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Commit d0bf852d authored by Johannes Hommel's avatar Johannes Hommel
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Release2.9 Handbook 

Updated the folder structure description and the installation instruction in the handbook.
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doc/handbook/2_detailedinstall.tex
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...@@ -78,7 +78,7 @@ The slightly old-fashionedly named tape-archive-file, shortly named tar file or ...@@ -78,7 +78,7 @@ The slightly old-fashionedly named tape-archive-file, shortly named tar file or
tarball, is a common file format for distributing collections of files contained tarball, is a common file format for distributing collections of files contained
within these archives. within these archives.
The extraction from the tar files is done as follows: The extraction from the tar files is done as follows:
Download the tarballs from the respective \Dune (version 2.3) and \Dumux websites Download the tarballs from the respective \Dune (version 2.4) and \Dumux websites
to a certain folder in your file system. to a certain folder in your file system.
Create the {\Dune} root directory, named \texttt{dune} in the example below. Create the {\Dune} root directory, named \texttt{dune} in the example below.
Then extract the content of the tar files, e.\,g. with the command-line program Then extract the content of the tar files, e.\,g. with the command-line program
...@@ -91,14 +91,14 @@ After extraction, the actual name of the \emph{dumux root directory} is \texttt{ ...@@ -91,14 +91,14 @@ After extraction, the actual name of the \emph{dumux root directory} is \texttt{
\begin{lstlisting}[style=Bash] \begin{lstlisting}[style=Bash]
$ mkdir dune $ mkdir dune
$ cd dune $ cd dune
$ tar xzvf path_to_tarball_of/dune-common-2.3.1.tar.gz $ tar xzvf path_to_tarball_of/dune-common-2.4.0.tar.gz
$ tar xzvf path_to_tarball_of/dune-geometry-2.3.1.tar.gz $ tar xzvf path_to_tarball_of/dune-geometry-2.4.0.tar.gz
$ tar xzvf path_to_tarball_of/dune-grid-2.3.1.tar.gz $ tar xzvf path_to_tarball_of/dune-grid-2.4.0.tar.gz
$ tar xzvf path_to_tarball_of/dune-istl-2.3.1.tar.gz $ tar xzvf path_to_tarball_of/dune-istl-2.4.0.tar.gz
$ tar xzvf path_to_tarball_of/dune-localfunctions-2.3.1.tar.gz $ tar xzvf path_to_tarball_of/dune-localfunctions-2.4.0.tar.gz
$ tar xzvf path_to_tarball_of/dune-pdelab-2.0.0.tar.gz $ tar xzvf path_to_tarball_of/dune-pdelab-2.0.0.tar.gz
$ tar xzvf path_to_tarball_of/dune-typetree-2.3.1.tar.gz $ tar xzvf path_to_tarball_of/dune-typetree-2.4.0.tar.gz
$ tar xzvf path_to_tarball_of/dumux-2.7.tar.gz $ tar xzvf path_to_tarball_of/dumux-2.9.tar.gz
\end{lstlisting} \end{lstlisting}
Furthermore, if you wish to install the optional \Dune Grid-Howto which provides a tutorial Furthermore, if you wish to install the optional \Dune Grid-Howto which provides a tutorial
......
doc/handbook/4_structure.tex
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...@@ -14,22 +14,18 @@ ...@@ -14,22 +14,18 @@
\item \texttt{common}: general methods shared by all models, \item \texttt{common}: general methods shared by all models,
like the \texttt{start.hh} or the time manager like the \texttt{start.hh} or the time manager
\item \texttt{decoupled}: contains sequential models (pressure equation as part of
the fractional flow formulation). The general decoupled formulation can be found in
the subdirectory \texttt{common}. In each model folder, there are subdirectories
for the implicit pressure equation sorted by the employed discretization method,
and for the explicit transport equation.
\item \texttt{freeflow}: single-phase free-flow models. All models are discretized \item \texttt{freeflow}: single-phase free-flow models. All models are discretized
fully implicitly using the box-method. fully implicitly using the box-method.
\item \texttt{geomechanics}: models for solving rock mechanics and flow. \item \texttt{geomechanics}: models for solving rock mechanics and flow.
\item \texttt{implicit}: contains all fully implicit models. General methods shared \item \texttt{implicit}: contains the general methods shared
by all models are contained in \texttt{common}, together with specilized methods by all implicit models, together with specilized methods
for the two discretization types \texttt{box} and \texttt{cellcentered}. The for the two discretization types \texttt{box} and \texttt{cellcentered}.
\texttt{adaptive} folder contains methods for grid adaption. Each of the other The \texttt{adaptive} folder contains methods for grid adaption.
subdirectories contain a derived specific numerical model. The specialized model files can be found
at \texttt{porousmediumflow/model of interest/implicit/},
\texttt{freeflow/model of interest/}, or \texttt{geomechanics/model of interest/}.
\item \texttt{io}: additional in-/output possibilities like restart files, \item \texttt{io}: additional in-/output possibilities like restart files,
gnuplot-interface and a VTKWriter. gnuplot-interface and a VTKWriter.
...@@ -43,14 +39,20 @@ ...@@ -43,14 +39,20 @@
(e.g. viscosity, density). (e.g. viscosity, density).
The folder \texttt{spatialparams} contains all spatially dependend variables, like permeability and porosity. The folder \texttt{spatialparams} contains all spatially dependend variables, like permeability and porosity.
The class in \texttt{implicitspatialparameters.hh} provides spatial averaging routines. The class in \texttt{implicitspatialparameters.hh} provides spatial averaging routines.
