So far, the el2p model did not run in parallel, since our parallel
solvers assume a certain ordering of the degrees of freedom. This patch
mainly introduces an AMG backend that is tailored to the el2p model. It
simply reorders the linear system by copying from the original system,
passes the reordered system to the original AMG backend, and
reorders/copies the result back. This could be achieved more
efficiently and with less memory usage by already reordering the dofs
inside the el2p model or by adapting the AMG backend. Since the
performance impact appears to be minimal, we decided to keep the current
simple solution and try a better one once we need it.

Reviewed by Martin B.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14235 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14234 2fb0f335-1f38-0410-981e-8018bf24f1b0

Remove unused include and enums. Corrected enums to match cellcentered geometry.
The enums were still matched to the box method causing a memory overhead for the cellcentered.
Cellcentered methods should now need less allocated memory. Question remains if vector sizes 
in element geometry have to be variable (hanging nodes and low dimensional grids)

Reviewed by bernd
  


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14233 2fb0f335-1f38-0410-981e-8018bf24f1b0

property values

Several values steering the output as well as the Newton have been
handled inconsistently. While they have been obtained as run-time values
from the parameter tree in other models or parts of the mpnc model, the
compile-time property values have been taken at certain locations. Thus,
despite "advertised" as being run-time, it was not possible to actually
set them run-time. This was also due to the fact that those values have
been set as (private) enums. In order to reach consistency, these values
are member variables now and retrieved run-time.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14228 2fb0f335-1f38-0410-981e-8018bf24f1b0

The dumux.pc.in is generated when making a new dune module. It is used by CMake to build the pc file.
The old file still hard wired a dependency on dune-pdelab.
After this patch the pc files gets the required dependencies from the dependencies variable (compare other dune modules).
Furthermore libraries and includes are also derived.

Reviewed by grueninger  


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14221 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Dennis.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14205 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Dennis.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14203 2fb0f335-1f38-0410-981e-8018bf24f1b0

The routines for splitting and merging multidomain and subdomain
solution vectors have been hardcoded. Introducing a property enhances
the flexibility. For example, if one of the subdomain models is itself a
PDELab model, a different SplitAndMerge mechanism is required.

Reviewed by Dennis.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14201 2fb0f335-1f38-0410-981e-8018bf24f1b0

convergence writer

- The residual calculation for el2p was wrong, probably never used. It now
  forwards the call to the GridOperator functionality.

- The multidomain convergence writer assumed that sub-domain solution
  vectors can be default-contructed. This is not the case if a PDELab
  model is used for the subdomain.

Reviewed by Dennis.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14200 2fb0f335-1f38-0410-981e-8018bf24f1b0

Re-arrange weired if clauses.
Remove empty destructors.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14192 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14179 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14163 2fb0f335-1f38-0410-981e-8018bf24f1b0

- The properties "AMGPDELabBackend" and "AMGLocalFemMap" are unified to
  "AmgTraits". Since they appear to have been used only internally and
  deprecation is technically difficult, no deprecation is made.

- Remove setting of the property "SolutionVector", since it only resets
  the defaults.

- Deprecate the classes "SeqAMGBackend" and "ScaledSeqAMGBackend". The
  "AMGBackend" already distinguishes between serial and parallel
  settings. The scaling should be done for the residual already.

- Deprecate the class "P0LocalFiniteElementMap" which was only used for
  the PDELab-based backend.

- Remove occurrences of "PDELab" in the comments.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14162 2fb0f335-1f38-0410-981e-8018bf24f1b0

Remove empty constructors and destructors.
(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14161 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Bernd

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14160 2fb0f335-1f38-0410-981e-8018bf24f1b0

Fixed serializing and use of restart for the multidomain problems.
Restart of the problem can now be achieved by setting
TimeManager.Restart TIME.
However these changes also changed the reference solutions.

reviewed by Bernd


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14158 2fb0f335-1f38-0410-981e-8018bf24f1b0

Changed floating point comparisons. For comparisons with zero an absolute criteria is used, otherwise a relative one.

