[viplab] Sample container for app

viplab/Dockerfile

+# An example runner for ViPLab
+FROM ubuntu:bionic
+MAINTAINER timokoch <timo.koch@iws.uni-stuttgart.de>
+
+# cleanup
+RUN rm -f /etc/apt/apt.conf.d/docker-gzip-indexes && \
+    rm -rf /var/lib/apt/lists/*
+
+# get the package list
+RUN apt-get update && apt-get dist-upgrade --no-install-recommends --yes && \
+    apt-get install --no-install-recommends --yes \
+    ca-certificates \
+    ssh \
+    vim \
+    python-dev \
+    python-pip \
+    libffi-dev \
+    git \
+    pkg-config \
+    build-essential \
+    gfortran \
+    cmake \
+    mpi-default-dev \
+    mpi-default-bin \
+    libsuitesparse-dev \
+    zlib1g-dev \
+    ninja-build \
+    wget \
+    && apt-get clean && rm -rf /var/lib/apt/lists/*
+
+# create a data folder
+RUN mkdir -p /data
+
+# create source directory
+RUN mkdir -p /data/src
+WORKDIR /data/src/
+RUN git clone -b releases/2.6 https://gitlab.dune-project.org/core/dune-common.git && \
+    git clone -b releases/2.6 https://gitlab.dune-project.org/core/dune-geometry.git && \
+    git clone -b releases/2.6 https://gitlab.dune-project.org/core/dune-grid.git && \
+    git clone -b releases/2.6 https://gitlab.dune-project.org/core/dune-istl.git && \
+    git clone -b releases/2.6 https://gitlab.dune-project.org/core/dune-localfunctions.git && \
+    git clone -b master https://git.iws.uni-stuttgart.de/dumux-repositories/dumux.git
+
+# create system-wide symlink to dunecontrol for convenience
+RUN ln -s /data/src/dune-common/bin/dunecontrol /usr/bin/dunecontrol
+
+# The opts file to run dune control
+ADD gcc.opts /data/opts/cmake.opts
+
+# The runner script
+ADD run.sh /data/bin/run.sh
+RUN chmod +x /data/bin/run.sh
+
+# run dunecontrol
+RUN mkdir -p /data/build
+RUN dunecontrol --opts=/data/opts/cmake.opts --builddir=/data/build --module=dumux all
+
+# compile the test executable
+RUN ninja -C /data/build/dumux/ test_1p_box
+
+# create the shared volume
+VOLUME /data/shared
+
+# run simulation wrapper entry point
+WORKDIR /data/shared
+ENTRYPOINT ["/data/bin/run.sh"]

viplab/build-image.sh

+# run systemd-resolve --status to get the dns server and put in /etc/docker/daemon.json
+docker build -t git.iws.uni-stuttgart.de:4567/dumux-repositories/dumux-docker/viplab/test .

viplab/docker-run.sh

+#!/bin/bash
+docker run --user $(id -u):$(id -g) -v $(pwd):/data/shared dumux/viplab/test params.input

viplab/gcc.opts

+GXX_RELEASE_WARNING_OPTS=" \
+    -Wall \
+    -Wunused \
+    -Wmissing-include-dirs \
+    -Wcast-align \
+    -Wno-missing-braces \
+    -Wmissing-field-initializers \
+    -Wno-sign-compare"
+
+GXX_RELEASE_OPTS=" \
+    -fdiagnostics-color=always \
+    -fno-strict-aliasing \
+    -fstrict-overflow \
+    -fno-finite-math-only \
+    -O3 \
+    -funroll-loops \
+    -g0"
+
+CMAKE_FLAGS="
+-DCMAKE_GENERATOR='Ninja'
+-DCMAKE_MAKE_PROGRAM='/usr/bin/ninja'
+-DCMAKE_C_COMPILER=/usr/bin/gcc
+-DCMAKE_CXX_COMPILER=/usr/bin/g++
+-DCMAKE_CXX_FLAGS_RELEASE='$GXX_RELEASE_OPTS $GXX_RELEASE_WARNING_OPTS'
+-DCMAKE_CXX_FLAGS_DEBUG='-O0 -g -ggdb -Wall -Wextra -Wno-unused-parameter -Wno-sign-compare'
+-DCMAKE_CXX_FLAGS_RELWITHDEBINFO='$GXX_RELEASE_OPTS $GXX_RELEASE_WARNING_OPTS -g -ggdb -Wall'
+-DCMAKE_BUILD_TYPE=Release
+-DUSE_MPI=ON
+"

viplab/params.input

+[TimeLoop]
+DtInitial = 1 # [s]
+TEnd = 1 # [s]
+
+[Grid]
+LowerLeft = 0 0
+UpperRight = 1 1
+Cells = 10 10
+
+[Problem]
+Name = 1ptestfv # name passed to the output routines
+
+[SpatialParams]
+LensLowerLeft = 0.2 0.2
+LensUpperRight = 0.8 0.8
+
+Permeability = 1e-10 # [m^2]
+PermeabilityLens = 1e-12 # [m^2]

viplab/run.sh

+#!/bin/bash
+/data/build/dumux/test/porousmediumflow/1p/implicit/isothermal/test_1p_box "$@"