Freeflow/kepsilon wallfunction rebased

See merge request !1040

[test][tutorial] Make executables compile again

See merge request !1041

reference result change, but fine solution is still good

Then a lower y^+-value can be chosen

Feature/remove grid singleton

Closes #431

See merge request !1037

Implement a grid manager class that creates grids and a grid data object. The new class
is no longer a singleton. It is instantiated by the user. It is possible to get a
shared_ptr to the grid data to pass it on to e.g. problem / spatial parameter classes.

* No longer sets the overlap automatically (overlap to be checked by the grid geometry)
* Does not depend on discretization method or TypeTag anymore

Joint work with Kilian Weishaupt <kilian.weishaupt@iws.uni-stuttgart.de>

Improve harmonic mean to have less divisions

See merge request !1038

Melanie Lipp authored 6 years ago and Melanie Lipp committed 6 years ago

Change harmonic mean to a formulation which is more consistent with the old one (without weighting factors). One advantage of this formulation is that there are less divisions necessary.

[liquidphase2c] fluid system is not miscible

See merge request !1035

Fix/gridcreator gmsh parameters

See merge request !185

Bernd Flemisch authored 6 years ago and Timo Koch committed 6 years ago

The distribution of a grid over several cores can be system-dependent,
rendering the direct comparison of resulting parallel vtk files
impossible. To enable a comparison, convert the parallel files into
sequential ones in the fuzzycompare Python script. With this approach,
it is possible to compare the parallel output against the sequential
one. Adapt the gridcreator tests correspondingly.

Concerning the converted vtk files, a few difficulties had to be
handled:
* The files usually have duplicated vertices at the process borders.
  Eliminate the duplicated entries.

* The files can have an empty `PointData` section yielding to problems
  since the number of children differs. Eliminate the empty section
  from the files.

* The attributes may be different for each node: the
  `NumberOfComponents` isn't stated explicity if it is equal to `1`.
  On the other hand, the minimum and maximum values are provided
  which is not the case for the original vtk output. Eliminate the
  check of the attributes if a conversion from pvd has happened.

Enhance the gridcreator tests using boundary markers with an
additional synchronization step for those markers in the parallel
regime.

Bernd Flemisch authored 6 years ago and Timo Koch committed 6 years ago

Make the tests more flexible by passing a bool to refine or not.
Don't refine in the case of the ALUGrid 3d test, since apparently
the boundary parametrization isn't handled correctly during
refinement. Adapt the reference solutions.

Bernd Flemisch authored 6 years ago and Timo Koch committed 6 years ago

Only one marker per entity is communicated.