Merge branch 'cleanup/resolve-deprecations-3.8' into 'master'

[cleanup][timeloop][test] Fix deprecation warnings from setCheckPoint

See merge request !3697

examples/biomineralization/doc/mainfile.md

@@ -200,7 +200,7 @@ Based on that, the checkpoints for the simulation are set.
 
         // We set the time loop with episodes of various lengths as specified in the injection file
         // set the episode ends /check points:
-        timeLoop->setCheckPoint(injectionCheckPoints);
+        timeLoop->setCheckPoint(injectionCheckPoints.begin(), injectionCheckPoints.end());
 
         // We also set the initial episodeIdx in the problem to zero, as in the problem the boundary conditions depend on the episode.
         problem->setEpisodeIdx(episodeIdx);

examples/biomineralization/main.cc

@@ -148,7 +148,7 @@ int main(int argc, char** argv) try
 
         // We set the time loop with episodes of various lengths as specified in the injection file
         // set the episode ends /check points:
-        timeLoop->setCheckPoint(injectionCheckPoints);
+        timeLoop->setCheckPoint(injectionCheckPoints.begin(), injectionCheckPoints.end());
 
         // We also set the initial episodeIdx in the problem to zero, as in the problem the boundary conditions depend on the episode.
         problem->setEpisodeIdx(episodeIdx);

test/freeflow/shallowwater/poiseuilleflow/main.cc

@@ -86,7 +86,7 @@ int main(int argc, char** argv)
     if (hasParam("TimeLoop.PrintoutTimes"))
     {
         const auto timeLoopPrintoutTimes = getParam<std::vector<double>>("TimeLoop.PrintoutTimes");
-        timeLoop->setCheckPoint(timeLoopPrintoutTimes);
+        timeLoop->setCheckPoint(timeLoopPrintoutTimes.begin(), timeLoopPrintoutTimes.end());
     }
 
     timeLoop->setCheckPoint(tEnd);

test/porousmediumflow/richards/benchmarks/main.cc

@@ -92,7 +92,7 @@ int main(int argc, char** argv)
     // instantiate time loop
     auto timeLoop = std::make_shared<CheckPointTimeLoop<double>>(0.0, dt, tEnd);
     timeLoop->setMaxTimeStepSize(getParam<double>("TimeLoop.MaxTimeStepSize"));
-    timeLoop->setCheckPoint(checkPoints);
+    timeLoop->setCheckPoint(checkPoints.begin(), checkPoints.end());
     int checkPointCounter = 0;
 
     using Assembler = FVAssembler<TypeTag, DiffMethod::analytic>;