From ca6248785c16a6854133111891e3f600987c3767 Mon Sep 17 00:00:00 2001
From: kohlhaasrebecca <rebecca.kohlhaas@outlook.com>
Date: Wed, 24 Jul 2024 14:24:46 +0200
Subject: [PATCH] [docs] Shorten BMC in user_guide
Reduced the number of samples, walkers, etc for BMC for this example, so that the pipeline can run without exceeding the time limit
---
examples/user_guide/example_user_guide.py | 13 ++++++++++---
1 file changed, 10 insertions(+), 3 deletions(-)
diff --git a/examples/user_guide/example_user_guide.py b/examples/user_guide/example_user_guide.py
index ae1371371..20e2bdb27 100644
--- a/examples/user_guide/example_user_guide.py
+++ b/examples/user_guide/example_user_guide.py
@@ -131,7 +131,7 @@ if __name__ == '__main__':
BayesObj.inference_method = 'MCMC'
import emcee
BayesObj.mcmc_params = {
- 'n_steps': 1e4,
+ 'n_steps': 100, #e4,
'n_walkers': 30,
'moves': emcee.moves.KDEMove(),
'multiprocessing': False,
@@ -194,10 +194,17 @@ if __name__ == '__main__':
opts_bootstrap = {
"bootstrap": True,
- "n_samples": 100,
+ "n_samples": 10, #0,
"Discrepancy": DiscrepancyOpts,
"emulator": True,
- "plot_post_pred": False
+ "plot_post_pred": False,
+ "mcmc_params": {
+ 'n_steps': 100, #e4,
+ 'n_walkers': 10,
+ 'moves': emcee.moves.KDEMove(),
+ 'multiprocessing': False,
+ 'verbose': False
+ }
}
output_dict = BayesOpts.model_comparison_all(
--
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