reviewed by timok

[2p] Fix non-adaptive code if ALUGrid is not present.

(reviewed by fetzer)

See merge request !3

(reviewed by fetzer)

updated gitignore file, because CMake is used now

Following Dune's naming convention.

fixes make headercheck for various files

reviewed by bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15542 2fb0f335-1f38-0410-981e-8018bf24f1b0

* fixed the kuevette test case, wrong grid was used
* small changes in the problem description for all 3p3c tests

reviewed by bernd



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15540 2fb0f335-1f38-0410-981e-8018bf24f1b0

The tests 2cstokes2p2c and 2cnistokes2p2cni failed due to differences in
the final solutions that were caused by different timesteps that were
caused by a small difference in the number of Newton iterations for one
time step. This patch restricts the maximum time step size from 360 to
240 seconds. By this, the tests succeed. However, this is only a
temporary fix and the basic issue should be investigated as part of our
testing research.

Discussed with fetzer.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15539 2fb0f335-1f38-0410-981e-8018bf24f1b0

removed wrong float comparison for int variable
added input file links

reviewed by timok



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15538 2fb0f335-1f38-0410-981e-8018bf24f1b0

is still a lot to do, cf. FS#241.

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15532 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15524 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15523 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15513 2fb0f335-1f38-0410-981e-8018bf24f1b0

description of variables


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15511 2fb0f335-1f38-0410-981e-8018bf24f1b0

description of variables


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15506 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated changelog
corrected "adaptation" in the docu

reviewed by nicolas



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15505 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated the parameterlist.txt
then renamed the gridadaptation for implicit to gridadaption, to be
consistent with the decoupled stuff and the docu.

reviewed by nicolas


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15504 2fb0f335-1f38-0410-981e-8018bf24f1b0

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git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15502 2fb0f335-1f38-0410-981e-8018bf24f1b0

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15494 2fb0f335-1f38-0410-981e-8018bf24f1b0

The box method is not yet mass conservative. Therefore, an error is thrown by calling grid adaptation for the box method. 


Reviewed by Bernd

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15489 2fb0f335-1f38-0410-981e-8018bf24f1b0

The resulting PDF doc is named 0_dumux-handbook.pdf. The new name
disturbed the install statement. Still we have to think about the file
name of the handbook.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15481 2fb0f335-1f38-0410-981e-8018bf24f1b0

mistakenly commented in commit r15453.  Reviewed by kissinger


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15465 2fb0f335-1f38-0410-981e-8018bf24f1b0

Change color of blocks in figure from black to blue.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15461 2fb0f335-1f38-0410-981e-8018bf24f1b0

Slightly improve first sentences in chapters.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15459 2fb0f335-1f38-0410-981e-8018bf24f1b0

ends


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15454 2fb0f335-1f38-0410-981e-8018bf24f1b0

The material folder is now complete: 
-All units have been "TeXed"  and added where missing
-All relevant function arguments are described in doxygen
-All doxygen warnings but one have been removed, also from the recently added fluidsystems

Work done by Simon, reviewed by Alex


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15453 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15445 2fb0f335-1f38-0410-981e-8018bf24f1b0

Fix CMakeLists.txt that caused on some systems to broken
make doc.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15444 2fb0f335-1f38-0410-981e-8018bf24f1b0

Remove breakurl which does not work together with pdfLaTeX.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15438 2fb0f335-1f38-0410-981e-8018bf24f1b0

added timeStepIndex to output in zeroeqmodels
updated documentation of boundarylayer model

reviewed by natalies



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15437 2fb0f335-1f38-0410-981e-8018bf24f1b0

- changed naming of mole fractions x^alpha_kappa to x^kappa_alpha
- added zeroThreshold for the kuevette problem, because the non-wetting
  phase already disappaered at the end of the simulation

reviewed by timok



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15436 2fb0f335-1f38-0410-981e-8018bf24f1b0

introduced setMassFraction() in the compositionalfluidstate.hh so that
in case of mass fraction formulation, they can be set directly, the
converting to mole fractions is now handled by the
compositionalfluidstate class

some test failed (kuevette with 5% difference), new references are
committed, however maybe some thresholds have to be adapted

reviewed by kissinger


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15433 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added FluidState group, which appears now on the module page
- fixed ingroups


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15432 2fb0f335-1f38-0410-981e-8018bf24f1b0

- outsourced furtherpractice subchapter
- updated steps of a dumux simulation
- removed todos



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15431 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added doxygen comments and cleanup of defaultcomponents.hh
- improved documentation of constant.hh

[test]
- added units in test_navierstokes.input

reviewed by natalies



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15420 2fb0f335-1f38-0410-981e-8018bf24f1b0

list



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15409 2fb0f335-1f38-0410-981e-8018bf24f1b0

should pass now.

Reviewed by Timo.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15405 2fb0f335-1f38-0410-981e-8018bf24f1b0

Add required properties and their defaults.
[fix] Parameter in the ni electrochemistry
[cleanup] Adjust class names to naming conventions

Reviewed by bernd



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15403 2fb0f335-1f38-0410-981e-8018bf24f1b0

added the kinematicEddyViscosity to the vtu output, for using it in the
transport models

reviewed by kilian


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15401 2fb0f335-1f38-0410-981e-8018bf24f1b0