changing dim-matrices to dimWorld-matrices, needed for dim!=dimWorld grids (dispersive fluxes)

reviewed by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13393 2fb0f335-1f38-0410-981e-8018bf24f1b0

changing dim-matrices to dimWorld-matrices, needed for dim!=dimWorld grids

reviewed by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13392 2fb0f335-1f38-0410-981e-8018bf24f1b0

for all diffusive and dispersive fluxes, changing dim-vectors to dimWorld-vectors, needed for dim!=dimWorld grids

reviewed by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13390 2fb0f335-1f38-0410-981e-8018bf24f1b0

include #include<dune/pdelab/common/geometrywrapper.hh>

reviewed by M.Beck



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13386 2fb0f335-1f38-0410-981e-8018bf24f1b0

removed file which was deprecated a year ago

reviewed by martinb


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13382 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated doxygen docu, there are still 7 warnings are produced


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13381 2fb0f335-1f38-0410-981e-8018bf24f1b0

changing dim-vectors to dimWorld-vectors, needed for dim!=dimWorld grids

reviewed by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13376 2fb0f335-1f38-0410-981e-8018bf24f1b0

changing dim-vectors to dimWorld-vectors, needed for dim!=dimWorld grids

reviewed by A.Kissinger



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13375 2fb0f335-1f38-0410-981e-8018bf24f1b0

added cmake and ctest compatibility for multidomain problems

reviewed by gruenich


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13371 2fb0f335-1f38-0410-981e-8018bf24f1b0

added new start messages and unified output

reviewed by gruenich and martinb


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13370 2fb0f335-1f38-0410-981e-8018bf24f1b0

They should be inside the *.input files.
Most parameters were redunant anyway.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13360 2fb0f335-1f38-0410-981e-8018bf24f1b0

for the energy balance the diffusive enthalpy flux for the "phase
compenent" is now calculated based on the assumption that the sum of all
molar diffusive fluxes is zero


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13358 2fb0f335-1f38-0410-981e-8018bf24f1b0

Keep compatible to current master modules (PDELab, multidomain)
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13356 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13355 2fb0f335-1f38-0410-981e-8018bf24f1b0

model

Discussed with Thomas.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13354 2fb0f335-1f38-0410-981e-8018bf24f1b0

CMake defines HAVE_DUNE_ALUGRID and sets it to 0 or 1. Therefore, #ifdef
does not work here.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13353 2fb0f335-1f38-0410-981e-8018bf24f1b0

Since the molar density is not associated with a component, it was wrong
to set it always to zero. 


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13351 2fb0f335-1f38-0410-981e-8018bf24f1b0

updated doxgen docu, 3 warnings left


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13350 2fb0f335-1f38-0410-981e-8018bf24f1b0

One more occurance that was not included in the previous commits.
(reviewed by natalies)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13346 2fb0f335-1f38-0410-981e-8018bf24f1b0

The adaptivity is borken, see FS#237.
(reviewed by bernd)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13344 2fb0f335-1f38-0410-981e-8018bf24f1b0

Make complained about an empty variable. Probably it did
not like the :=+, thus it was replaced by " \" and
everything is added in one line.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13341 2fb0f335-1f38-0410-981e-8018bf24f1b0

Some more places are affected that where not included in last commit.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13339 2fb0f335-1f38-0410-981e-8018bf24f1b0

(reviewed by natalies)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13328 2fb0f335-1f38-0410-981e-8018bf24f1b0

It was never officially part of the interface and was
removed after Dune 2.3.
Replaced by global.
(reviewed by martinb)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13323 2fb0f335-1f38-0410-981e-8018bf24f1b0

Use Entitiy.level() which is in most cases simply
EntityPointer->level().
(review by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13322 2fb0f335-1f38-0410-981e-8018bf24f1b0

I don't know why it is needed now and was not yet needed.
(reviewed by fetzer)


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13320 2fb0f335-1f38-0410-981e-8018bf24f1b0

Thanks to Georg Futter for reporting this.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13313 2fb0f335-1f38-0410-981e-8018bf24f1b0

The two-phase geomechanics model is based on PDELab 2.0 now. In order to
avoid patching, the ElTwoPModel is based on the new ElTwoPBaseModel
instead of the ImplicitModel. The ElTwoPBaseModel is almost a copy of
ImplicitModel and only differs in the way that the SolutionVectors are
handled. There's definitely room for improvement here. 



