terminology

1. The deprecated protected member variables now are references to the
new variables. This ensures that the right value is considered even if
the old name is used.

2. In the constructor of the NewtonController, a check is performed if
a value for an old parameter name is set run-time. If yes, this value is
used correspondingly. A warning is still printed when the controller is
destructed.

This should ensure that the same results are produced even if the old
names are used.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14140 2fb0f335-1f38-0410-981e-8018bf24f1b0

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Reviewed by Bernd.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14136 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14135 2fb0f335-1f38-0410-981e-8018bf24f1b0

The terminology for the Newton method is improved according to FS#238.
In particular, what has been referred to as "relative error" is now
termed "maximum relative shift", while "absolute error" has been renamed
to "residual reduction". This is particularly important, if
corresponding parameters or properties are set. See the CHANGELOG for
details.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14132 2fb0f335-1f38-0410-981e-8018bf24f1b0

So far, it was not allowed 
- to have the same parameter name within more than one group,

- to deduct the same parameter name from more than one property.

I assume historical reasons for this. In the early years, there were no
groups at all and these measures should facilitate an easy migration
from without groups to groups. Since this migration has been done for
quite a while now, there are no reasons for keeping these restrictions.
Even more so, since they are rather contradictory to the group concept.
Moreover, assigning a parameter to the wrong group will result in being
listed as "unused parameter" at a very prominent position.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14131 2fb0f335-1f38-0410-981e-8018bf24f1b0

PROP_INFO_DEPRECATED_.

The macro SET_PROP_DEFAULT has been deprecated more than three years ago
and practically unused in stable and devel. The macro
PROP_INFO_DEPRECATED_ was a corresponding helper macro that is of no use
anymore.

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14128 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14127 2fb0f335-1f38-0410-981e-8018bf24f1b0

parameter in the list created by compareparameters.sh.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14126 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14121 2fb0f335-1f38-0410-981e-8018bf24f1b0

- implement naming conventions
- add local reference variables to improve readability
- improve comments
- break long lines
- remove trailing whitespace

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14120 2fb0f335-1f38-0410-981e-8018bf24f1b0

ConstraintSolver or explicit calculation of secondary variables

For some problem settings, an explicit calculation of the secondary
variables proves to be more stable than using a ConstraintSolver. This
introduces the possiblity to choose between the two variants analogous
to 3p3c.

Reviewed by Bernd.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14119 2fb0f335-1f38-0410-981e-8018bf24f1b0

Similar for ElementLayout.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14111 2fb0f335-1f38-0410-981e-8018bf24f1b0

All implicit porous-media models except 2pdfm are now able to run on
grids with dim < dimWorld. This still required some replacements of dim
by dimWorld, for example, in the velocity output of all models. In
implicit/1p, four new tests are added that run the 1p test problem on
1d-2d and 1d-3d Alberta grids with box and cell-centered, respectively.
Compilation has been tested also for all other models, but no runtime
testing has been performed.

This completes FS#183. Based upon preliminary work and a patch by
Natalie, thank you.

Reviewed by Natalie.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14110 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14105 2fb0f335-1f38-0410-981e-8018bf24f1b0

and the forgotten update of the reference solutions



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14104 2fb0f335-1f38-0410-981e-8018bf24f1b0

- removed Beavers-Joseph dependency for the handling of the
couplingInflow and couplingOutflow boundaries
- removed todo and unused lines of code
- updated reference solutions for the multidomain problem (only small
deviations from reference)

reviewed by gruenich, bernd



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14102 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed issue, that the diffusive enthalpy fluxes have been treated
differently inside the stokes domain than at the coupling interface

reviewed by bernd



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14101 2fb0f335-1f38-0410-981e-8018bf24f1b0

fixed inconsistent use of the boundaryLayerOffset for the
boundary layer models

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14099 2fb0f335-1f38-0410-981e-8018bf24f1b0

replaced the boundary condition functions with the respective "atPos"
functions (Dumux day task)
introduced a "atPos" function for the Beavers-Jospeh Coefficient
applied naming convention to the bBox variables

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14096 2fb0f335-1f38-0410-981e-8018bf24f1b0

cleaned up the stokes-darcy models:
  - SET_TYPE_PROP task from Dumux Day
  - cleaned up input
  - removed commented lines of code
  - removed try/catch blocks

updated the coupled-freeflow reference results which was broken in one
of the previous commits

reviewed by gruenich



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14094 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by fetzer and bernd,
thanks to pnuske for answering my question)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14088 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by natalies)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14086 2fb0f335-1f38-0410-981e-8018bf24f1b0

Before, velocity output only worked for cubes. This generalizes it to
simplices (box and cc) and prisms/pyramids (box only). Implements
FS#248.

Some reference solutions are adpated due to an improved boundary
condition handling for cell centered.

Reviewed by Alex.



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(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14080 2fb0f335-1f38-0410-981e-8018bf24f1b0

Relsize is not part of standard TeX live and causes errors.
Use the command suggested from the C++ FAQ.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14078 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by gruenich)


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This implements FS#216.

The "heatCapacity" function of the spatial parameters and the volume
variables for the implicit nonisothermal models was a misnomer, since it
returned an effective quantity, namely, 
heatCapacity*density*(1 - porosity) in [J/(K m^3)].
Except for mpnc, which resulted in an additional inconsistency.

Corresponding to the decision documented in FS#216, this patch renames
the function to "solidHeatCapacity" and returns always the "true"
(non-effective) heat capacity in [J/(kg K)]. This requires an additional
function "solidDensity" which returns the mass density of the porous
matrix. Moreover, the functions "thermalConductivitySolid/Fluid" are
renamed to "solid/fluidThermalConductivity". The decision to prepend
with "solid/fluid" rather than to append is motivated by consistency
with components and fluid systems, where "gas" and "liquid" are always
prepended to the corresponding function names.

_Beware_: this change breaks compatibility. You have to adapt your
spatial parameters such that they offer functions "solidHeatCapacity",
"solidDensity" and "solidThermalConductivity".

Reviewed by Alex.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14070 2fb0f335-1f38-0410-981e-8018bf24f1b0

changes in implicit velocity output: works now also with branched grids and withgrids where dim != dimworld

reviewed by Bernd



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14065 2fb0f335-1f38-0410-981e-8018bf24f1b0

deleted

The script should be run and acted upon before every release. This has
been added to the release manager's tasks.

Reviewed by Thomas.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14063 2fb0f335-1f38-0410-981e-8018bf24f1b0

Fix headercheck for this header.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14057 2fb0f335-1f38-0410-981e-8018bf24f1b0

- Forgot to mention: Reviewed by Thomas Fetzer



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14055 2fb0f335-1f38-0410-981e-8018bf24f1b0

- Included tests richardsniconduction and convection test for box and cc
- Fixed unit of thermalconductivitySolid() in all spatial parameters in the test folder from W/m^2 to W/(m K)

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14054 2fb0f335-1f38-0410-981e-8018bf24f1b0

- deleted all unnecessary comments
- deleted all ################-only lines


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14049 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by gruenich)

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14047 2fb0f335-1f38-0410-981e-8018bf24f1b0

This implements the task of the last dumux day for the implicit tests (common/decoupled/freeflow/geomechanics see earlier commit):
In test folder:
1. change SET_TYPE_PROP instead of SET_PROP where possible
2. Remove commented code where not needed
3. Remove unnecessary includes
4. Change the neumann/dirichlet,... functions to the corresponding atPos functions where globalPos is needed

The task for the multidomain folder will follow by thomas

Reviewed by bernd
 


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@14046 2fb0f335-1f38-0410-981e-8018bf24f1b0