(e.g., replaced mass with mole fractions)

Reviewed by Thomas


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15206 2fb0f335-1f38-0410-981e-8018bf24f1b0

- Units in the fluidsystem/brinevariablesalinity and components/nacl checked. Additional commented units removed.
- Commented cout statements removed from computefromfugacities2pncmin, computefromreferencephase2pnc and miscible2pnccomposition
- The ccommented out removed from problem file and input file corrected.
- The test case is checked for both debug and optim model with clang compiler.

   

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No visible differences to the solution before.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15201 2fb0f335-1f38-0410-981e-8018bf24f1b0

Replace

if (!useMoles)
  // mass stuff
else
  // mole stuff

by

if (useMoles)
  // mole stuff
else
  // mass stuff 

Reviewed by fetzer.



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To follow the naming concenvention "brine_varSalinity" is moved to "brineversalinity". Moreover, a missing binary coefficient file brine_air is added (Reviewed by Johannes).

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15197 2fb0f335-1f38-0410-981e-8018bf24f1b0

New test case for 2pncmin model added to dumux/test. For this following additional files are needed (Reviewde by Johannes)

- For variation of salinity in brine the needed constitutive relations are implemented in components brine_VerSalinity.hh and nacl.hh
- Additional constraint solvers (compositionfromfugacities2pncmin and computefromreferencephase2pncmin) are needed, specially for the case nPhaseOnly
- Additional constraint solvers (computefromreferencephase2pnc and miscible2pnccomposition) are needed for 2pnc cases in general.
- Fluidsystem brineairfluidsystem is updated
- Binerycoefficient file for brine_air case is included. 

- A test case for 2pncmin model is included for flusiong of precipitated salt in gas reserviors. The includes corresponding problem file, spatial parameters file, input file and *.cc file.
- For this the CMakeLists.txt is also updated.
- A reference solution 2pncmin test case "injectionbox2pncmin-reference" is included to test/references folder

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15196 2fb0f335-1f38-0410-981e-8018bf24f1b0

- Properties for models 2pnc and 2pncmin modified so that they can be used for both box and cc methods.
- The Chemistry property is removed from volume veriables so it has to be checked for reaction test cases first.
- The minimum prorsity after mineralization can be selected now from spatial parameters.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15195 2fb0f335-1f38-0410-981e-8018bf24f1b0

Several explicit loops over the coordinate index can be replaced by
using the corresponding FieldVector functionality.

This implements FS#271.

Reviewed by fetzer.


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updated todo list with changes from last meeting
improved the structure of the model section



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15190 2fb0f335-1f38-0410-981e-8018bf24f1b0

References have to be updated due to differences between test system and
the system of the reference solution creator. The differences are small,
but still too large for fuzzycompare. This is a known issue, see FS#281
for details.

The two ni-multidomain tests use the same names for the output. This
leads to conflicts when the tests are executed in parallel. The names of
one test are changed to fix this.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15189 2fb0f335-1f38-0410-981e-8018bf24f1b0

No major changes.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15188 2fb0f335-1f38-0410-981e-8018bf24f1b0

[mainpage.txt]: added links to Modules overview page and to
parameterlist.txt

Reviewed by Thomas


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conventions

Reviewed by gruenich.



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Introduce a grid creator that reads from a Petrel output / Eclipse input
file and generates a CpGrid that is offered by the OPM module
dune-cornerpoint. Enhance the fully-implicit cell-centered models to be
able to deal with cornerpoint grids, test the functionality. This patch
consists of several parts:

- patches/ and dune.module: the CMake buildsystems from Dune and OPM are
  not compatible. The patches change some CMake files in the required
  OPM modules opm-parser, opm-core and dune-cornerpoint in such a way
  that those modules can serve as a dependency for Dumux. In addition,
  some specific CMake options have to be passed to dunecontrol. See
  patches/README for details.

