Include new features, add links to models and test problems

Testing links for implicit models

*Was mistakenly interpreted as file name by doxygen

*Omitting this namespace leads to doxygen errors in fluidsystems and
 the non-equilibrium fluidstate

Fix/extrusionfactor for outflow

While included in the cc localresidual, the stokes and box localresidual did not account for the extrusion factor when dealing with outflow boundary conditions,
leading to weird results.

See merge request !191

[mpfal3d] Bugfix for interaction volume container

Fix of flyspray task FS#313

See merge request !193

[h2oair] Use sqrt instead of pow to speedup viscosity evaluation

test_stokes2c with refined grid speeds up by 2.7%.

See merge request !192

test_stokes2c with refined grid speeds up by 2.7%.

*Flux leaving the domain needs to be scaled be extrusion factor

*Flux leaving the domain needs to be scaled by extrusion factor

Feature/scotch matrix reordering

Reordering the matrix leads to improved sparsity pattern. This is especially important for growing network grids.

Reordering results using the ReorderingDofMapper implemented by this MR with a growing network grid.

* Original unsorted FoamGrid
![original](/uploads/4f29ec169127ea67dbe814f6ee9daab5/original.png)
* Reordered dof indices
![reordered](/uploads/e2ade49c081353981b00cdf8ce7b2c51/reordered.png)


See merge request !186

The mapper computes a permutation of the index set using the external PT-SCOTCH library.
This is a simple replacement for element mapper (cc) / vertex mapper (box). It requires to
store on int per dof for the mapping (fast direct vector access).
This makes the matrix bandwidth small and reduces the fillins during LU factorization.
So it helps especially for direct solvers or iterative solver preconditions by ILU.
The reordering is particularly helpful for network problems with foamgrid to optimize
the matrix sparsity pattern.

This enables the use of Dune's single codim single geometry mapper
that otherwise exists failing a static assert

[2p2c] Improve Millington&Quirk and constant tau

A quick test (Clang 3.8, one run, no error bar) of test_box2p2c with the optim.ops from dumux and a 100 times finer grid:  
Millington&Quirk: 99 s  
Constant Tau: 95 s  
That's about 5%. But more measurements are required and the differences in the solution must be checked.

This merge request does not address all changes proposed in the task [FS#321](http://www.dumux.org/flyspray/index.php?do=details&task_id=321)

See merge request !181

* Reduce number of template arguments
* Rename property from tau to TauTortuosity

Use multiplications and a cubic root instead
of std::pow
* Estimated 5% less time in 2p2c computation
* Roughly inbetween old code and constant tau

[fix][test] Fix the reference solution name for 2pbox fracture. We start counting from 0 now.



See merge request !190

[box/fvelementgeometry] Implement prism elements

* computeGeometries() worked for tetrahedrons and hexahedrons.

See FS#324

See merge request !161

Fix/fs309 uninitialised values

- [x] Move plotoverline2d.hh from dumux/io to test/porousmediaflow/mpnc/implicit


See merge request !176

[fracturebox2p] Add forgotten reference vtu file



See merge request !187

Feature/discrete fracture 2d3d test for box

Make box work for discrete fracture network grids 2d in 3d

*  [x] Fix scvf normal computation 2d in 3d
*  [ ] Fix boundary?

See merge request !172

Feature/new 3pwateroil



See merge request !179

Merge branch 'feature/new-3pwateroil' of https://git.iws.uni-stuttgart.de/dumux-repositories/dumux into feature/new-3pwateroil

Conflicts:
	test/porousmediumflow/3pwateroil/implicit/3pwateroilsagdproblem.hh

Holger Class authored 8 years ago and Bernd Flemisch committed 8 years ago

lecture. Unlike there, we use here a non-zero capillary pressure to use
rel-perms and capillary pressures from dumux stable

Holger Class authored 8 years ago and Bernd Flemisch committed 8 years ago

This was previously already available locally in dumux-lecture.

[gstat][doc] Add peer-reviewed paper as reference



See merge request !184

[cornerpoint] adapt to current Opm release 2016.04

With Opm release 2016.04, the module dune-cornerpoint has been
renamed to opm-grid. Interfaces changed without deprecation. There
doesn't seem to be a preprocessor macro to check for the employed
Opm version. Therefore, drop support for older versions and only
support 2016.04.

See merge request !182

[gridcreator] Fix gmsh grids for parallel alugrid runs

Dune-alugrid needs the gmsh reader to only fill the grid factory on rank 0.
See mergerequest !14 https://gitlab.dune-project.org/core/dune-grid/merge_requests/14.
This is different e.g. for UG that needs the grid on all processes.

See merge request !183