Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13286 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13285 2fb0f335-1f38-0410-981e-8018bf24f1b0

This merges the improvements to the AMG backend from the strip-pdelab
branch. Improvements are twofold:

1. The AMG backend does not require PDELab anymore. It is based directly
on dune-istl.

2. The convergence behavior is improved for parallel runs, at least for
the cases tested so far.

Thanks to Markus Blatt for the work.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13284 2fb0f335-1f38-0410-981e-8018bf24f1b0

This improves the behavior of GET_PARAM.

Thanks to Markus Blatt for the work.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13283 2fb0f335-1f38-0410-981e-8018bf24f1b0

correct use of wildcards, add ALUGrid flags to tests with AMG.

Merge revisions 12949, 13246 and 13248 from the strip-pdelab branch.
They all improve the buildsystem behavior.

Thanks to Markus Blatt for the work.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13282 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13281 2fb0f335-1f38-0410-981e-8018bf24f1b0

Note: It is not clear to me we use atOnceAccu and not
successiveAccu. Anyway as long as we use less than 100 processes
this should not bite us too much.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13269 2fb0f335-1f38-0410-981e-8018bf24f1b0

Previously this was done in every apply call. Unfortunately, the
initial condition for the algorithm was only satisfied in the first call.
This patch make sure that initGhostsAndOwners is only called during the
first apply method.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13266 2fb0f335-1f38-0410-981e-8018bf24f1b0

- The implicit 1p2c model is ready to use with the non-isothermal model
- Added 1p fluidmatrixinteractions to calculate effective thermal conductivity of fluid and solid
- Adjusted test/implicit/1p2c:
	- 1p2coutflowproblem.hh can be switched to nonisothermal
	- 1p2cconductionproblem.hh compares the model results to a simple analytical model
	- 1p2cconvectionproblem.hh compares the model results to another simple analytical model

Reviewed by Bernd

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13264 2fb0f335-1f38-0410-981e-8018bf24f1b0

The change to conservation of moles in the continuity balance brought
some non-fuzzy, but tolerable changes, to the Stokes2c(ni) tests.
Moreover, the stabilization parameter for the Stokes2c test has been
increased to dampen further the unphysical pressure oscillations.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13263 2fb0f335-1f38-0410-981e-8018bf24f1b0

Undefined values have been accessed in the StokesncniLocalResidual.

Reviewed by Thomas.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13261 2fb0f335-1f38-0410-981e-8018bf24f1b0

Stokes2c(ni) has been deprecated in 2.5. After some issues according to
FS#235 have been clarified, it can be removed.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13259 2fb0f335-1f38-0410-981e-8018bf24f1b0

For some situations, it appears to be useful to use the molar instead of
the mass density in the Stokes continuity equation. In order to enable
this behavior, the property UseMoles is used for Stokes and the
VolumeVariables are equipped with the required functionality.
Corresponding parts can be deleted from the derived Stokesnc model.

Modified from a patch provided by Vishal, thanks.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13258 2fb0f335-1f38-0410-981e-8018bf24f1b0

of FluidSystem

This is consistent with the standard local residuals. 

Patch provided by Vishal, thanks.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13257 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13253 2fb0f335-1f38-0410-981e-8018bf24f1b0

This patch fixes various bugs in the non-pdelab implementation:
1. The index sets are now correctly setup.
2. For the box model it is made sure that the right hand side is
consistent.

Now the test_box1pwithamg converges in the same number of steps of
the non-linear solve in parallel as in serial. (Not the case with
pdelab!)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13252 2fb0f335-1f38-0410-981e-8018bf24f1b0

Patch provided by Bernd Flemisch.

Implements the datahandles completely and correctly and adds
missing call to initGhostsAndOwners for the nonoverlapping case.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13251 2fb0f335-1f38-0410-981e-8018bf24f1b0

We use the normal initializers of the class constructor for this now.

NOTE: The member will be uninitialized if the default constructor is called!


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13250 2fb0f335-1f38-0410-981e-8018bf24f1b0

The compiler error was:
/home/mblatt/src/dune/release/dumux/dumux/decoupled/2p/diffusion/fvmpfa/lmethod/fvmpfal3dinteractionvolumecontaineradaptive.hh:96:5: error: a class-key must be used when declaring a friend
/home/mblatt/src/dune/release/dumux/dumux/decoupled/2p/diffusion/fvmpfa/lmethod/fvmpfal3dinteractionvolumecontaineradaptive.hh:96:5: error: friend declaration does not name a class or function
make[4]: *** [test_adaptive2p2c2d.o] Fehler 1

Seems like g++-4.6 is having problems with typedefs in a friend
declaration. We now us the original class type for this.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13249 2fb0f335-1f38-0410-981e-8018bf24f1b0

The correct usage of wildcards is "$(wildcard *.hh)".
With this patch we use these instead of "*.hh".

Quoting from https://www.gnu.org/software/make/manual/html_node/Wildcard-Examples.html#Wildcard-Examples

Wildcard expansion does not happen when you define a variable. Thus, if you write this:

     objects = *.o

then the value of the variable objects is the actual string ‘*.o’. However, if you use the value of objects in a target or prerequisite, wildcard expansion will take place there. If you use the value of objects in a recipe, the shell may perform wildcard expansion when the recipe runs. To set objects to the expansion, instead use:

     objects := $(wildcard *.o)



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13248 2fb0f335-1f38-0410-981e-8018bf24f1b0

We need to include $(top_srcdir) in AM_CPPFLAGS for this to work.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13246 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13242 2fb0f335-1f38-0410-981e-8018bf24f1b0

writer: call that function in order to write it to result file
reference: identical except one additional variable present


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13234 2fb0f335-1f38-0410-981e-8018bf24f1b0

in output


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13223 2fb0f335-1f38-0410-981e-8018bf24f1b0

void space. 

reviewed by Bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13220 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13204 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Bernd.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13199 2fb0f335-1f38-0410-981e-8018bf24f1b0

For the box porous media spatial parameters, we allow 
- both cell-wise and vertex-wise defined permeabilities,
- both scalar and tensorial permeabilities.

The reverted commits assumed vertex-wise scalar permeabilities 
and are not general enough. The currently correct way to give 
the permeabilities to the VTK output is to overwrite the method 
addOutputVtkFields in the problem at hand. There, it should be 
clear what type of permeabilities are used. See 
test/implicit/co2/heterogeneousproblem.hh
for details. Admittedly, this is not a very nice way, a better, but
general solution would be great.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13197 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13193 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13192 2fb0f335-1f38-0410-981e-8018bf24f1b0

included the energy fluxes transported by the diffusive component fluxes
times the enthalpy of the components
applies only for the free flow region

reviewed by Bernd and Vishal


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13165 2fb0f335-1f38-0410-981e-8018bf24f1b0

Added new property in basicproperties.hh called VTKMultiWriter, which can be used to change the type of output files either ascii (default) or appendedraw (binary format which saves space). For the implicit problems the VTKMultiWriter type is set in implicitproblem.hh by calling the property.
Reviewed by Bernd.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13109 2fb0f335-1f38-0410-981e-8018bf24f1b0

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Reviewed by Philipp.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13095 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Christoph.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13089 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Christoph.


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git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13070 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13069 2fb0f335-1f38-0410-981e-8018bf24f1b0