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Feature/python scipts formatting linting

Timo Koch requested to merge feature/python-scipts-formatting-linting into master

Fixes #1050 (closed)

TODO

  • Make all the linters happy (pylint is the most difficult but has good suggestions)
  • Make sure the scripts are still working (some changes are at least somewhat non-trivial)
    • bin/testing (can be decently tested by running CI with some fake change)
    • bin/postprocessing -> manual testing (partially tested)
    • extract_module -> manual testing
    • create_docker -> manual testing (partially tested)
Edited by Timo Koch

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