Resolve "[PNM][util] Check for versions of porespy and openpnm in python scripts + updating scripts to new versions"

Closes #1243

See merge request !3565

Merge branch 'feature/ff-pm-coupling-allow-different-discretizations-easy-to-read-commit-history' into 'master'

[ff-pm-coupling] allow different discretization schemes

See merge request !3620

[timeloop][fix] Fix timeloop when time is negative and/or endtime is zero

See merge request !3617

[fvproblem][internaldirichlet] fix docu

See merge request !3614

[test][timestepping] Cache residuals instead of variables

See merge request !3613

The equation is du/dt - exp(u) = 0 in residual form, so the sign is part of the equation.
The generic sum of the multistep scheme uses only addition.

[experimental] Add 3rd order DIRK time stepping scheme

See merge request !3612

Feature/expression parser

See merge request !3611

[fix] Temporarily disable multithreading (again) for freeflow coupling manager

See merge request !3609

this was disabled in the deprecated coupling managers for the pq1bubble and diamond schemes
but the diamond scheme and other cvfe schemes were forgotten when the cvfe coupling manager was unified.

[example][1d3d] Add advection term in formula

See merge request !3606

[handbook][cleanup] Remove rest of handbook

Closes #1238 and #991

See merge request !3581

The remaining sections are handled in the dumux course
and the examples.

[doc] Feature/doc dissolve handbook (partial)

See merge request !3580