bayesvalidrox.surrogate_models.engine.subdomain">subdomain() (in module bayesvalidrox.surrogate_models.engine)</a> + + <ul> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.html#bayesvalidrox.surrogate_models.sequential_design.subdomain">(in module bayesvalidrox.surrogate_models.sequential_design)</a> </li> + </ul></li> </ul></td> </tr></table> </section> @@ -1128,7 +1159,7 @@ <h2>T</h2> <table style="width: 100%" class="indextable genindextable"><tr> <td style="width: 33%; vertical-align: top;"><ul> - <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html#bayesvalidrox.surrogate_models.engine.Engine.tradeoff_weights">tradeoff_weights() (bayesvalidrox.surrogate_models.engine.Engine method)</a> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.tradeoff_weights">tradeoff_weights() (bayesvalidrox.surrogate_models.sequential_design.SequentialDesign method)</a> </li> <li><a href="_autosummary/bayesvalidrox.bayes_inference.mcmc.MCMC.html#bayesvalidrox.bayes_inference.mcmc.MCMC.train_error_model">train_error_model() (bayesvalidrox.bayes_inference.mcmc.MCMC method)</a> </li> @@ -1168,13 +1199,13 @@ <td style="width: 33%; vertical-align: top;"><ul> <li><a href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_ard.update_precisions.html#bayesvalidrox.surrogate_models.reg_fast_ard.update_precisions">update_precisions() (in module bayesvalidrox.surrogate_models.reg_fast_ard)</a> </li> - <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html#bayesvalidrox.surrogate_models.engine.Engine.util_AlphOptDesign">util_AlphOptDesign() (bayesvalidrox.surrogate_models.engine.Engine method)</a> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_AlphOptDesign">util_AlphOptDesign() (bayesvalidrox.surrogate_models.sequential_design.SequentialDesign method)</a> </li> - <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html#bayesvalidrox.surrogate_models.engine.Engine.util_BayesianActiveDesign">util_BayesianActiveDesign() (bayesvalidrox.surrogate_models.engine.Engine method)</a> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianActiveDesign">util_BayesianActiveDesign() (bayesvalidrox.surrogate_models.sequential_design.SequentialDesign method)</a> </li> - <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html#bayesvalidrox.surrogate_models.engine.Engine.util_BayesianDesign">util_BayesianDesign() (bayesvalidrox.surrogate_models.engine.Engine method)</a> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_BayesianDesign">util_BayesianDesign() (bayesvalidrox.surrogate_models.sequential_design.SequentialDesign method)</a> </li> - <li><a href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html#bayesvalidrox.surrogate_models.engine.Engine.util_VarBasedDesign">util_VarBasedDesign() (bayesvalidrox.surrogate_models.engine.Engine method)</a> + <li><a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html#bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.util_VarBasedDesign">util_VarBasedDesign() (bayesvalidrox.surrogate_models.sequential_design.SequentialDesign method)</a> </li> </ul></td> </tr></table> diff --git a/public/index.html b/public/index.html index dcad29fd053e5f804ccff50405434996036a710f..ec005c25c4dabd5114c02937d0d645ccfbee8d74 100644 --- a/public/index.html +++ b/public/index.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/input_description.html b/public/input_description.html index 15276ff89db8a4735a131a0ee6fd8defc947bba0..bd280c02abe32071dcb98df357553afe58908086 100644 --- a/public/input_description.html +++ b/public/input_description.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/ishigami.html b/public/ishigami.html index dcf8bda0beb013af407cfc2bc09692aa9e5f66e9..84037dab5da9a575a46b80669a15c3b00537e112 100644 --- a/public/ishigami.html +++ b/public/ishigami.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/model_description.html b/public/model_description.html index da41e466709a96f632cca9cccb79f6e51e129f7f..cc6d6cce54a9d6a69d3d210c4ec9ded7ccceeb5f 100644 --- a/public/model_description.html +++ b/public/model_description.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.sequential_design</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.hellinger_distance.html">bayesvalidrox.surrogate_models.sequential_design.hellinger_distance</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.logpdf.html">bayesvalidrox.surrogate_models.sequential_design.logpdf</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.subdomain.html">bayesvalidrox.surrogate_models.sequential_design.subdomain</a></li> +<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/modelcomparison.html b/public/modelcomparison.html index 472be01bb69119cbebd70a3d8d3d1a7eee0e5028..8375810556027a7ca31f950e084177740a1cee7c 100644 --- a/public/modelcomparison.html +++ b/public/modelcomparison.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a 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href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/objects.inv b/public/objects.inv index 9269935a85e887aac2b1b3f13b91a4a9385002b6..8582dd8e85df9581e9955c6f5258c8a187283a96 100644 Binary files a/public/objects.inv and b/public/objects.inv differ diff --git a/public/ohaganfunction.html b/public/ohaganfunction.html index e7b7558755f9fd027a76475797e0e6836f331103..b9ef9f5893f6cd64172056ca94e1c2597c92d961 100644 --- a/public/ohaganfunction.html +++ b/public/ohaganfunction.