[bin][install] Capture output in log file, print on terminal, print error message in case of failure

Although `extractmodulepart.sh` generates a `README.md`, no
Markdown is used so far in this file. Use Markdown to define
headings, lists and a table.

* Download the required cmake.opts file (requires wget)
* Make for loop work on macOS bash
* Check if folders are already created and skip if so
* Make paraview command optional (might be installed as a separate programme package and is not strcitly needed for this installation)
* Make mkdir work if DUMUX already exists

Ned Coltman authored 4 years ago and Timo Koch committed 4 years ago

* adapt script
* adapt handbook to include more options

Ned Coltman authored 4 years ago and Timo Koch committed 4 years ago

* modify install guidance
* re-add the test_dumux.sh

Subfolder names in CMake's `add_subdirectory` are and should not be
quoted anymore.

Bernd Flemisch authored 6 years ago and Timo Koch committed 6 years ago

The distribution of a grid over several cores can be system-dependent,
rendering the direct comparison of resulting parallel vtk files
impossible. To enable a comparison, convert the parallel files into
sequential ones in the fuzzycompare Python script. With this approach,
it is possible to compare the parallel output against the sequential
one. Adapt the gridcreator tests correspondingly.

Concerning the converted vtk files, a few difficulties had to be
handled:
* The files usually have duplicated vertices at the process borders.
  Eliminate the duplicated entries.

* The files can have an empty `PointData` section yielding to problems
  since the number of children differs. Eliminate the empty section
  from the files.

* The attributes may be different for each node: the
  `NumberOfComponents` isn't stated explicity if it is equal to `1`.
  On the other hand, the minimum and maximum values are provided
  which is not the case for the original vtk output. Eliminate the
  check of the attributes if a conversion from pvd has happened.

Enhance the gridcreator tests using boundary markers with an
additional synchronization step for those markers in the parallel
regime.

`opm-material` is not needed anymore. Since Dumux checks itself for
`opm-common` in its `CMakeLists.txt`, changes to `opm-grid`'s
buildsystem giles aren't necessary anymore.

now defaults to the dumux folder if no other folder is specified as command line argument.

Bernd Flemisch authored 6 years ago and Timo Koch committed 6 years ago

Add a corresponding python script `bin/util/create_cmakelists.py`.
Move the folder `bin/moduleutil` to `bin/util`.
Run the script.