Fixed serializing and use of restart for the multidomain problems.
Restart of the problem can now be achieved by setting
TimeManager.Restart TIME.
However these changes also changed the reference solutions.

reviewed by Bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14158 2fb0f335-1f38-0410-981e-8018bf24f1b0

All implicit porous-media models except 2pdfm are now able to run on
grids with dim < dimWorld. This still required some replacements of dim
by dimWorld, for example, in the velocity output of all models. In
implicit/1p, four new tests are added that run the 1p test problem on
1d-2d and 1d-3d Alberta grids with box and cell-centered, respectively.
Compilation has been tested also for all other models, but no runtime
testing has been performed.

This completes FS#183. Based upon preliminary work and a patch by
Natalie, thank you.

Reviewed by Natalie.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14110 2fb0f335-1f38-0410-981e-8018bf24f1b0

and the forgotten update of the reference solutions



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14104 2fb0f335-1f38-0410-981e-8018bf24f1b0

cleaned up the stokes-darcy models:
  - SET_TYPE_PROP task from Dumux Day
  - cleaned up input
  - removed commented lines of code
  - removed try/catch blocks

updated the coupled-freeflow reference results which was broken in one
of the previous commits

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14094 2fb0f335-1f38-0410-981e-8018bf24f1b0

Before, velocity output only worked for cubes. This generalizes it to
simplices (box and cc) and prisms/pyramids (box only). Implements
FS#248.

Some reference solutions are adpated due to an improved boundary
condition handling for cell centered.

Reviewed by Alex.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14085 2fb0f335-1f38-0410-981e-8018bf24f1b0

- Included tests richardsniconduction and convection test for box and cc
- Fixed unit of thermalconductivitySolid() in all spatial parameters in the test folder from W/m^2 to W/(m K)

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14054 2fb0f335-1f38-0410-981e-8018bf24f1b0

update to the generic non-isothermal model

adjusted:
 - 1p model
 - 3p model
 - 1p test (including 1pni tests)
 - 1p2c test (including 1p2cni tests)
 - 2p2c test (including 2p2cni tests)
 - 3p test (including 3pni tests)
 - 3p3c test (including 3p3cpni tests)
 - new ctest for kuevette problem

updated:
 - SET_TYPE_PROP instead of SET_PROP
 - documentation of non-isothermal problems
 - solution for 2pinjectionproblem (now with simplex grid)
 - version number in one start message

deleted:
 - old non-isothermal test folders
 - whitespace at end of configure.ac lines

created and reviewed by kissinger and fetzer




git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13825 2fb0f335-1f38-0410-981e-8018bf24f1b0

changed position of the permeability values



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13582 2fb0f335-1f38-0410-981e-8018bf24f1b0

[3p3c] Removed permeability function in volumevariables and moved perm-output to problem file - so that the model gives no error when choosing anisotropic/tensor-valued permeabilities.

This changed order of output fields, so reference vtus where adjusted too

(Reviewed by bernd)



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13572 2fb0f335-1f38-0410-981e-8018bf24f1b0

reviewed and discussed with Alex

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13507 2fb0f335-1f38-0410-981e-8018bf24f1b0

- Deprecated the 3p3cni model
- Added effective thermal conductivity calculation in fluidmatrixinteractions for 3p
- Added thermal conductivity functions to the 3p fluidsystem h2oairmesitylen.hh and h2oairxylene.hh
- Upddated the 3p3cni test for the generic non-isothermal model
- Changed the reference vtus for the two tests, since results are slightly different due to different thermal conductivities


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13427 2fb0f335-1f38-0410-981e-8018bf24f1b0

added cmake and ctest compatibility for multidomain problems

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13371 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13355 2fb0f335-1f38-0410-981e-8018bf24f1b0

correct use of wildcards, add ALUGrid flags to tests with AMG.

Merge revisions 12949, 13246 and 13248 from the strip-pdelab branch.
They all improve the buildsystem behavior.

Thanks to Markus Blatt for the work.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13282 2fb0f335-1f38-0410-981e-8018bf24f1b0

The change to conservation of moles in the continuity balance brought
some non-fuzzy, but tolerable changes, to the Stokes2c(ni) tests.
Moreover, the stabilization parameter for the Stokes2c test has been
increased to dampen further the unphysical pressure oscillations.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13263 2fb0f335-1f38-0410-981e-8018bf24f1b0

The correct usage of wildcards is "$(wildcard *.hh)".
With this patch we use these instead of "*.hh".

