fixed headercheck by forward declaration of properties and includes of
the correct headers

reviewed by martins and timok


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15059 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added asserts for the mass/mole formulations in the coupling
  conditions to ensure that the coupling conditions are applied
correctly
- skip test in case SuperLU or UMFPack are not available
- updated documention and use of properties

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15055 2fb0f335-1f38-0410-981e-8018bf24f1b0

- defaulted superlu and umfpack as linear solver
- added macros to skip test if the two above mentioned solvers are not
  installed
- removed duplicate property definition
- beautified comments

reviewed by gruenich and hommel


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15051 2fb0f335-1f38-0410-981e-8018bf24f1b0

Same for make_shared and some includes.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15050 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15047 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15044 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated vtk output:
1) same names as in pm
2) always give mole and mass frac in output

reviewed by nicolas


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15042 2fb0f335-1f38-0410-981e-8018bf24f1b0

reviewed by fetzer



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15039 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed warnings from doxygen

[plotthermalconductivitymodel]
deprecated the old class constructor call

reviewed by nicolas


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15029 2fb0f335-1f38-0410-981e-8018bf24f1b0

reviewed by gruenich
wq


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15027 2fb0f335-1f38-0410-981e-8018bf24f1b0

It prevented the automatically building of the executable.
(revelead and reviewed by nicolas)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15026 2fb0f335-1f38-0410-981e-8018bf24f1b0

added guardian macros for the case of missing multidomain


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15025 2fb0f335-1f38-0410-981e-8018bf24f1b0

doxygen
- added zeroeq and multidomain models
- add model and problem descriptions

handbook
- changes in the model description of models which do not use a free
  flow are just related to changes in doxygen
- added equation subsections for multidomain and zeroeq models

naming
- applied naming convention to stokes, zeroeq, and multidomain
  models/problems

reviewed by fetzer



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15023 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed bug in the calculation of the diffusion and conduction term in the
stokes equation
updated reference solutions and added new tests for diffusion and
conduction

reviewed by bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14997 2fb0f335-1f38-0410-981e-8018bf24f1b0

Remove deprecated, Autotools-based build system.
Use CMake-based one instead.
(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14939 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed bug when massUpwindWeight < 1 is used in stokes

reviewed by bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14916 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added test problems for coupling turbulent free flow using zero eq.
turbulence models with flow in porous media
- documentation will follow

[CHANGELOG]
updated changelog to latest commits

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14886 2fb0f335-1f38-0410-981e-8018bf24f1b0

added possibility to pass user-defined options (in gnuplot language),
datafile separator can now be chosen, and always a gnuplot script will be
produced

[plotoverline2d.hh]
added switch to rewrite instead of append to data file, removed
superfluous tabs

[evaporationatmosphereproblem.hh]
added example for use of gnuplotinterface and plotoverline2d

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14876 2fb0f335-1f38-0410-981e-8018bf24f1b0

added the zeroeq turbulence models from dumux-devel
added zeroeq test problems
to be done:
 - general docu and doxygen docu
 - model description for handbook
 - dune compatibilites 2.3 and >2.3

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14861 2fb0f335-1f38-0410-981e-8018bf24f1b0

added functionality to pass gnuplot options for each plot

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14851 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed call of thermalconductivity plot (initializing with pressure and
temperature) without deprecation

[material]
unified output for out-of-range messages in h2o component

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14831 2fb0f335-1f38-0410-981e-8018bf24f1b0

The reference files are still wrong and need an update.
(reviewed by natalies)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14827 2fb0f335-1f38-0410-981e-8018bf24f1b0

evalPhaseStorageDerivative

See FS#261 for details
http://www.dumux.org/flyspray/index.php?do=details&task_id=261

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14799 2fb0f335-1f38-0410-981e-8018bf24f1b0

Test more decoupled 2p models in 3d.

Reviewed by Martin S.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14791 2fb0f335-1f38-0410-981e-8018bf24f1b0

This fixes FS#266.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14789 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated call of masstransfermodel class

[multidomain]
- if a boundarylayer model for mass transfer is used, now this also means a boundary layer
  model for energy transfer is used too (which is more consistent)
- added a test for the masstransfer and boundary layer models

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14757 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added individual headers for boundary layer and mass transfer models, which were implemented in the couplinglocaloperator

[multidomain]
- uses above mentioned new header and classes
- improved own start function, especially the usage function
- updated parts of the reference solutions, due to marginal deviations

[implicit]
- added convenience function for the viscosity in the 2p2c model 


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14743 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by martinb)

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14727 2fb0f335-1f38-0410-981e-8018bf24f1b0

The richards model has now an additional flag useHead, which can be used to switch between pressure-saturation definition and pressureHead-watercontent definition. The primary variables are either pressure in [Pa] or pressure head in [cm]. Default is useHead = false.

tested and reviewed by Bernd



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14716 2fb0f335-1f38-0410-981e-8018bf24f1b0

Tests are no longer build when running ctest / make test.
They have to be explicitly built within the test folder
using "make all".
This fixes FS#263.
(reviewed by timok)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14622 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Timo

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14620 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/gridadapt@14615 2fb0f335-1f38-0410-981e-8018bf24f1b0

test/material/fluidmatrixinteractions

Different tests have been writing output to the same file which can lead
to wrong (testing) results if the tests are executed in parallel.

Reviewed by Thomas.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14611 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Timo

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/gridadapt@14601 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/gridadapt@14584 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/gridadapt@14583 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Timo

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/gridadapt@14582 2fb0f335-1f38-0410-981e-8018bf24f1b0

added new tests for all diffusivity and thermalconductivity laws
use debug streams in gnuplotinterface

reviewed by martinb



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14549 2fb0f335-1f38-0410-981e-8018bf24f1b0

Dune 2.4 and Dune 2.3 differ in the number of time steps.
(reviewed by becker)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14533 2fb0f335-1f38-0410-981e-8018bf24f1b0

delete parameters from input-files that were set to the default value, update parameterlist, update list of copyright holders
reviewed by Johannes


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14518 2fb0f335-1f38-0410-981e-8018bf24f1b0