Constitutive relations are found in \texttt{fluidmatrixinteractions},. Constitutive relations are found in \texttt{fluidmatrixinteractions}.
\item \texttt{multidomain}: coupling handling and coupling conditions for connecting \item \texttt{multidomain}: coupling handling and coupling conditions for connecting
different model types in different subdomains. different model types in different subdomains.
\item \texttt{nonlinear}: Newton's method. \item \texttt{nonlinear}: Newton's method.
\item \texttt{parallel}: helper files for parallel simulations \item \texttt{parallel}: helper files for parallel simulations.
\item \texttt{porousmediumflow}: contains all models for porous media setups.
\item \texttt{sequential}: contains the general methods shared
by all sequential models. The specialized model files can be found
at \texttt{porousmediumflow/model of interest/sequential/}.
\end{itemize} \end{itemize}
\item \texttt{test}: tests for each numerical model and some functionality. \item \texttt{test}: tests for each numerical model and some functionality.
...@@ -101,18 +103,13 @@ ...@@ -101,18 +103,13 @@
[.\node[FirstLevel] {common}; [.\node[FirstLevel] {common};
\node[ThirdLevel] { \node[ThirdLevel] {
Common files of the implicit (box and cell centered) models and the Common files of the implicit (box and cell centered) models and the
decoupled models: time integration, start routine, the property sequential models: time integration, start routine, the property
system, ...}; system, ...};
] ]
[.\node[FirstLevel] {decoupled}; [.\node[FirstLevel] {freeflow};
[.\node[SecondLevel] {\emph{models}}; [.\node[SecondLevel] {\emph{models}};
\node[ThirdLevel] { \node[ThirdLevel] {Specific model definition for free flow problems using the (Navier-) Stokes
Specific model definition for the decoupled formulation. In each model and algebraic turbulence models.};
folder are subdirectories for the implicit pressure equation, sorted by
discretization method, and for the explicit transport.};
]
[.\node[SecondLevel] {common};
\node[ThirdLevel] {Base classes and general files for the decoupled formulation.};
] ]
] ]
[.\node[FirstLevel] {geomechanics}; [.\node[FirstLevel] {geomechanics};
...@@ -120,32 +117,22 @@ ...@@ -120,32 +117,22 @@
\node[ThirdLevel] {Specific model definition for coupled flow and geomechnics simulations.}; \node[ThirdLevel] {Specific model definition for coupled flow and geomechnics simulations.};
] ]
] ]
[.\node[FirstLevel] {freeflow};
[.\node[SecondLevel] {\emph{models}};
\node[ThirdLevel] {Specific model definition for free flow problems using the (Navier-) Stokes
and algebraic turbulence models.};
]
]
[.\node[FirstLevel] {implicit}; [.\node[FirstLevel] {implicit};
[.\node[SecondLevel] {\emph{models}}; % [.\node[SecondLevel] {\emph{models}};
\node[ThirdLevel] {Model and problem definition: implementation of equations, \node[ThirdLevel] {Common functionality of cell centered and box formulation:
model specific properties and indices.}; assembling in implicitlocaljacobian.hh, evaluation of partial derivative
] in implicitlocalresidual.hh, base classes for model and problem definition.};
% ]
[.\node[SecondLevel] {box}; [.\node[SecondLevel] {box};
\node[ThirdLevel] {Specific files for gerenal fully implicit boxmethod: \node[ThirdLevel] {Specific files for the gerenal fully implicit boxmethod:
boxassembler, dual mesh geometry in boxfvelementgeometry.hh, assembler, dual mesh geometry in fvelementgeometry.hh,
base classes for model and problem definition.}; base classes for model and problem definition.};
] ]
[.\node[SecondLevel] {cellcentered}; [.\node[SecondLevel] {cellcentered};
\node[ThirdLevel] {Specific files for fully implicit cell centered method: ccassembler, \node[ThirdLevel] {Specific files for fully implicit cell centered method: assembler,
mesh geometry in ccfvelementgeometry.hh, base classes for model and mesh geometry in fvelementgeometry.hh, base classes for model and
problem definition.}; problem definition.};
] ]
[.\node[SecondLevel] {common};
\node[ThirdLevel] {Common functionality of cell centered and box formulation:
assembling in implicitlocaljacobian.hh, evaluation of partial derivative
in implicitlocalresidual.hh, base classes for model and problem definition.};
]
] ]
[.\node[FirstLevel] {io}; [.\node[FirstLevel] {io};
\node[ThirdLevel] {Additional in-/output possibilities like restart files, gnuplot-interface \node[ThirdLevel] {Additional in-/output possibilities like restart files, gnuplot-interface
...@@ -206,6 +193,20 @@ ...@@ -206,6 +193,20 @@
] ]
[.\node[FirstLevel] {parallel}; [.\node[FirstLevel] {parallel};
\node[ThirdLevel] {Files for parallel programming.}; \node[ThirdLevel] {Files for parallel programming.};
]
[.\node[FirstLevel] {porousmediumflow};
[.\node[SecondLevel] {\emph{models}};
\node[ThirdLevel] {Specific model definition for porous medium flow simulations,
in both \emph{implicit} or \emph{sequential} formulation:
implementation of equations,
model specific properties and indices.};
]
]
[.\node[FirstLevel] {sequential};
% [.\node[SecondLevel] {\emph{models}};
\node[ThirdLevel] {
General model definitions for the sequential formulation.};
% ]
] ]
] ]
\end{tikzpicture} \end{tikzpicture}
......
doc/handbook/SVG/dumux_strucutre_flowchart_horizontal_explained.svg deleted 100644 → 0
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