update containing: multidomain restart, gnuplot and fuzzycompare


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14459 2fb0f335-1f38-0410-981e-8018bf24f1b0

Added files for plotting the material laws. Added functionality to plot
files and functions in gnuplot, too. Two different examples how to use
the interface are added.
1) plot material laws like, pc-Sw, kr-Sw, D_eff-Sw, \lambda-Sw, etc:
   see test/implicit/2p2c/test/implicit/2p2c/waterairspatialparams.hh
2) live output of results:
   see test/multidomain/2cnistokes2p2cni/2p2cnisubproblem.hh

Test for the material plot functions will be introduced after the
release.

reviewed by gruenich




git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14458 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14457 2fb0f335-1f38-0410-981e-8018bf24f1b0

Fixes a copy mistake from the 2d to the 3d test.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14456 2fb0f335-1f38-0410-981e-8018bf24f1b0

The changes result from commit r14158, where the restart functionality
was introduced for the multidomain models. The differences are minor.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14455 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated svn ignore properties, added test executables



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14449 2fb0f335-1f38-0410-981e-8018bf24f1b0

the problem file due to FS#253.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14448 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14446 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14443 2fb0f335-1f38-0410-981e-8018bf24f1b0

The function is unique to the 1p2c model is not actively in use (functions in the spatial params always return false).
It is still possible to globally use two point gradients with the box method by setting the property ImplicitUseTwoPointFluxes.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14442 2fb0f335-1f38-0410-981e-8018bf24f1b0

The local jocabian is sized 1*2^dim x 1*2^dim for the box scheme and 1 x 2*dim for the cc scheme as default. 
Some advances approximation schemes, grids with hanging nodes, mixed dimensional grids require different sizes. 
The actual size was already calculated in implicitlocaljacobian. 
If the actual size is bigger than the default size the matrix is resized accordingly now.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14441 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed autotools errors

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14432 2fb0f335-1f38-0410-981e-8018bf24f1b0

The error occurs in the compositional multi-phase models 2p2c, 3p3c and co2 during the update of the static data
- The problem has been fixed for the three models
- Additionally another check in the implicitmodel.hh update() function was added to make sure that no process converges if all the other processes have not converged as well.
Reviewed by Bernd.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14431 2fb0f335-1f38-0410-981e-8018bf24f1b0

adapted templates in diffusivityconstanttau.hh, which wasn't used
anyway.
added rhoSolid to the thermalconductivitylaws.
updated some comments and GNU licence.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14430 2fb0f335-1f38-0410-981e-8018bf24f1b0

add a generic gnuplotinterface with a simple
the gnuplot interface currently only works with CMake

reviewed by Beatrix



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14428 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed error occuring with last commit, that "test passed" was printed
even though the test failed and output of the corresponding vtu file
paths was suppressed

reviewed by Beatrix



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14421 2fb0f335-1f38-0410-981e-8018bf24f1b0

changed fuzzycompare script, so that now that _maximum_ difference in 
_every_ field is printed

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14415 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14382 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by nicolas)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14373 2fb0f335-1f38-0410-981e-8018bf24f1b0

by doxygen.
- One more small change in a unit in co2.hh.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14370 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Alex

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14369 2fb0f335-1f38-0410-981e-8018bf24f1b0

Opts files for autotools are renamed to autotools-*.opts,
outdated flags were removed.
(reviewed by martinb)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14364 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14329 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Gabriele and Johannes


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14325 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Gabriele and Johannes



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14324 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Gabriele and Johannes


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14323 2fb0f335-1f38-0410-981e-8018bf24f1b0

possible, removed try and catch for reading runtime parameters 


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14322 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14321 2fb0f335-1f38-0410-981e-8018bf24f1b0

specified in inputfiles instead of the problem files whenever possible.
Reviewed by Johannes


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14320 2fb0f335-1f38-0410-981e-8018bf24f1b0

is updated (Reviewed by Bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14318 2fb0f335-1f38-0410-981e-8018bf24f1b0

Added comment # Disable gravity behind:
EnableGravity = 0 in the decoupled test input files

Reviewed by Beatrix


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14317 2fb0f335-1f38-0410-981e-8018bf24f1b0

reviewed by Johannes


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14316 2fb0f335-1f38-0410-981e-8018bf24f1b0

the input files whenever possible.
Reviewed by Beatrix


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14315 2fb0f335-1f38-0410-981e-8018bf24f1b0

Since grid implementations like Yasp calculate the Geometries on the
fly, every call to entity.geometry() may involve computation. This patch
stores a Geometry when it can be used later on in the same block. Only
for the implicit models, decoupled contains a lot more.

For simple models this actually pays off: for 1p in 3d on a larger grid,
the running time could be reduced from 15.5 to 14 s.

Reviewed by Timo.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14284 2fb0f335-1f38-0410-981e-8018bf24f1b0

Use the layouts that are pre-defined by Dune.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14241 2fb0f335-1f38-0410-981e-8018bf24f1b0

In some places, property retrievals of the form
GET_PROP...(TypeTag, PTAG(...))
can still be found. The use of PTAG is not required for a very long time
already. This patch replaces such calls by
GET_PROP...(TypeTag, ...)

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14240 2fb0f335-1f38-0410-981e-8018bf24f1b0

PDElab is a requirement for el2p for a very long time now. Some switches
remained. This patch deletes them for consistency.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14238 2fb0f335-1f38-0410-981e-8018bf24f1b0

So far, the el2p model did not run in parallel, since our parallel
solvers assume a certain ordering of the degrees of freedom. This patch
mainly introduces an AMG backend that is tailored to the el2p model. It
simply reorders the linear system by copying from the original system,
passes the reordered system to the original AMG backend, and
reorders/copies the result back. This could be achieved more
efficiently and with less memory usage by already reordering the dofs
inside the el2p model or by adapting the AMG backend. Since the
performance impact appears to be minimal, we decided to keep the current
simple solution and try a better one once we need it.

Reviewed by Martin B.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14235 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14234 2fb0f335-1f38-0410-981e-8018bf24f1b0

Remove unused include and enums. Corrected enums to match cellcentered geometry.
The enums were still matched to the box method causing a memory overhead for the cellcentered.
Cellcentered methods should now need less allocated memory. Question remains if vector sizes 
in element geometry have to be variable (hanging nodes and low dimensional grids)

Reviewed by bernd
  


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14233 2fb0f335-1f38-0410-981e-8018bf24f1b0