Adapted all implicit models and the geomechanics model such that the addOutputVtkFields() function only considers interior nodes. This is relevant for parallelisation. See flyspray task 221 for details.
Reviewed by Bernd.

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13429 2fb0f335-1f38-0410-981e-8018bf24f1b0

- Deprecated the 3p3cni model
- Added effective thermal conductivity calculation in fluidmatrixinteractions for 3p
- Added thermal conductivity functions to the 3p fluidsystem h2oairmesitylen.hh and h2oairxylene.hh
- Upddated the 3p3cni test for the generic non-isothermal model
- Changed the reference vtus for the two tests, since results are slightly different due to different thermal conductivities


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13427 2fb0f335-1f38-0410-981e-8018bf24f1b0

This is needed for dune-alugrid, cf. FS#237.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13414 2fb0f335-1f38-0410-981e-8018bf24f1b0

resolving make headercheck errors

reviewed by C.Grueninger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13412 2fb0f335-1f38-0410-981e-8018bf24f1b0

Once more, the complete path must be part of the wildcard.
(reviewed by natalies, like last commit)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13410 2fb0f335-1f38-0410-981e-8018bf24f1b0

The complete path must be part of the wildcard.
Additionally removed a file from cmake/module/CMakeLists.txt.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13408 2fb0f335-1f38-0410-981e-8018bf24f1b0

implemented use of input files by CMakeLists.txt

reviewed by natalies



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13406 2fb0f335-1f38-0410-981e-8018bf24f1b0

fix bug in 3p3cnifluxvaribles.hh (missing definition of dimworld)

reviewed by C.Grueninger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13405 2fb0f335-1f38-0410-981e-8018bf24f1b0

abs() is for integers. C offers fabs(), C++ std::abs.
(reviewed by natalies)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13404 2fb0f335-1f38-0410-981e-8018bf24f1b0

missing GlobalPosition 



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13395 2fb0f335-1f38-0410-981e-8018bf24f1b0

changing dim-matrices to dimWorld-matrices, needed for dim!=dimWorld grids (dispersive fluxes)

reviewed by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13393 2fb0f335-1f38-0410-981e-8018bf24f1b0

changing dim-matrices to dimWorld-matrices, needed for dim!=dimWorld grids

reviewed by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13392 2fb0f335-1f38-0410-981e-8018bf24f1b0

for all diffusive and dispersive fluxes, changing dim-vectors to dimWorld-vectors, needed for dim!=dimWorld grids

reviewed by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13390 2fb0f335-1f38-0410-981e-8018bf24f1b0

include #include<dune/pdelab/common/geometrywrapper.hh>

reviewed by M.Beck



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13386 2fb0f335-1f38-0410-981e-8018bf24f1b0

removed file which was deprecated a year ago

reviewed by martinb


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13382 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated doxygen docu, there are still 7 warnings are produced


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13381 2fb0f335-1f38-0410-981e-8018bf24f1b0

changing dim-vectors to dimWorld-vectors, needed for dim!=dimWorld grids

reviewed by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13376 2fb0f335-1f38-0410-981e-8018bf24f1b0

changing dim-vectors to dimWorld-vectors, needed for dim!=dimWorld grids

reviewed by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13375 2fb0f335-1f38-0410-981e-8018bf24f1b0

added cmake and ctest compatibility for multidomain problems

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13371 2fb0f335-1f38-0410-981e-8018bf24f1b0

added new start messages and unified output

reviewed by gruenich and martinb


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13370 2fb0f335-1f38-0410-981e-8018bf24f1b0

They should be inside the *.input files.
Most parameters were redunant anyway.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13360 2fb0f335-1f38-0410-981e-8018bf24f1b0

for the energy balance the diffusive enthalpy flux for the "phase
compenent" is now calculated based on the assumption that the sum of all
molar diffusive fluxes is zero


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13358 2fb0f335-1f38-0410-981e-8018bf24f1b0

Keep compatible to current master modules (PDELab, multidomain)
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13356 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13355 2fb0f335-1f38-0410-981e-8018bf24f1b0

model

Discussed with Thomas.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13354 2fb0f335-1f38-0410-981e-8018bf24f1b0

CMake defines HAVE_DUNE_ALUGRID and sets it to 0 or 1. Therefore, #ifdef
does not work here.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13353 2fb0f335-1f38-0410-981e-8018bf24f1b0

Since the molar density is not associated with a component, it was wrong
to set it always to zero. 


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13351 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated doxgen docu, 3 warnings left


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13350 2fb0f335-1f38-0410-981e-8018bf24f1b0

One more occurance that was not included in the previous commits.
(reviewed by natalies)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13346 2fb0f335-1f38-0410-981e-8018bf24f1b0

The adaptivity is borken, see FS#237.
(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13344 2fb0f335-1f38-0410-981e-8018bf24f1b0

Make complained about an empty variable. Probably it did
not like the :=+, thus it was replaced by " \" and
everything is added in one line.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13341 2fb0f335-1f38-0410-981e-8018bf24f1b0

Some more places are affected that where not included in last commit.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13339 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by natalies)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13328 2fb0f335-1f38-0410-981e-8018bf24f1b0

It was never officially part of the interface and was
removed after Dune 2.3.
Replaced by global.
(reviewed by martinb)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13323 2fb0f335-1f38-0410-981e-8018bf24f1b0

Use Entitiy.level() which is in most cases simply
EntityPointer->level().
(review by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13322 2fb0f335-1f38-0410-981e-8018bf24f1b0

I don't know why it is needed now and was not yet needed.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13320 2fb0f335-1f38-0410-981e-8018bf24f1b0

Thanks to Georg Futter for reporting this.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13313 2fb0f335-1f38-0410-981e-8018bf24f1b0

The two-phase geomechanics model is based on PDELab 2.0 now. In order to
avoid patching, the ElTwoPModel is based on the new ElTwoPBaseModel
instead of the ImplicitModel. The ElTwoPBaseModel is almost a copy of
ImplicitModel and only differs in the way that the SolutionVectors are
handled. There's definitely room for improvement here. 



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13296 2fb0f335-1f38-0410-981e-8018bf24f1b0

Since everything has been moved to PDELab 2.0, the checks for a patched
PDELab are no longer needed. 



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13295 2fb0f335-1f38-0410-981e-8018bf24f1b0

If the CO2NI model is used, the the properties IsothermalModel and
IsothermalVolumeVariables have to be set in the corresponding problem
file.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13294 2fb0f335-1f38-0410-981e-8018bf24f1b0