git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15445 2fb0f335-1f38-0410-981e-8018bf24f1b0

Fix CMakeLists.txt that caused on some systems to broken
make doc.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15444 2fb0f335-1f38-0410-981e-8018bf24f1b0

Remove breakurl which does not work together with pdfLaTeX.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15438 2fb0f335-1f38-0410-981e-8018bf24f1b0

added timeStepIndex to output in zeroeqmodels
updated documentation of boundarylayer model

reviewed by natalies



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15437 2fb0f335-1f38-0410-981e-8018bf24f1b0

- changed naming of mole fractions x^alpha_kappa to x^kappa_alpha
- added zeroThreshold for the kuevette problem, because the non-wetting
  phase already disappaered at the end of the simulation

reviewed by timok



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15436 2fb0f335-1f38-0410-981e-8018bf24f1b0

introduced setMassFraction() in the compositionalfluidstate.hh so that
in case of mass fraction formulation, they can be set directly, the
converting to mole fractions is now handled by the
compositionalfluidstate class

some test failed (kuevette with 5% difference), new references are
committed, however maybe some thresholds have to be adapted

reviewed by kissinger


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15433 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added FluidState group, which appears now on the module page
- fixed ingroups


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15432 2fb0f335-1f38-0410-981e-8018bf24f1b0

- outsourced furtherpractice subchapter
- updated steps of a dumux simulation
- removed todos



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15431 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added doxygen comments and cleanup of defaultcomponents.hh
- improved documentation of constant.hh

[test]
- added units in test_navierstokes.input

reviewed by natalies



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15420 2fb0f335-1f38-0410-981e-8018bf24f1b0

list



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15409 2fb0f335-1f38-0410-981e-8018bf24f1b0

should pass now.

Reviewed by Timo.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15405 2fb0f335-1f38-0410-981e-8018bf24f1b0

Add required properties and their defaults.
[fix] Parameter in the ni electrochemistry
[cleanup] Adjust class names to naming conventions

Reviewed by bernd



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15403 2fb0f335-1f38-0410-981e-8018bf24f1b0

added the kinematicEddyViscosity to the vtu output, for using it in the
transport models

reviewed by kilian


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15401 2fb0f335-1f38-0410-981e-8018bf24f1b0

do not mark reference vtu files as binary

reviewed by timok


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15400 2fb0f335-1f38-0410-981e-8018bf24f1b0

Updated featurelist for all freeflow and multidomain tests and partially
for io and material.
As the parameterlist.txt, now also the featurelist.txt uses the doxygen
markdown for the tables.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15397 2fb0f335-1f38-0410-981e-8018bf24f1b0

Instead of an Excel sheet, a text document holds the parameter list now.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15396 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added "constant" component which reads its properties from the input file
- updated documention for the "unit" component
- updated test_navierstokes which now uses the "constant" component

reviewed by bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15395 2fb0f335-1f38-0410-981e-8018bf24f1b0

The parameters are now listed using the mark down support of doxygen for
creating tables. The parameter spreadsheet and html are now superfluous.
The script for checking new/old parameters has been updated.

reviewed by bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15394 2fb0f335-1f38-0410-981e-8018bf24f1b0

[test] Make restart test dependent on the original test so that restart files are available even in parallel testing. Reviewed by bernd

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15390 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added DUNE_THROW in case some wants to use stokes in 3D
- removed unnecessary and unused code accidentily committed in r12468

reviewed by timok


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15389 2fb0f335-1f38-0410-981e-8018bf24f1b0

and velocity in order to make the test pass when using UG.

[evaporationatmosphereproblem.hh] Removed yasp grid as option since it
does not work with the interfacegridcreator. The .cc file already
contains a guardian macro for this.

Reviewed by Thomas



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15387 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Thomas


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15384 2fb0f335-1f38-0410-981e-8018bf24f1b0

[bugfix,2pnc] Fix the 2pnc model/test. A volVars update got deleted by accident causing wrong vtu output.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15382 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15381 2fb0f335-1f38-0410-981e-8018bf24f1b0

The added patch multidomaingrid-2.3.patch adapts the
releases/2.3-branch of dune-multidomaingrid such that the 2.4 versions
of the Dune core modules can be used. See patches/README and
test/multidomain/README for details.

Reviewed by fetzer.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15379 2fb0f335-1f38-0410-981e-8018bf24f1b0

[adapt] Implement a boundaryFaceIndex method for cellcentered fv geometry for compatibility with the box fvgeometry.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15378 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15377 2fb0f335-1f38-0410-981e-8018bf24f1b0

boundary/source function available for implicit problems.

The init indicator used to assume to have an *AtPos method available.
However, these methods are not always available. The new inidicator uses
the respective highest method in hierarchy.

Reviewed by martins 


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15375 2fb0f335-1f38-0410-981e-8018bf24f1b0

improved readability of testing output

reviewed by timok


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15372 2fb0f335-1f38-0410-981e-8018bf24f1b0

GridManager.
- Removed UG as grid manager for dissolutionproblem.hh, it uses YaspGrid
  instead now.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15359 2fb0f335-1f38-0410-981e-8018bf24f1b0

preprocessor directives

Reviewed by kilian


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15358 2fb0f335-1f38-0410-981e-8018bf24f1b0

The method to be called is subIndex now instead of index. The difference
in the output filenames is not due to parallel/sequential but due to a
different behavior of the VtkSequenceWriter in Dune 2.3 and 2.4.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15356 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15352 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed zeroThresholds

reviewed by nicolas



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15351 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15350 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15349 2fb0f335-1f38-0410-981e-8018bf24f1b0

functionality.

Add a test for the gmsh interface of the gridcreator. The example uses
parametrized boundary segments read from the gmsh file and
boundaryMarkers defined in the gmsh file. The output files are fuzzy
comopared.

Reviewed by bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15348 2fb0f335-1f38-0410-981e-8018bf24f1b0

- All headers and source files are moved to the specfied include directory during installation.

- Existing CMakeLists.txt files were appended.
- CMakeLists.txt were added in folders that did not contain any CMakeLists.txt files but contain headers
- The installed version of dumux has been tested by Bernd with the dumux-lecture module

Reviewed, modified and tested by Bernd.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15347 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15346 2fb0f335-1f38-0410-981e-8018bf24f1b0

  - added functionality and properties to refine grid in all directions
  - naming (comp -> dimIdx)

[multidomain]
  - adapted to changes in the interfacegridcreator
  - removed unused properties from input file
  - in coupled zeroeq problem added output at beginning of simulations

[freeflow]
  - removed one unused property from test_zeroeq2c.input

reviewed by timok



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15341 2fb0f335-1f38-0410-981e-8018bf24f1b0