diff --git a/docs/source/al_description.rst b/docs/source/al_description.rst index 4b3ce9859bfe69203c1c5cc42020faf83244c952..37eed69fae446ece4c6494616fcbc362149fb9c0 100644 --- a/docs/source/al_description.rst +++ b/docs/source/al_description.rst @@ -7,7 +7,7 @@ The relevant functions are contained in the class :any:`bayesvalidrox.surrogate_ .. warning:: Exploration with 'voronoi' is disabled for release v1.1.0! -.. image:: ../diagrams/active_learning_reduced.png +.. image:: ./docs/diagrams/active_learning_reduced.png :width: 550 :alt: UML diagram for the classes and functions used in active learning in BayesValidRox. diff --git a/docs/source/bayes_description.rst b/docs/source/bayes_description.rst index 5017bceeaa28c0b2d4150bebb91437a959c9edd4..2c49ab2c653368fd215ae1c97c4b8b28cd30df89 100644 --- a/docs/source/bayes_description.rst +++ b/docs/source/bayes_description.rst @@ -19,7 +19,7 @@ Bayesian inference .. container:: rightside - .. image:: ../diagrams/bayesian_validation.png + .. image:: ./docs/diagrams/bayesian_validation.png :width: 300 :alt: UML diagram for classes related to Bayesian inference. @@ -115,11 +115,11 @@ For inference with MCMC, chain diagnostics are also written out in the console. .. container:: rightside - .. image:: ../../examples/user_guide/Outputs_Bayes_model_Calib/Posterior_Dist_model_emulator.pdf + .. image:: ./examples/user_guide/Outputs_Bayes_model_Calib/Posterior_Dist_model_emulator.pdf :width: 400 :alt: Posterior distribution of the input parameter - .. image:: ../../examples/user_guide/Outputs_Bayes_model_Calib/Post_Prior_Perd_model_emulator_A.pdf + .. image:: ./examples/user_guide/Outputs_Bayes_model_Calib/Post_Prior_Perd_model_emulator_A.pdf :width: 400 :alt: Comparison of posterior prediction to the observation \ No newline at end of file diff --git a/docs/source/bmc_description.rst b/docs/source/bmc_description.rst index 3ebd9d5250e3aee50bd1dd9fe9c9fb6845be6d15..78cc03d035d572dd81e914d806b77962e94a1810 100644 --- a/docs/source/bmc_description.rst +++ b/docs/source/bmc_description.rst @@ -10,7 +10,7 @@ Bayesian multi-model comparison .. container:: rightside - .. image:: ../diagrams/bayesian_model_comparison.png + .. image:: ./docs/diagrams/bayesian_model_comparison.png :width: 400 :alt: UML diagram for classes related to Bayesian multi-model comparison. diff --git a/docs/source/index.rst b/docs/source/index.rst index 8671dc83e43f77a6f5501c7f61e6a040eb5aa12a..bcf65d14c8c372a12d5838501a75bedc97552a1c 100644 --- a/docs/source/index.rst +++ b/docs/source/index.rst @@ -5,7 +5,7 @@ Surrogate-assisted Bayesian validation of computational models ============================================================== **BayesValidRox** is an open-source python package that provides methods for surrogate modeling, Bayesian inference and model comparison. -.. image:: ../diagrams/balance.png +.. image:: ./docs/diagrams/balance.png :width: 600 :alt: Weighting model results against data with associated uncertainty, costs and sparsity diff --git a/docs/source/input_description.rst b/docs/source/input_description.rst index ee506fc23487557fe054015d11cc5e09c0ab0bf2..04d4beedea4bdcc59fa04033a3f3b7de56ec8de1 100644 --- a/docs/source/input_description.rst +++ b/docs/source/input_description.rst @@ -18,7 +18,7 @@ This uncertainty can be described as probability distributions over possible val .. container:: rightside - .. image:: ../diagrams/input_classes.png + .. image:: ./docs/diagrams/input_classes.png :width: 300 :alt: UML diagram for input-related classes in bayesvalidrox @@ -76,6 +76,6 @@ The generated samples can be visualized against their marginal distributions. The results will be saved in the folder ``Outputs_Priors``. -.. image:: ../../examples/user_guide/Outputs_Priors/prior_$X$.png +.. image:: ./examples/user_guide/Outputs_Priors/prior_$X$.png :width: 400 :alt: Generated samples against their marginal distribution diff --git a/docs/source/model_description.rst b/docs/source/model_description.rst index 42103caa6f68cf7a71791f0317519f20c563aba0..a275d21f8d6ad0bd408166e2727ea593304b4557 100644 --- a/docs/source/model_description.rst +++ b/docs/source/model_description.rst @@ -13,7 +13,7 @@ Models .. container:: rightside - .. image:: ../diagrams/model.png + .. image:: ./docs/diagrams/model.png :width: 150 :alt: UML diagram for the bayesvalidrox class :any:`bayesvalidrox.pylink.pylink.PyLinkForwardModel`. diff --git a/docs/source/packagedescription.rst b/docs/source/packagedescription.rst index 1d1fd65173851b1c5942f7da35568c2fd3e4c696..532c1e4cfc5db48bee0c31888e42ed2335a55387 100644 --- a/docs/source/packagedescription.rst +++ b/docs/source/packagedescription.rst @@ -34,7 +34,7 @@ Overview This package is split into multiple aspects corresponding to its folder structure. -.. image:: ../diagrams/folder_structure.png +.. image:: ./docs/diagrams/folder_structure.png :width: 600 :alt: Folder structure of **bayesvalidrox** diff --git a/docs/source/post_description.rst b/docs/source/post_description.rst index 987f18e7dbf8ea21cc987265bbbac7ac7a8d2ee1..1a636d681f34259d56da934b8296756aba50c653 100644 --- a/docs/source/post_description.rst +++ b/docs/source/post_description.rst @@ -12,7 +12,7 @@ Postprocessing .. container:: rightside - .. image:: ../diagrams/postprocessing.png + .. image:: ./docs/diagrams/postprocessing.png :width: 300 :alt: UML diagram for the classes and functions used in active learning in BayesValidRox. @@ -60,7 +60,7 @@ The visual comparison of model and metamodel results is saved in the folder ``Ou .. container:: rightside - .. image:: ../../examples/user_guide/Outputs_PostProcessing_calib/Model_vs_PCEModel_y_1.pdf + .. image:: ./examples/user_guide/Outputs_PostProcessing_calib/Model_vs_PCEModel_y_1.pdf :width: 400 :alt: Visual comparison of model and metamodel outputs \ No newline at end of file diff --git a/docs/source/surrogate_description.rst b/docs/source/surrogate_description.rst index 2a1da4b3fc230aa0fbb98369a5b00edb676a8088..cbf2d9dd76216a5a96d473d2829c30f3069fd521 100644 --- a/docs/source/surrogate_description.rst +++ b/docs/source/surrogate_description.rst @@ -8,7 +8,7 @@ We call this dataset the training data, with training samples :math:`(x_i)_{i=1, BayesValidRox creates surrogate models as objects of the class :any:`bayesvalidrox.surrogate_models.surrogate_models.MetaModel`. Training is performed by the class :any:`bayesvalidrox.surrogate_models.engine.Engine`. -.. image:: ../diagrams/metamod_training_reduced.png +.. image:: ./docs/diagrams/metamod_training_reduced.png :width: 800 :alt: UML diagram for metamodel-related classes in bayesvalidrox