Quoting from https://www.gnu.org/software/make/manual/html_node/Wildcard-Examples.html#Wildcard-Examples

Wildcard expansion does not happen when you define a variable. Thus, if you write this:

     objects = *.o

then the value of the variable objects is the actual string ‘*.o’. However, if you use the value of objects in a target or prerequisite, wildcard expansion will take place there. If you use the value of objects in a recipe, the shell may perform wildcard expansion when the recipe runs. To set objects to the expansion, instead use:

     objects := $(wildcard *.o)



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13248 2fb0f335-1f38-0410-981e-8018bf24f1b0

writer: call that function in order to write it to result file
reference: identical except one additional variable present


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13234 2fb0f335-1f38-0410-981e-8018bf24f1b0

in output


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13223 2fb0f335-1f38-0410-981e-8018bf24f1b0

included the energy fluxes transported by the diffusive component fluxes
times the enthalpy of the components
applies only for the free flow region

reviewed by Bernd and Vishal


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13165 2fb0f335-1f38-0410-981e-8018bf24f1b0

Local chemical equilibrium and local thermal non-equilibrium with two energy equations. 

A new fluidsystem with constant properties is implemented. 

The fluid temperature on the right boundary is verified by an analytical approximation for the stationary configuration.

reviewed by Christoph

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12743 2fb0f335-1f38-0410-981e-8018bf24f1b0

Fixed the stokes2cni test-problem such that it works with molar and mass fractions. The results match with those from klaus (see reference file r10276). 

(reviewed by Katherina and Christoph)

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12698 2fb0f335-1f38-0410-981e-8018bf24f1b0

to. 

ALU has a different convergence behavior than UG, leading to different
timestep sizes. UG and ALU have the same (fuzzy) result if the timestep
is limited to one second. 

Therefore, an update of the reference solution, indirectly caused by the
change of grid managers, seems justified. 
Discussed with Bernd and Christoph


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12654 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by thomas)

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12647 2fb0f335-1f38-0410-981e-8018bf24f1b0

This reference solution should fit the conducted test. 
It was good, if all tests used the parameter from the input file. ...


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12592 2fb0f335-1f38-0410-981e-8018bf24f1b0

This shoudl revert the reference solution of the 3p model and update the
reference solution of the 3p3c model


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12589 2fb0f335-1f38-0410-981e-8018bf24f1b0

the reference solutions were not valid any more after commit 12215:
removal of incremental update of average molar mass ind fluidstate. 
It is unclear why this led to changing reference solutions, but no
substantial difference in results, also after longer simulation runs,
could be observed. 



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12584 2fb0f335-1f38-0410-981e-8018bf24f1b0

We agreed that the new consideration of partial pressures makes more
sense, therefore the reference is updated. 


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12583 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12558 2fb0f335-1f38-0410-981e-8018bf24f1b0

Update reference solutions to accomondate for the changes of the pressure increment for the fluid compressibility in commit r12400. Only minor differences in the solution.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12465 2fb0f335-1f38-0410-981e-8018bf24f1b0

Adapt the 2d-adaptive tests to r12460 to use new class names. Changed name of the test application, problem, reference file etc. to prepare for the upcoming 3d test.
Reviewd by GrüniBüni

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12464 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12415 2fb0f335-1f38-0410-981e-8018bf24f1b0

- longer simulation time: with coarser grid and forward instead of central
  differences 


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12228 2fb0f335-1f38-0410-981e-8018bf24f1b0

the new stokes2c problem now uses the stokesnc model since stokes2c is deprecated/obsolete. new reference test file was necessary due to more output data of stokesnc and small numerical differences in the order of 10^-8 for some entries.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12095 2fb0f335-1f38-0410-981e-8018bf24f1b0

Small changes in problem setup of the implicit 2p2c test: A gas phase with nitrogen and water vapor is injected (instead of solely the component nitrogen) which is composed according to the prevailing conditions in the aquifer. This is realized with the solution-dependent Neumann boundary condition. Exchanged reference solutions for cc and box, which showed tiny differences. Improved docu.

Discussed with Philipp and Bernd, reviewed by Markus

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11993 2fb0f335-1f38-0410-981e-8018bf24f1b0

Using a mutable permeability tensor in the spatial parameters resulted
in wrong averaged permeabilities. Store permeabilities in a vector
instead, just like in test_diffusion.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11784 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11558 2fb0f335-1f38-0410-981e-8018bf24f1b0

Updated references after implementation of the ability to use either mass or mole fractions and change of default settings.

reviewed by kathinka

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11556 2fb0f335-1f38-0410-981e-8018bf24f1b0

test_impeswithamg: run the parallel test a bit longer such that something happens on the second process. Adapt reference solution.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11532 2fb0f335-1f38-0410-981e-8018bf24f1b0

setting of the inflow velocities (and related pressure variations)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11497 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11488 2fb0f335-1f38-0410-981e-8018bf24f1b0