Reviewed by Timo 

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14145 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14143 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14142 2fb0f335-1f38-0410-981e-8018bf24f1b0

terminology

1. The deprecated protected member variables now are references to the
new variables. This ensures that the right value is considered even if
the old name is used.

2. In the constructor of the NewtonController, a check is performed if
a value for an old parameter name is set run-time. If yes, this value is
used correspondingly. A warning is still printed when the controller is
destructed.

This should ensure that the same results are produced even if the old
names are used.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14140 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14139 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14138 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by Bernd.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14136 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14135 2fb0f335-1f38-0410-981e-8018bf24f1b0

The terminology for the Newton method is improved according to FS#238.
In particular, what has been referred to as "relative error" is now
termed "maximum relative shift", while "absolute error" has been renamed
to "residual reduction". This is particularly important, if
corresponding parameters or properties are set. See the CHANGELOG for
details.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14132 2fb0f335-1f38-0410-981e-8018bf24f1b0

So far, it was not allowed 
- to have the same parameter name within more than one group,

- to deduct the same parameter name from more than one property.

I assume historical reasons for this. In the early years, there were no
groups at all and these measures should facilitate an easy migration
from without groups to groups. Since this migration has been done for
quite a while now, there are no reasons for keeping these restrictions.
Even more so, since they are rather contradictory to the group concept.
Moreover, assigning a parameter to the wrong group will result in being
listed as "unused parameter" at a very prominent position.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14131 2fb0f335-1f38-0410-981e-8018bf24f1b0

PROP_INFO_DEPRECATED_.

The macro SET_PROP_DEFAULT has been deprecated more than three years ago
and practically unused in stable and devel. The macro
PROP_INFO_DEPRECATED_ was a corresponding helper macro that is of no use
anymore.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14128 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14127 2fb0f335-1f38-0410-981e-8018bf24f1b0

parameter in the list created by compareparameters.sh.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14126 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14121 2fb0f335-1f38-0410-981e-8018bf24f1b0

- implement naming conventions
- add local reference variables to improve readability
- improve comments
- break long lines
- remove trailing whitespace

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14120 2fb0f335-1f38-0410-981e-8018bf24f1b0

ConstraintSolver or explicit calculation of secondary variables

For some problem settings, an explicit calculation of the secondary
variables proves to be more stable than using a ConstraintSolver. This
introduces the possiblity to choose between the two variants analogous
to 3p3c.

Reviewed by Bernd.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14119 2fb0f335-1f38-0410-981e-8018bf24f1b0

Similar for ElementLayout.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14111 2fb0f335-1f38-0410-981e-8018bf24f1b0

All implicit porous-media models except 2pdfm are now able to run on
grids with dim < dimWorld. This still required some replacements of dim
by dimWorld, for example, in the velocity output of all models. In
implicit/1p, four new tests are added that run the 1p test problem on
1d-2d and 1d-3d Alberta grids with box and cell-centered, respectively.
Compilation has been tested also for all other models, but no runtime
testing has been performed.

This completes FS#183. Based upon preliminary work and a patch by
Natalie, thank you.

Reviewed by Natalie.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14110 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14105 2fb0f335-1f38-0410-981e-8018bf24f1b0

and the forgotten update of the reference solutions



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14104 2fb0f335-1f38-0410-981e-8018bf24f1b0

- removed Beavers-Joseph dependency for the handling of the
couplingInflow and couplingOutflow boundaries
- removed todo and unused lines of code
- updated reference solutions for the multidomain problem (only small
deviations from reference)

reviewed by gruenich, bernd



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14102 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed issue, that the diffusive enthalpy fluxes have been treated
differently inside the stokes domain than at the coupling interface

reviewed by bernd



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14101 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed inconsistent use of the boundaryLayerOffset for the
boundary layer models

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14099 2fb0f335-1f38-0410-981e-8018bf24f1b0

replaced the boundary condition functions with the respective "atPos"
functions (Dumux day task)
introduced a "atPos" function for the Beavers-Jospeh Coefficient
applied naming convention to the bBox variables

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14096 2fb0f335-1f38-0410-981e-8018bf24f1b0