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13296 2fb0f335-1f38-0410-981e-8018bf24f1b0

Since everything has been moved to PDELab 2.0, the checks for a patched
PDELab are no longer needed. 



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13295 2fb0f335-1f38-0410-981e-8018bf24f1b0

If the CO2NI model is used, the the properties IsothermalModel and
IsothermalVolumeVariables have to be set in the corresponding problem
file.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13294 2fb0f335-1f38-0410-981e-8018bf24f1b0

There appears to be an incompatibility between clang and gcc <= 4.6
regarding friend declaration combined with typedef. This should be a
temporary workaround until a proper test is written (or found in Dune).



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13293 2fb0f335-1f38-0410-981e-8018bf24f1b0

git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13292 2fb0f335-1f38-0410-981e-8018bf24f1b0

models to the generic setting

In order to use a new nonisothermal model, only the includes in
the corresponding application files have to be changed from
including the dedicated non-isothermal model such as
#include <dumux/implicit/2p2cni/2p2cnimodel.hh>
to the corresponding isothermal one such as
#include <dumux/implicit/2p2c/2p2cmodel.hh>
This has been done for the tests in test/implicit/2pni, ...2p2cni and
...co2ni.

For enabling the isothermal models to get the new non-isothermal
functionality, it was sufficient to modify the files ...properties.hh
and ...propertydefaults.hh:

- In ...properties.hh, a non-isothermal type tag such as "TwoPTwoCNI" is
  introduced that inhereits from the corresponding isothermal one AND
  the type tag "NonIsothermal". In order to not mix it up with the old
  non-isothermal models, corresponding safety guards were added.

- In ...propertydefaults.hh, the properties introduced in
  niproperties.hh of the isothermal model have to be set.

The old non-isothermal models have been deprecated by emitting a warning
if the corresponding ...properties.hh file is included. To ensure that
they still work, the ...properties.hh file is included on top of every
file that corresponds to the old model. Together with the safety guard
mentioned above, this guarantees that in fact the old model is chosen if
desired.

Reviewed by Alex K.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13290 2fb0f335-1f38-0410-981e-8018bf24f1b0

conductivities, correct comments and spacing.

The additional properties required by the generic non-isothermal model
can be centralized in a file niproperties.hh. 

The signature of the effectiveThermalConductivity functions is unified.
They get the volume variables, spatial parameters and the arguments that
will be required for calling the spatial parameters. When attempting to
use the nonisothermal model for 3p3c, it will be seen whether this
signature is genral enough.

Reviewed by Alex K.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13289 2fb0f335-1f38-0410-981e-8018bf24f1b0

files and installation script



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13288 2fb0f335-1f38-0410-981e-8018bf24f1b0

Allows to use an unpatched (!) PDELab 2.0 for the multidomain
applications. Users have to upgrade to PDELab 2.0 and the 2.0 release
branch of dune-multidomain. 

- Subdomain GridFunctionSpaces are expected to use
  Dune::PDELab::NoConstraints instead of
  ...NonoverlappingConformingDirichletConstraints. Users have to remove
  the corresponding property settings in the subproblem files.

- Subdomain GridOperators are no longer needed. The property name has
  been removed from subdomainproperties.hh. Users have to remove
  the corresponding property settings in the subproblem files.

- Use OrderingTags instead of Mappers.

- The storage of residual, current and old solution in the
  assembler/model uses shared_ptr now. 

- The components of the multidomain vector containers are accessed via
  the base() method. Everything in splitandmerge.hh still relies on
  EntityBlockwiseOrdering. 

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13287 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13286 2fb0f335-1f38-0410-981e-8018bf24f1b0

Reviewed by gruenich.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13285 2fb0f335-1f38-0410-981e-8018bf24f1b0

This merges the improvements to the AMG backend from the strip-pdelab
branch. Improvements are twofold:

1. The AMG backend does not require PDELab anymore. It is based directly
on dune-istl.

2. The convergence behavior is improved for parallel runs, at least for
the cases tested so far.

Thanks to Markus Blatt for the work.



git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13284 2fb0f335-1f38-0410-981e-8018bf24f1b0

This improves the behavior of GET_PARAM.

Thanks to Markus Blatt for the work.


git-svn-id: svn://svn.iws.uni-stuttgart.de/DUMUX/dumux/trunk@13283 2fb0f335-1f38-0410-981e-8018bf24f1b0