*Fix errors
*Add .bib entry for citation

Reviewed by heck

Instead of calculating it in the local residual, the effective permeability
is now calculated within a new file permeabilityrutqvisttsang.hh in the
folder dumux/material/fluidmatrixinteractions.
This is just one possible effective permeability model. Several others can be
added and set via the property EffectivePermeabilityModel.

Up to now, the permeabilities were averaged twice, first by calculating
the mean of the mean of the intrinsic permeabilities in the flux variables
and later by averaging the effective permeabilities in the local residual.
This is redundant. Now, only the mean of the effective permeability is
calculated in the local residual.
This change required to change the reference files for the sequential and
the parallel test.

* in handbook and doxygen
* add hint in the opts file

Handbook:
- don't use deprecated Latex commands \it and \bf
- use the \Cplusplus macro consistently

Doxygen:
- put FluidStates group to the right hierarchy level
- improve wording

- Rename Fluid Framework to Material and Fluid Framework
- Removed content by reference to Doxygen documentation

changed the dune version to the most recent (2.4.1) in the detailed installation section.

updated the version to 2.9, edited the quick installation guide and adapted the path to the models in the model descriptions.

Remaining "decoupled"s in the handbook were replaced by "sequential"

Adapted the new tutorial filenames in CMakelists.txt in order to make "make 0_dumux_handbook_pdf" work as before.

Updated the sequential tutorial in the handbook.
Deleted the old solutions_(de)coupled folders. The previous commit added the new updated solutions.

Updated the tutorial and its description in the handbook to use implicit instead of coupled and sequential instead of decoupled.

Updated the folder structure description and the installation instruction in the handbook.

added the new minimum compiler and cmake requirements

In the section where the assembly of the linear system is explained,
the RHS of the linear system should be the residual r(u) and not the
primary variable u itself. It should read J(u)*x=r(u).

The handbook bibliography is now also used
for citing references via doxygen.

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15494 2fb0f335-1f38-0410-981e-8018bf24f1b0

The resulting PDF doc is named 0_dumux-handbook.pdf. The new name
disturbed the install statement. Still we have to think about the file
name of the handbook.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15481 2fb0f335-1f38-0410-981e-8018bf24f1b0

Change color of blocks in figure from black to blue.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15461 2fb0f335-1f38-0410-981e-8018bf24f1b0

Slightly improve first sentences in chapters.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15459 2fb0f335-1f38-0410-981e-8018bf24f1b0

ends


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@15454 2fb0f335-1f38-0410-981e-8018bf24f1b0