[test][geometry] remove deprecation warnings from moved geometry headers

dumux/common/pointsource.hh

dumux/discretization/basegridgeometry.hh

dumux/freeflow/navierstokes/staggered/fluxoversurface.hh

dumux/multidomain/boundary/darcydarcy/couplingmapper.hh

dumux/multidomain/embedded/circlepoints.hh

dumux/multidomain/embedded/couplingmanager1d3d.hh

dumux/multidomain/embedded/couplingmanagerbase.hh

dumux/multidomain/glue.hh

test/geometry/boundingboxtree/test_bboxtree.cc

test/geometry/boundingboxtree/test_geometry_fracture.cc

test/geometry/test_0d1d_intersection.cc

test/geometry/test_1d1d_intersection.cc

test/geometry/test_1d2d_intersection.cc

test/geometry/test_1d3d_intersection.cc

test/geometry/test_2d2d_intersection.cc

test/geometry/test_2d3d_intersection.cc

test/geometry/test_distance.cc

test/geometry/test_graham_convex_hull.cc

test/geometry/test_intersectingentity_cartesiangrid.cc

test/geometry/test_intersection.hh