Adapt all Ctests to the new architecture of runtest

Reviewd by timok


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15131 2fb0f335-1f38-0410-981e-8018bf24f1b0

Adapt all Ctests to the new, architecture.

Reviewd by fetzer


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15129 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by timok)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15127 2fb0f335-1f38-0410-981e-8018bf24f1b0

The general setDirichlet function takes two parameters (pvIdx, eqIdx)
corresponding to the index of the primary variable and the index of the
balance equation. A convenience function that only takes one parameter
exists which calls the general version with two equal parameters. So
far, this one parameter has been documented as equation index. However,
it is better to refer to the parameter as a primary variable index.

This commit changes the parameter name and improves the documentation.
Furthermore, it replaces calls in the tests, whenever the general
version was called with two parameters of different name but equal value
or whenever the simplified version was called with an equation index
instead of a primary variable index.

See FS#270 for details.

Reviewed by Timo.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15115 2fb0f335-1f38-0410-981e-8018bf24f1b0

Deprecate unused function simulate from MultiDomainProblem.
(reviewed and tested by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15109 2fb0f335-1f38-0410-981e-8018bf24f1b0

- updated output
  - eddy coefficient are now printed to vtk
  - fluxVariables data is printed to csv file
- fixed small bug with the crossLength for Baldwin Lomax Model
- further removing of unused properties

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15103 2fb0f335-1f38-0410-981e-8018bf24f1b0

shortened setting of properties

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15094 2fb0f335-1f38-0410-981e-8018bf24f1b0

Changed linear solver for adaptive test problems. Previously SuperLU was used which is not included in the dune-istl module and therefore possibly not available on all machines. 

Reviewed by Timo

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15092 2fb0f335-1f38-0410-981e-8018bf24f1b0

which lead to a DUNE exception when compiling with O3 and march=native
on some machines

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15091 2fb0f335-1f38-0410-981e-8018bf24f1b0

The uploaded ones have been calculated using another grid manager than
the ones on the test system.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15089 2fb0f335-1f38-0410-981e-8018bf24f1b0

The fuzzycompare script seems to be not fuzzy enough. The differences
are due to the fact that the reference and the test solution have been /
are calculated on different systems. They are negligible.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15075 2fb0f335-1f38-0410-981e-8018bf24f1b0

The changes introduced in commit 14916 had no effect on the test
results. However, the reference solution was also updated. This restores
the old reference solution.

Discussed with fetzer.
 


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15074 2fb0f335-1f38-0410-981e-8018bf24f1b0

replaced SET_PROP by SET_INT_PROP, like it was proposed at a previous
dumux-day

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15070 2fb0f335-1f38-0410-981e-8018bf24f1b0

better handling of switching on/off of the gnuplot windows
deprecated use of the plottingwindownumber
unified output names

reviewed by bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15069 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15068 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15066 2fb0f335-1f38-0410-981e-8018bf24f1b0

* change in  richards output - pressure head output only if gravity is defined
* update of reference solutions of all richards tests - needed due to change in the output (pressure head, water content and source values)

discussed and reviewed by Bernd



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15062 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Nicolas

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15061 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15060 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed headercheck by forward declaration of properties and includes of
the correct headers

reviewed by martins and timok


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15059 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added asserts for the mass/mole formulations in the coupling
  conditions to ensure that the coupling conditions are applied
correctly
- skip test in case SuperLU or UMFPack are not available
- updated documention and use of properties

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15055 2fb0f335-1f38-0410-981e-8018bf24f1b0

- defaulted superlu and umfpack as linear solver
- added macros to skip test if the two above mentioned solvers are not
  installed
- removed duplicate property definition
- beautified comments

reviewed by gruenich and hommel


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15051 2fb0f335-1f38-0410-981e-8018bf24f1b0

Same for make_shared and some includes.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15050 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15047 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15044 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated vtk output:
1) same names as in pm
2) always give mole and mass frac in output

reviewed by nicolas


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15042 2fb0f335-1f38-0410-981e-8018bf24f1b0

reviewed by fetzer



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15039 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed warnings from doxygen

[plotthermalconductivitymodel]
deprecated the old class constructor call

reviewed by nicolas


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15029 2fb0f335-1f38-0410-981e-8018bf24f1b0

reviewed by gruenich
wq


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15027 2fb0f335-1f38-0410-981e-8018bf24f1b0

It prevented the automatically building of the executable.
(revelead and reviewed by nicolas)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15026 2fb0f335-1f38-0410-981e-8018bf24f1b0

added guardian macros for the case of missing multidomain


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15025 2fb0f335-1f38-0410-981e-8018bf24f1b0

doxygen
- added zeroeq and multidomain models
- add model and problem descriptions

handbook
- changes in the model description of models which do not use a free
  flow are just related to changes in doxygen
- added equation subsections for multidomain and zeroeq models

naming
- applied naming convention to stokes, zeroeq, and multidomain
  models/problems

reviewed by fetzer



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15023 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed bug in the calculation of the diffusion and conduction term in the
stokes equation
updated reference solutions and added new tests for diffusion and
conduction

reviewed by bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14997 2fb0f335-1f38-0410-981e-8018bf24f1b0

Remove deprecated, Autotools-based build system.
Use CMake-based one instead.
(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14939 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed bug when massUpwindWeight < 1 is used in stokes

reviewed by bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14916 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added test problems for coupling turbulent free flow using zero eq.
turbulence models with flow in porous media
- documentation will follow

[CHANGELOG]
updated changelog to latest commits

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14886 2fb0f335-1f38-0410-981e-8018bf24f1b0

added possibility to pass user-defined options (in gnuplot language),
datafile separator can now be chosen, and always a gnuplot script will be
produced

[plotoverline2d.hh]
added switch to rewrite instead of append to data file, removed
superfluous tabs

[evaporationatmosphereproblem.hh]
added example for use of gnuplotinterface and plotoverline2d

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14876 2fb0f335-1f38-0410-981e-8018bf24f1b0

added the zeroeq turbulence models from dumux-devel
added zeroeq test problems
to be done:
 - general docu and doxygen docu
 - model description for handbook
 - dune compatibilites 2.3 and >2.3

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14861 2fb0f335-1f38-0410-981e-8018bf24f1b0

added functionality to pass gnuplot options for each plot

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14851 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed call of thermalconductivity plot (initializing with pressure and
temperature) without deprecation

[material]
unified output for out-of-range messages in h2o component

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14831 2fb0f335-1f38-0410-981e-8018bf24f1b0