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" 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href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.SequentialDesign.html">bayesvalidrox.surrogate_models.sequential_design.SequentialDesign</a></li> +</ul> +</li> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-29" name="toctree-checkbox-29" role="switch" type="checkbox"/><label for="toctree-checkbox-29"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error.html">bayesvalidrox.surrogate_models.surrogate_models.corr_loocv_error</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/packagedescription.html b/public/packagedescription.html index 875119c2724b77d8943b9bd3cb9f76be9c293d0e..7e93323897ae68898957f25143b24ae3316c96be 100644 --- a/public/packagedescription.html +++ b/public/packagedescription.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -289,7 +286,14 @@ <li class="toctree-l5"><a class="reference internal" 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href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/pollution.html b/public/pollution.html index e7ae39a11f7ac73ca57387256cb01bde1e73b773..f1bed24b70ed86aa00ec707935bcabeeab1064c4 100644 --- a/public/pollution.html +++ b/public/pollution.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of 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href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/post_description.html b/public/post_description.html index 33fa48a7a24fbaac8fc4bbd44531c37642a64171..ffe29253a3501612393b012e29cd938cc62ea21e 100644 --- a/public/post_description.html +++ b/public/post_description.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div 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href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> diff --git a/public/py-modindex.html b/public/py-modindex.html index 9246a7ee0e6c25f120eaa3824bf53a47106fd299..68779e1c21d3aa7c26c71f2eb637d75bae5b970c 100644 --- a/public/py-modindex.html +++ b/public/py-modindex.html @@ -237,9 +237,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.hellinger_distance.html">bayesvalidrox.surrogate_models.engine.hellinger_distance</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.logpdf.html">bayesvalidrox.surrogate_models.engine.logpdf</a></li> -<li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.subdomain.html">bayesvalidrox.surrogate_models.engine.subdomain</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.Engine.html">bayesvalidrox.surrogate_models.engine.Engine</a></li> </ul> </li> @@ -287,7 +284,14 @@ <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace.html">bayesvalidrox.surrogate_models.reg_fast_laplace.RegressionFastLaplace</a></li> </ul> </li> -<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.html">bayesvalidrox.surrogate_models.surrogate_models</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" type="checkbox"/><label for="toctree-checkbox-28"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.surrogate_models</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul> +<li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html">bayesvalidrox.surrogate_models.sequential_design</a><input class="toctree-checkbox" id="toctree-checkbox-28" name="toctree-checkbox-28" role="switch" 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href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.create_psi.html">bayesvalidrox.surrogate_models.surrogate_models.create_psi</a></li> <li class="toctree-l5"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator.html">bayesvalidrox.surrogate_models.surrogate_models.gaussian_process_emulator</a></li> @@ -490,6 +494,12 @@ <a href="_autosummary/bayesvalidrox.surrogate_models.reg_fast_laplace.html#module-bayesvalidrox.surrogate_models.reg_fast_laplace"><code class="xref">bayesvalidrox.surrogate_models.reg_fast_laplace</code></a></td><td> <em></em></td> </tr> + <tr class="cg-1"> + <td></td> + <td>    + <a href="_autosummary/bayesvalidrox.surrogate_models.sequential_design.html#module-bayesvalidrox.surrogate_models.sequential_design"><code class="xref">bayesvalidrox.surrogate_models.sequential_design</code></a></td><td> + <em></em></td> + </tr> <tr class="cg-1"> <td></td> <td>    diff --git 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"theori": [], "tradeoff": 69, "train": [69, 70, 73, 75, 79, 81, 82, 84, 86, 87], "tutori": 87, "uncertainti": 87, "update_precis": 56, "user": 83, "valid": 77, "vblinearregress": 26, "within_rang": 17}}) \ No newline at end of file diff --git a/public/surrogate_description.html b/public/surrogate_description.html index db4708ce672e7ec6bdb91614f5e36b2b7aabec9a..ddf24bbc7c9879049baf77a0bd8a1076185ddb05 100644 --- a/public/surrogate_description.html +++ b/public/surrogate_description.html @@ -239,9 +239,6 @@ </ul> </li> <li class="toctree-l4 has-children"><a class="reference internal" href="_autosummary/bayesvalidrox.surrogate_models.engine.html">bayesvalidrox.surrogate_models.engine</a><input class="toctree-checkbox" id="toctree-checkbox-18" name="toctree-checkbox-18" role="switch" type="checkbox"/><label for="toctree-checkbox-18"><div class="visually-hidden">Toggle navigation of bayesvalidrox.surrogate_models.engine</div><i class="icon"><svg><use 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