Manual cherry-pick of 8df16b03 and 5b7660af.

(cherry picked from commit f9cc226c)

Thomas Fetzer authored 7 years ago and Timo Koch committed 7 years ago

Fix deprecation of plot(), thanks Timo for the heads-up.

(cherry picked from commit 25fd3f26)

Fix deprecation of plot(), thanks Timo for the heads-up.

* Improve formating
* Move piece-of-cake to right section

* now: use initialPhasePresenceAtPos(globalPos)

Feature/pieceofcake

See merge request !354

Fix/restart and episodes

For me it would be more intuitive to first advance the time level and then do all the processing and file writing. However this is more complicated, therefore I shifted the restart stuff to the same level as the vtk output stuff.

See merge request !310

Now willBeFinished, timeStepIdx, ... is the same for shouldWriteOutput() and shouldWriteRestart()

Thomas Fetzer authored 8 years ago and Timo Koch committed 8 years ago

2p2c updated the reference solutions (changed phase presence indices)
2pnc changed: plSg --> pnsw; pgSl --> pwsn, removed plSg + pgSl from indices
2pncmin changed: plSg --> pnsw; pgSl --> pwsn as for 2pnc
2p2c, 2pnc: added the formulation changes to CHANGELOG.md

(cherry picked from commit b03738a2)

2p2c updated the reference solutions (changed phase presence indices)
2pnc changed: plSg --> pnsw; pgSl --> pwsn, removed plSg + pgSl from indices
2pncmin changed: plSg --> pnsw; pgSl --> pwsn as for 2pnc
2p2c, 2pnc: added the formulation changes to CHANGELOG.md

* functions bBoxMaxIsWall() and bBoxMaxIsWall() in the problem are now used instead of a property
* wall array is now a std::vector

* include section in changelog
* remove obsolete CTestConfig.cmake

Should even work when they stick to version 3.0, but
not vice versa.

Also update CHANGELOG with current deprecations.

* Reduce number of template arguments
* Rename property from tau to TauTortuosity

Kilian Weishaupt authored 8 years ago and Timo Koch committed 8 years ago

(cherry picked from commit b208b98f)

Kilian Weishaupt authored 8 years ago and Timo Koch committed 8 years ago

(cherry picked from commit 0c643665)

Replace the word "Decoupled" in TypeTags and classes by "Sequential",
according to FS#252.

For both the TypeTags and the Decoupled...Indices classes, the compilers
don't emit a deprecation warning. For the TypeTags, a run-time check is
performed at the end of the start() routine.