- dumux/io/: defines the CpGridCreator which behaves like any other grid
  creator that reads from a file. In addition, it offers the Eclipse
  input deck in form of a static function deck(). This deck can be used
  to extract further simulation parameters, most prominently porosity
  and permeability values.

- dumux/implicit/cornerpoint/: changes some of the cell-centered
  classes to be able to deal with a CpGrid. The changes in the
  ElementVolumeVariables and the FVElementGeometry are minor and
  required by the facts that a CpGrid doesn't offer codim-1/2 entities
  and that the geometries don't offer local-to-global mappings. The
  changes in the DarcyFluxVariables are made for enhancing the
  robustness of the two-point flux approximation by forcing the
  inter-element transmissibilities to be positive.

- test/implicit/2p: runs a fully-implicit two-phase immiscible model on
  a CpGrid. An element index with an injection rate can be given in the
  input file. The grid provided in grids/ consists of only four
  elements, but exhibits typical cornerpoint features like a
  nonconforming situation and general hexahedrons. A more realistic grid
  will be provided in dumux-lecture soon.

Reviewed by gruenich.



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Updated solution patch files.

reviewed by fetzer


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15177 2fb0f335-1f38-0410-981e-8018bf24f1b0

update of chapter 4+5
 - restructured and combined different sections
 - shortened text

done by gruenich and fetzer


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15168 2fb0f335-1f38-0410-981e-8018bf24f1b0

The new test employs the function
setDirichlet(pvIdx, eqIdx)
with pvIdx != eqIdx.

On the right boundary, a Dirichlet value for the nonwetting-phase
pressure should be set. At the same time, nonwetting phase should
be allowed to leave the domain by means of an outflow boundary
condition. In order to achieve this the general 'setDirichlet'
method is used in the function 'boundaryTypesAtPos' which allows
to set the value of a primary variable by replacing an arbitrary
balance equation. In this case, the index of the primary variable
is Indices::pnIdx, while the index of the replaced equation is
Indices::contiWEqIdx. This allows to set the outflow condition for
equation index Indices::contiNEqIdx.

This completes FS#270.

Reviewed by Timo.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15167 2fb0f335-1f38-0410-981e-8018bf24f1b0

test_boxmpnckinetic now uses the start.hh and the
interfacegridcreator.hh
updated parameters and removed tabs from input file

test still fails, but the results with/without these changes are
identical

reviewed by kilian


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15165 2fb0f335-1f38-0410-981e-8018bf24f1b0

adapted the interfacegridcreator to the common GridCreator type structure
and for the use in the common start.hh
deprecated the interfacemeshcreator.hh

[multidomain]
adapted multidomain to be used with the common start.hh
deprecated the old multidomainproblem constructor

thanks to and reviewed by bernd and gruenich



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tries to parse the first commandline argument as the input file, if it is no key

reviewed by natalies


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15158 2fb0f335-1f38-0410-981e-8018bf24f1b0

added cmake macro which, when called, links all input files of a folder

reviewed by martinb


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[handbook/grids] added a short description of ArtMesh and ICEM. Both has to be updated according to the required level of details


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New model 2pncmin moved from dumux-devel to dumux-stable. The changes are reviewed by J.Hommel. The model was directly or indirectly used in publications (Jambhekar et. al 2015 and Hommel. et.al 2015) 

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[fix] Remove unknown cmake macro. It is not needed here since the parameterfiles are given with the source path.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15133 2fb0f335-1f38-0410-981e-8018bf24f1b0

Adapt all Ctests to the new architecture of runtest

Reviewd by timok


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15131 2fb0f335-1f38-0410-981e-8018bf24f1b0

Adapt all Ctests to the new, architecture.

Reviewd by fetzer


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15129 2fb0f335-1f38-0410-981e-8018bf24f1b0

J.Hommel (Was used in publications: Jambhekar et.al, 2012, Hommel et.al
,2015) 


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