[cleanup] Remove unnecessary includes

dumux/freeflow/navierstokes/staggered/fluxoversurface.hh

.../2p/sequential/diffusion/cellcentered/velocityadaptive.hh

dumux/porousmediumflow/velocityoutput.hh

test/io/gridmanager/gmshboundaryflagtest.hh

...multidomain/embedded/1d3d/1p2c_richards2c/problem_soil.hh

test/multidomain/embedded/1d3d/1p_1p/problem_tissue.hh

test/multidomain/embedded/1d3d/1p_richards/problem_soil.hh

test/multidomain/embedded/2d3d/1p_1p/problem_matrix.hh

test/multidomain/facet/test_gridmanager.cc