- Moved all general descriptions to doxygen.
- General descriptions were included in modules.txt
- New groups had to be added in modules.txt:
	-ConstraintSolver
	-EOS
	-ParameterCache

The function definition requires brackets (). The function keyword
is unnecessary and results in less portable shell code, see:
http://unix.stackexchange.com/questions/73750/difference-between-function-foo-and-foo

Thomas Fetzer authored 9 years ago and Kilian Weishaupt committed 9 years ago

Add preprocessor deprecations to deprecation list in doxygen

The handbook bibliography is now also used
for citing references via doxygen.

updated the parameterlist.txt
then renamed the gridadaptation for implicit to gridadaption, to be
consistent with the decoupled stuff and the docu.

reviewed by nicolas


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15504 2fb0f335-1f38-0410-981e-8018bf24f1b0

- added FluidState group, which appears now on the module page
- fixed ingroups


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15432 2fb0f335-1f38-0410-981e-8018bf24f1b0

list



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15409 2fb0f335-1f38-0410-981e-8018bf24f1b0

Updated featurelist for all freeflow and multidomain tests and partially
for io and material.
As the parameterlist.txt, now also the featurelist.txt uses the doxygen
markdown for the tables.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15397 2fb0f335-1f38-0410-981e-8018bf24f1b0

The parameters are now listed using the mark down support of doxygen for
creating tables. The parameter spreadsheet and html are now superfluous.
The script for checking new/old parameters has been updated.

reviewed by bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15394 2fb0f335-1f38-0410-981e-8018bf24f1b0

are documented properly (see FS#220)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15337 2fb0f335-1f38-0410-981e-8018bf24f1b0

problems; The list contains currently  only features of the implicit
test problems. Everybody is welcome to contribute the completion of the list. 


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15302 2fb0f335-1f38-0410-981e-8018bf24f1b0

[mainpage.txt]: added links to Modules overview page and to
parameterlist.txt

Reviewed by Thomas


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15187 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15066 2fb0f335-1f38-0410-981e-8018bf24f1b0

cf. FS#273
(reviewed martinb)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15046 2fb0f335-1f38-0410-981e-8018bf24f1b0

doxygen
- added zeroeq and multidomain models
- add model and problem descriptions

handbook
- changes in the model description of models which do not use a free
  flow are just related to changes in doxygen
- added equation subsections for multidomain and zeroeq models

naming
- applied naming convention to stokes, zeroeq, and multidomain
  models/problems

reviewed by fetzer



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15023 2fb0f335-1f38-0410-981e-8018bf24f1b0

Remove deprecated, Autotools-based build system.
Use CMake-based one instead.
(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14939 2fb0f335-1f38-0410-981e-8018bf24f1b0

- Rename mainpage, modules and parameterlist to *.txt
  to work around new behavior in Doxygen 1.8.8 or newer.
- Fix missing closing brackets in brine_co2.hh.
- Add missing ! in plotoverline (by fetzer)
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14763 2fb0f335-1f38-0410-981e-8018bf24f1b0

The html apparently has been created with a different tool and was not
included properly by doxygen.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14617 2fb0f335-1f38-0410-981e-8018bf24f1b0

delete parameters from input-files that were set to the default value, update parameterlist, update list of copyright holders
reviewed by Johannes


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14518 2fb0f335-1f38-0410-981e-8018bf24f1b0

Approved by natalies.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13506 2fb0f335-1f38-0410-981e-8018bf24f1b0

approved by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13504 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated doxygen docu, there are still 7 warnings are produced


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13381 2fb0f335-1f38-0410-981e-8018bf24f1b0

correct use of wildcards, add ALUGrid flags to tests with AMG.

Merge revisions 12949, 13246 and 13248 from the strip-pdelab branch.
They all improve the buildsystem behavior.

Thanks to Markus Blatt for the work.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13282 2fb0f335-1f38-0410-981e-8018bf24f1b0

The correct usage of wildcards is "$(wildcard *.hh)".
With this patch we use these instead of "*.hh".

Quoting from https://www.gnu.org/software/make/manual/html_node/Wildcard-Examples.html#Wildcard-Examples

Wildcard expansion does not happen when you define a variable. Thus, if you write this:

     objects = *.o

then the value of the variable objects is the actual string ‘*.o’. However, if you use the value of objects in a target or prerequisite, wildcard expansion will take place there. If you use the value of objects in a recipe, the shell may perform wildcard expansion when the recipe runs. To set objects to the expansion, instead use:

     objects := $(wildcard *.o)



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/branches/strip-pdelab@13248 2fb0f335-1f38-0410-981e-8018bf24f1b0

Be aware that doxygen might timeout with older versions
of dune-common.
(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13066 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed Christoph and Alex)

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12710 2fb0f335-1f38-0410-981e-8018bf24f1b0

Add units to comments, fix doxygen groups.
(reviewed by martins)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12704 2fb0f335-1f38-0410-981e-8018bf24f1b0

Updated the doxygen documentation of the 2p,2pni, co2ni, 2p2cni models and the 2p and 2pni tests according to FS#209. Also adjusted the doxygen/modules file and replaced group TwoPBoxModel with TwoPModel.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12617 2fb0f335-1f38-0410-981e-8018bf24f1b0

Add new doxygen module for the MPFA backbone (data structure, transmissibility caluclation, properties) to improve overview given the multitude of files.

Add the indice saturationN (etc) as an alternative to the preposterous saturationNw (etc.)
reviewed by Thomas

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12458 2fb0f335-1f38-0410-981e-8018bf24f1b0

In r11948 I disabled the dot/GraphViz support because it
caused too big tarballs (>100 MiB).
The problem is now solved in dune-common …5598893bc702a
by setting INCLUDE_GRAPH to NO.
(reviewed by kissinger)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@12307 2fb0f335-1f38-0410-981e-8018bf24f1b0

This reduces the size of the generated documentation and thus the size
of the tarball.
(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11948 2fb0f335-1f38-0410-981e-8018bf24f1b0

included the docextra/parameterlist and docextra/parameters.html in Makefile.am in order to be able build doxygen with tarball 

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11674 2fb0f335-1f38-0410-981e-8018bf24f1b0

- ModelDescriptions: the model descriptions for co2 models, geomechanic
  models, 3p and 2pdfm have been added
- models.tex has been updated to include the models
- modules: geomechic module is added
Reviewed by Christoph


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11672 2fb0f335-1f38-0410-981e-8018bf24f1b0

modules file, removed some trailing whitespaces



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11659 2fb0f335-1f38-0410-981e-8018bf24f1b0

philtophoblaw.hh : updated documentation and added two example graphs in the documentation (pc_Sw_1 & pc_Sw_2). Also added the graphs (as *.png and *.svg) which are displaying the pc-Sw-relationship for the case in which water is the non-wetting phase.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@11249 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@10415 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@10284 2fb0f335-1f38-0410-981e-8018bf24f1b0

changed order in the modules.html pages
removed dumux/boxmodels/* from files.html (temporarily)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@10234 2fb0f335-1f38-0410-981e-8018bf24f1b0